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External_ITKv5.cmake
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External_ITKv5.cmake
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# Make sure this file is included only once by creating globally unique varibles
# based on the name of this included file.
get_filename_component(CMAKE_CURRENT_LIST_FILENAME ${CMAKE_CURRENT_LIST_FILE} NAME_WE)
if(${CMAKE_CURRENT_LIST_FILENAME}_FILE_INCLUDED)
return()
endif()
set(${CMAKE_CURRENT_LIST_FILENAME}_FILE_INCLUDED 1)
## External_${extProjName}.cmake files can be recurisvely included,
## and cmake variables are global, so when including sub projects it
## is important make the extProjName and proj variables
## appear to stay constant in one of these files.
## Store global variables before overwriting (then restore at end of this file.)
ProjectDependancyPush(CACHED_extProjName ${extProjName})
ProjectDependancyPush(CACHED_proj ${proj})
# Make sure that the ExtProjName/IntProjName variables are unique globally
# even if other External_${ExtProjName}.cmake files are sourced by
# SlicerMacroCheckExternalProjectDependency
set(extProjName ITK) #The find_package known name
set(proj ITKv5) #This local name
set(${extProjName}_REQUIRED_VERSION ${${extProjName}_VERSION_MAJOR}) #If a required version is necessary, then set this, else leave blank
#if(${USE_SYSTEM_${extProjName}})
# unset(${extProjName}_DIR CACHE)
#endif()
# Sanity checks
if(DEFINED ${extProjName}_DIR AND NOT EXISTS ${${extProjName}_DIR})
message(FATAL_ERROR "${extProjName}_DIR variable is defined but corresponds to non-existing directory (${${extProjName}_DIR})")
endif()
# Set dependency list
set(${proj}_DEPENDENCIES "")
if(${PROJECT_NAME}_BUILD_DICOM_SUPPORT)
list(APPEND ${proj}_DEPENDENCIES DCMTK JPEG TIFF)
endif()
# Include dependent projects if any
SlicerMacroCheckExternalProjectDependency(${proj})
if(NOT DEFINED ${extProjName}_DIR AND NOT ${USE_SYSTEM_${extProjName}})
#message(STATUS "${__indent}Adding project ${proj}")
# Set CMake OSX variable to pass down the external project
set(CMAKE_OSX_EXTERNAL_PROJECT_ARGS)
if(APPLE)
list(APPEND CMAKE_OSX_EXTERNAL_PROJECT_ARGS
-DCMAKE_OSX_ARCHITECTURES=${CMAKE_OSX_ARCHITECTURES}
-DCMAKE_OSX_SYSROOT=${CMAKE_OSX_SYSROOT}
-DCMAKE_OSX_DEPLOYMENT_TARGET=${CMAKE_OSX_DEPLOYMENT_TARGET})
endif()
### --- Project specific additions here
set(${proj}_DCMTK_ARGS)
if(${PROJECT_NAME}_BUILD_DICOM_SUPPORT)
set(${proj}_DCMTK_ARGS
-DITK_USE_SYSTEM_DCMTK:BOOL=ON
-DDCMTK_DIR:PATH=${DCMTK_DIR}
-DModule_ITKDCMTK:BOOL=ON
-DModule_ITKIODCMTK:BOOL=ON
)
endif()
if(${PROJECT_NAME}_BUILD_FFTWF_SUPPORT)
set(${proj}_FFTWF_ARGS
-DITK_USE_FFTWF:BOOL=ON
)
endif()
if(${PROJECT_NAME}_BUILD_FFTWD_SUPPORT)
set(${proj}_FFTWD_ARGS
-DITK_USE_FFTWD:BOOL=ON
)
endif()
if(${extProjName}_BUILD_MINC_SUPPORT)
set(${proj}_MINC_ARGS
-DModule_ITKIOMINC:BOOL=ON
-DModule_ITKIOTransformMINC:BOOL=ON
-DModule_ITKMINC:BOOL=ON
)
endif()
set(${proj}_WRAP_ARGS)
#if(foo)
#set(${proj}_WRAP_ARGS
# -DINSTALL_WRAP_ITK_COMPATIBILITY:BOOL=OFF
# -DWRAP_float:BOOL=ON
# -DWRAP_unsigned_char:BOOL=ON
# -DWRAP_signed_short:BOOL=ON
# -DWRAP_unsigned_short:BOOL=ON
# -DWRAP_complex_float:BOOL=ON
# -DWRAP_vector_float:BOOL=ON
# -DWRAP_covariant_vector_float:BOOL=ON
# -DWRAP_rgb_signed_short:BOOL=ON
# -DWRAP_rgb_unsigned_char:BOOL=ON
# -DWRAP_rgb_unsigned_short:BOOL=ON
# -DWRAP_ITK_TCL:BOOL=OFF
# -DWRAP_ITK_JAVA:BOOL=OFF
# -DWRAP_ITK_PYTHON:BOOL=ON
# -DPYTHON_EXECUTABLE:PATH=${${CMAKE_PROJECT_NAME}_PYTHON_EXECUTABLE}
# -DPYTHON_INCLUDE_DIR:PATH=${${CMAKE_PROJECT_NAME}_PYTHON_INCLUDE}
# -DPYTHON_LIBRARY:FILEPATH=${${CMAKE_PROJECT_NAME}_PYTHON_LIBRARY}
# )
#endif()
