From 84123f13c33f6792ebccd4e9c79027b0b78514b0 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 24 Oct 2021 12:50:58 -0400 Subject: [PATCH 1/7] Updated all templates and add readme Updated formatting in all templates Revised issue template tags, and titles Added readme for organization --- .github/ISSUE_TEMPLATE/README.md | 58 +++++++++++++++++++ .github/ISSUE_TEMPLATE/add-synonym.md | 24 ++++---- .github/ISSUE_TEMPLATE/add-term.md | 28 +++++---- .github/ISSUE_TEMPLATE/custom.md | 5 +- .github/ISSUE_TEMPLATE/fix-xref.md | 21 +++---- .github/ISSUE_TEMPLATE/mergeTerm.md | 19 +++--- .github/ISSUE_TEMPLATE/obsolete-a-term.md | 18 +++--- .github/ISSUE_TEMPLATE/qc.md | 2 +- .github/ISSUE_TEMPLATE/relabel-term.md | 23 ++++---- .../revise-logical-definition.md | 21 +++---- .../revise-subclass-relationship.md | 19 +++--- .../revise-textual-definition.md | 18 +++--- .github/ISSUE_TEMPLATE/split-term.md | 20 +++---- .github/ISSUE_TEMPLATE/typos-bugs-errors.md | 10 ++-- 14 files changed, 157 insertions(+), 129 deletions(-) create mode 100644 .github/ISSUE_TEMPLATE/README.md diff --git a/.github/ISSUE_TEMPLATE/README.md b/.github/ISSUE_TEMPLATE/README.md new file mode 100644 index 0000000..2448535 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/README.md @@ -0,0 +1,58 @@ +# Issues Templates + +## About + +In defining the potential templates for incoming issues, it must be accepted that the issuer is the target for these templates. This is to comply with the perspective approach to this repo, and allow individuals from non-technical experts (I) to [Ontology Developers](https://oboacademy.github.io/obook/getting_started/#ontology-engineerdeveloper-you-are) (IV) to create new issues with ease, as they are the roles dealing directly with terms and their contexts. + +--- + +## Practice + +The perspective, in this repo, relies on each template's 'name' and 'about' content, while the possible 'title', 'tag', and 'assignees' are catered to the Ontology Curator's benefit. + +--- + +## Topics + +The issues generally found are: + +Terms-oriented: + +- [Add-term](./add-term.md) +- [Merge-term](./mergeTerm.md) +- [Obsolete-Term](./obsolete-a-term.md) +- [Split-term](./split-term.md) +- [Add-synonym](./add-synonym.md) +- [Fix-xref](./fix-xref.md) +- [Relabel-term](./relabel-term.md) +- [Revise-textual-definition](./revise-textual-definition.md) +- [Typos-bugs-errors](./typos-bugs-errors.md) + +Semantics-oriented: + +- [Revise-logical-definition](./revise-logical-definition.md) + - Duplicate term in multiple ontologies + - Overclassified/Overgeneralized subdomain terms +- [Revise-subclass-relationship](./revise-subclass-relationship.md) + +Others: + +- [Custom](./custom.md) + - IRI ID_range modifications + - Pattern-based subclasses workflow (dosdp/ROBOT) +- [QC](./qc.md) + - Automated reports-based issues + +--- + +## Fields +**AgrO term**: +> ID and Label (ie. `[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)`) + +**Suggested new label:**: + +**_Optional_**: +> Any additional information (like supporting evidence, PubMed ID, etc.) + +**Your nano-attribution (ORCID)**: +> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) \ No newline at end of file diff --git a/.github/ISSUE_TEMPLATE/add-synonym.md b/.github/ISSUE_TEMPLATE/add-synonym.md index 7ebd46c..22dae9e 100644 --- a/.github/ISSUE_TEMPLATE/add-synonym.md +++ b/.github/ISSUE_TEMPLATE/add-synonym.md @@ -1,24 +1,22 @@ --- name: Add synonym about: New synonym suggestion for an existing AgrO term. -title: '' -labels: synonym +title: '[Synonym] ' +labels: term-annot assignees: KrishnaTO # Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) ---- - -**AgrO term (ID and Label)** - -**Synonym to be added** - - -**Synonym subtype: ie, broad/exact/narrow/related** +--- +**AgrO term (ID and Label)**: -**Database cross reference for the synonym** Such as PURL, source (website) or a cross-reference to another ontology, like ENVO or PATO. +**Synonym to be added**: +**Synonym subtype**: +> ie, broad/exact/narrow/related -**Your nano-attribution (ORCID)** -If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) +**Database cross reference for the synonym**: +> Such as PURL, source (website) or a cross-reference to another ontology, like ENVO or PATO. +**Your nano-attribution (ORCID)**: +> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/add-term.md b/.github/ISSUE_TEMPLATE/add-term.md index 23da7e9..677bdc6 100644 --- a/.github/ISSUE_TEMPLATE/add-term.md +++ b/.github/ISSUE_TEMPLATE/add-term.md @@ -1,27 +1,25 @@ --- -name: Add term +name: Add new term about: New term suggestion for AgrO -title: "[NTR]" -labels: New term request +title: "[NTR] " +labels: term-add assignees: KrishnaTO # Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) --- -**Preferred term label:** +**Preferred term label**: +**Synonyms**: -**Synonyms** +**Definition**: +> please give PubMed ID, if applicable [PMID:#######] +**Parent term**: +> use [OLS](https://www.ebi.ac.uk/ols/ontologies/AgrO), or your favorite ontology browser -**Definition (free text, please give PubMed ID, if applicable, in format PMID:#######)** +**Children terms (if applicable)**: +> Should any existing terms that should be moved underneath this new proposed term? - -**Parent term (use [OLS](https://www.ebi.ac.uk/ols/ontologies/AgrO), or your favorite ontology browser)** - - -**Children terms (if applicable)** Should any existing terms that should be moved underneath this new proposed term? - - -**Your nano-attribution (ORCID)** -If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) +**Your nano-attribution (ORCID)**: +> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/custom.md b/.github/ISSUE_TEMPLATE/custom.md index 9b590a9..4fa6ca8 100644 --- a/.github/ISSUE_TEMPLATE/custom.md +++ b/.github/ISSUE_TEMPLATE/custom.md @@ -1,10 +1,11 @@ --- name: Custom issue template -about: Describe this issue template's purpose here. +about: When the issue isn't defined by other templates. Please provide as many references to resources mentioned as timely available. title: '' labels: '' -assignees: '' +assignees: krishnaTO # Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) + --- diff --git a/.github/ISSUE_TEMPLATE/fix-xref.md b/.github/ISSUE_TEMPLATE/fix-xref.md index 1d6871c..14fb28e 100644 --- a/.github/ISSUE_TEMPLATE/fix-xref.md +++ b/.github/ISSUE_TEMPLATE/fix-xref.md @@ -1,21 +1,18 @@ --- -name: fix xref -about: Report issue about incorrect xref on term. -title: '' -labels: xref +name: Fix/Add xref (source link, ex. for definitions) +about: Report issue about incorrect xref source on term. +title: '[xRef] ' +labels: term-annot assignees: KrishnaTO # Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) --- -**AgrO term (ID and Label):** +**AgrO term (ID and Label)**: +**Xref that should be fixed (ID and label)**: -**Xref that should be fixed (ID and label):** +**Other comments**: - -**Your nano-attribution (ORCID)** -If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) - - -**Other comments:** +**Your nano-attribution (ORCID)**: +> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/mergeTerm.md b/.github/ISSUE_TEMPLATE/mergeTerm.md index 9b41412..08166d6 100644 --- a/.github/ISSUE_TEMPLATE/mergeTerm.md +++ b/.github/ISSUE_TEMPLATE/mergeTerm.md @@ -1,21 +1,18 @@ --- name: Merge two terms -about: Obsolete or deprecate an existing AgrO term and merge with another Mondo term -title: "[Merge]" -labels: merge +about: Merge with another AgrO term and obsolete/deprecate an existing AgrO term +title: "[Merge] " +labels: term-mod assignees: KrishnaTO # Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) --- -**AgrO term (ID and Label)** +**AgrO term (ID and Label)**: +**Reason for deprecation**: -**Reason for deprecation** +**Term to be merged with**: - -**Term to be merged with** - - -**Your nano-attribution (ORCID)** -If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) +**Your nano-attribution (ORCID)**: +> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/obsolete-a-term.md b/.github/ISSUE_TEMPLATE/obsolete-a-term.md index 4b1e1ac..8a88100 100644 --- a/.github/ISSUE_TEMPLATE/obsolete-a-term.md +++ b/.github/ISSUE_TEMPLATE/obsolete-a-term.md @@ -1,22 +1,18 @@ --- name: Obsolete a term about: Obsolete or deprecate an existing AgrO term -title: "[Obsolete]" -labels: obsolete +title: "[Obsolete] " +labels: term-mod assignees: KrishnaTO # Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) --- -**AgrO term (ID and Label)** +**AgrO term (ID and Label)**: +**Reason for deprecation**: -**Reason for deprecation** - - -**Suggested term to consider** - - -**Your nano-attribution (ORCID)** -If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) +**Suggested term to consider**: +**Your nano-attribution (ORCID)**: +> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/qc.md b/.github/ISSUE_TEMPLATE/qc.md index b084fab..e38d46b 100644 --- a/.github/ISSUE_TEMPLATE/qc.md +++ b/.github/ISSUE_TEMPLATE/qc.md @@ -1,6 +1,6 @@ --- name: Quality Control -about: Quality Control