# HACK This code fixes a loony problem with HDF5 -- it doesn't
# link properly if -fopenmp is used.
string(REPLACE "-fopenmp" "" ITK_CMAKE_C_FLAGS "${CMAKE_C_FLAGS}")
string(REPLACE "-fopenmp" "" ITK_CMAKE_CXX_FLAGS "${CMAKE_CX_FLAGS}")
find_package(ZLIB REQUIRED)
set(${proj}_CMAKE_OPTIONS
-DBUILD_TESTING:BOOL=OFF
-DBUILD_EXAMPLES:BOOL=OFF
-DCMAKE_INSTALL_PREFIX:PATH=${CMAKE_BINARY_DIR}/staging
-DITK_LEGACY_REMOVE:BOOL=OFF # <--- NEEDED TEMPORARILY until fixes for enum-class and ITK 5.1 release are required
-DITK_FUTURE_LEGACY_REMOVE:BOOL=ON
-DITKV3_COMPATIBILITY:BOOL=OFF
-DITK_BUILD_DEFAULT_MODULES:BOOL=ON
# -DITK_MODULE_Core:BOOL=ON
# -DITK_MODULE_IO:BOOL=ON
# -DITK_MODULE_Filtering:BOOL=ON
# -DITK_MODULE_Registration:BOOL=ON
#-DITK_INSTALL_NO_DEVELOPMENT:BOOL=ON
-DKWSYS_USE_MD5:BOOL=ON # Required by SlicerExecutionModel
-DITK_WRAPPING:BOOL=OFF #${BUILD_SHARED_LIBS} ## HACK: QUICK CHANGE
-DModule_MGHIO:BOOL=ON
-DModule_ITKReview:BOOL=ON
-DModule_GenericLabelInterpolator:BOOL=ON
-DModule_AdaptiveDenoising:BOOL=ON
${${proj}_DCMTK_ARGS}
${${proj}_WRAP_ARGS}
${${proj}_FFTWF_ARGS}
${${proj}_FFTWD_ARGS}
${${proj}_MINC_ARGS}
)
if( USE_VTK STREQUAL "ON" )
list(APPEND ${proj}_CMAKE_OPTIONS -DModule_ITKVtkGlue:BOOL=ON)
if( USE_SYSTEM_VTK STREQUAL "OFF" )
list(INSERT CMAKE_PREFIX_PATH 0 ${CMAKE_BINARY_DIR}/staging)
list(APPEND ${proj}_CMAKE_OPTIONS -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH})
endif()
list(APPEND ${proj}_DEPENDENCIES VTK)
else()
list(APPEND ${proj}_CMAKE_OPTIONS -DModule_ITKVtkGlue:BOOL=OFF)
endif()
### --- End Project specific additions
set(${proj}_REPOSITORY ${git_protocol}://github.com/InsightSoftwareConsortium/ITK.git)
# set(${proj}_REPOSITORY ${git_protocol}://github.com/stnava/ITK.git)
set(${proj}_GIT_TAG e21a56d1227c5433066237060368cb4532b8a9d2) # Adaptive denoising module 10/2/2020
set(ITK_VERSION_ID ITK-5.2) ### NOTE: When updating GIT_TAG, also update ITK_VERSION_ID
ExternalProject_Add(${proj}
GIT_REPOSITORY ${${proj}_REPOSITORY}
GIT_TAG ${${proj}_GIT_TAG}
SOURCE_DIR ${proj}
BINARY_DIR ${proj}-build
LOG_CONFIGURE 0 # Wrap configure in script to ignore log output from dashboards
LOG_BUILD 0 # Wrap build in script to to ignore log output from dashboards
LOG_TEST 0 # Wrap test in script to to ignore log output from dashboards
LOG_INSTALL 0 # Wrap install in script to to ignore log output from dashboards
${cmakeversion_external_update} "${cmakeversion_external_update_value}"
CMAKE_GENERATOR ${gen}
CMAKE_ARGS
-Wno-dev
--no-warn-unused-cli
${CMAKE_OSX_EXTERNAL_PROJECT_ARGS}
${COMMON_EXTERNAL_PROJECT_ARGS}
${${proj}_CMAKE_OPTIONS}
-DCMAKE_GENERATOR_PLATFORM:STRING=${CMAKE_GENERATOR_PLATFORM}
## We really do want to install in order to limit # of include paths INSTALL_COMMAND ""
DEPENDS
${${proj}_DEPENDENCIES}
)
set(${extProjName}_DIR ${CMAKE_BINARY_DIR}/staging/lib/cmake/${ITK_VERSION_ID})
else()
if(${USE_SYSTEM_${extProjName}})
find_package(${extProjName} ${ITK_VERSION_MAJOR} REQUIRED)
if(NOT ${extProjName}_DIR)
message(FATAL_ERROR "To use the system ${extProjName}, set ${extProjName}_DIR")
endif()
message("USING the system ${extProjName}, set ${extProjName}_DIR=${${extProjName}_DIR}")
endif()
# The project is provided using ${extProjName}_DIR, nevertheless since other
# project may depend on ${extProjName}, let's add an 'empty' one
SlicerMacroEmptyExternalProject(${proj} "${${proj}_DEPENDENCIES}")
endif()
list(APPEND ${CMAKE_PROJECT_NAME}_SUPERBUILD_EP_VARS ${extProjName}_DIR:PATH)
ProjectDependancyPop(CACHED_extProjName extProjName)
ProjectDependancyPop(CACHED_proj proj)