issues +about: Quality Control issues, addressing automated reports (ie. ROBOT report) or workflows modifications/suggestions title: '' labels: QC assignees: KrishnaTO diff --git a/.github/ISSUE_TEMPLATE/relabel-term.md b/.github/ISSUE_TEMPLATE/relabel-term.md index a4b069d..beca33d 100644 --- a/.github/ISSUE_TEMPLATE/relabel-term.md +++ b/.github/ISSUE_TEMPLATE/relabel-term.md @@ -1,22 +1,19 @@ --- name: Relabel term -about: Suggested revised label for a AgrO term. -title: '' -labels: relabel term -assignees: KrishnaTO +about: Suggested revised label (IAO_0000115) for a AgrO term. +title: '[Label] ' +labels: term-annot +assignees: krishnaTO # Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) --- -**AgrO term (ID and Label):** +**AgrO term (ID and Label)**: +**Suggested new label:**: -**Suggested new label:** - - -**Your nano-attribution (ORCID)** -If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) - - -**_Optional_: Any additional information (like supporting evidence, PubMed ID, etc.)** +**_Optional_**: +> Any additional information (like supporting evidence, PubMed ID, etc.) +**Your nano-attribution (ORCID)**: +> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/revise-logical-definition.md b/.github/ISSUE_TEMPLATE/revise-logical-definition.md index 4221d5c..9b0cd6b 100644 --- a/.github/ISSUE_TEMPLATE/revise-logical-definition.md +++ b/.github/ISSUE_TEMPLATE/revise-logical-definition.md @@ -1,19 +1,16 @@ --- -name: Revise logical definition -about: Improve the OWL-DL statement of a AgrO term -title: "[Revise logical def]" -labels: logical def -assignees: KrishnaTO +name: Revise logical definition in subdomain +about: Improve the OWL-DL statement of a AgrO term; issues involving terms in multiple ontologies, overclassified/overgeneralized subdomain terms (ie. subdomain= Fertilizer) +title: "" +labels: term-logic +assignees: krishnaTO # Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) --- -**AgrO term (ID and Label)** +**AgrO term (ID and Label)**: +**Suggested revision of logical definition**: -**Suggested revision of logical definition** - - -**Your nano-attribution (ORCID)** -If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) - +**Your nano-attribution (ORCID)**: +> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/revise-subclass-relationship.md b/.github/ISSUE_TEMPLATE/revise-subclass-relationship.md index 77eeb11..5848a88 100644 --- a/.github/ISSUE_TEMPLATE/revise-subclass-relationship.md +++ b/.github/ISSUE_TEMPLATE/revise-subclass-relationship.md @@ -1,19 +1,16 @@ --- name: Revise subclass relationship -about: Revise the subclass structure for AgrO terms. -title: "[Revise subclass]" -labels: Revise subclass -assignees: KrishnaTO +about: Revise the subclass structure for AgrO terms; relating to `Equivalent To` or `SubClass Of` axioms for a term +title: "[Axiom] " +labels: term-logic +assignees: krishnaTO # Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) --- -**AgrO term (ID and Label)** +**AgrO term (ID and Label)**: +**Suggested revision and reasons**: -**Suggested revision and reasons** - - -**Your nano-attribution (ORCID)** -If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) - +**Your nano-attribution (ORCID)**: +> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/revise-textual-definition.md b/.github/ISSUE_TEMPLATE/revise-textual-definition.md index 324dcbc..cd6c36a 100644 --- a/.github/ISSUE_TEMPLATE/revise-textual-definition.md +++ b/.github/ISSUE_TEMPLATE/revise-textual-definition.md @@ -1,21 +1,17 @@ --- name: Revise textual definition about: Change the textual definition of an AgrO term -title: "[Revise text def]" -labels: '' +title: "[Def] " +labels: term-annot assignees: KrishnaTO # Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) --- -**AgrO term (ID and Label)** - - -**Suggested revision of textual definition. Please include a source, like a website** - - -**Your nano-attribution (ORCID)** -If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) - +**AgrO term (ID and Label):** +**Suggested revision of textual definition**: +> Please include a source, like a website (or permalink) +**Your nano-attribution (ORCID)**: +> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/split-term.md b/.github/ISSUE_TEMPLATE/split-term.md index dc366a9..5b65abc 100644 --- a/.github/ISSUE_TEMPLATE/split-term.md +++ b/.github/ISSUE_TEMPLATE/split-term.md @@ -1,22 +1,20 @@ --- name: Split term about: Request to split a term into two or more terms -title: 'split term: ' -labels: split +title: '[Split] ' +labels: term-add assignees: KrishnaTO # Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) --- -**Term to split:** +**Term to split**: +**Name for new terms**: +> Note - when a term should be split, there should be 2+ new terms. Please list the new labels below. -**Name for new terms:** Note - when a term should be split, there should be 2+ new terms. Please list the new labels below. - - -**List properties that should be moved to new term:** Note- Most properties (such as synonyms and database cross references) will move to the generic term. - - -**Your nano-attribution (ORCID)** -If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) +**List properties that should be moved to new term**: +> Note- Most properties (such as synonyms and database cross references) will move to the generic term. +**Your nano-attribution (ORCID)**: +> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/typos-bugs-errors.md b/.github/ISSUE_TEMPLATE/typos-bugs-errors.md index d7d5a1b..cfd4f1d 100644 --- a/.github/ISSUE_TEMPLATE/typos-bugs-errors.md +++ b/.github/ISSUE_TEMPLATE/typos-bugs-errors.md @@ -8,11 +8,9 @@ assignees: KrishnaTO --- -**AgrO term (ID Label)** +**AgrO term (ID and Label):** +**Bug/Typo/Error description**: -**Bug/Typo/Error description** - - -**Your nano-attribution (ORCID)** -If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) +**Your nano-attribution (ORCID)**: +> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) From 7bd17222b65e353e2120ef63104effafb8ed2792 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 24 Oct 2021 13:23:27 -0400 Subject: [PATCH 2/7] Add files via upload --- .github/ISSUE_TEMPLATE/add-synonym.yml | 44 ++++++++++++++++++++++++++ 1 file changed, 44 insertions(+) create mode 100644 .github/ISSUE_TEMPLATE/add-synonym.yml diff --git a/.github/ISSUE_TEMPLATE/add-synonym.yml b/.github/ISSUE_TEMPLATE/add-synonym.yml new file mode 100644 index 0000000..295d8e2 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/add-synonym.yml @@ -0,0 +1,44 @@ +name: Add synonym +description: New synonym suggestion for an existing AgrO term. +title: '[Synonym] ' +labels: term-annot +assignees: KrishnaTO +# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) + +body: + - type: input + id: term + attributes: + label: AgrO term + description: ID and Label + placeholder: `[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)` + validations: + required: true + - type: input + id: add + attributes: + label: Synonym to be added + description: ie, broad/exact/narrow/related + validations: + required: true + - type: input + id: subtype + attributes: + label: Synonym subtype + description: ie, broad/exact/narrow/related + validations: + required: false + - type: input + id: ref + attributes: + label: Database cross reference for the synonym + description: Such as PURL, source (website) or a cross-reference to another ontology, like ENVO or PATO. + validations: + required: false + - type: input + id: attribution + attributes: + label: Your nano-attribution (ORCID) + description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) + validations: + required: false From 298e4297cf89ce143a4b098aff24dfca549c4e43 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 24 Oct 2021 13:24:28 -0400 Subject: [PATCH 3/7] Rename add-synonym.md to add-synonym-old.md --- .github/ISSUE_TEMPLATE/{add-synonym.md => add-synonym-old.md} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename .github/ISSUE_TEMPLATE/{add-synonym.md => add-synonym-old.md} (100%) diff --git a/.github/ISSUE_TEMPLATE/add-synonym.md b/.github/ISSUE_TEMPLATE/add-synonym-old.md similarity index 100% rename from .github/ISSUE_TEMPLATE/add-synonym.md rename to .github/ISSUE_TEMPLATE/add-synonym-old.md From 4028033c3caf994985fee4b39f712e09d2681c51 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 24 Oct 2021 13:37:42 -0400 Subject: [PATCH 4/7] Update add-synonym.yml --- .github/ISSUE_TEMPLATE/add-synonym.yml | 28 ++++++++++++-------------- 1 file changed, 13 insertions(+), 15 deletions(-) diff --git a/.github/ISSUE_TEMPLATE/add-synonym.yml b/.github/ISSUE_TEMPLATE/add-synonym.yml index 295d8e2..7994035 100644 --- a/.github/ISSUE_TEMPLATE/add-synonym.yml +++ b/.github/ISSUE_TEMPLATE/add-synonym.yml @@ -1,44 +1,42 @@ name: Add synonym description: New synonym suggestion for an existing AgrO term. title: '[Synonym] ' -labels: term-annot +labels: [term-annot] assignees: KrishnaTO -# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) - body: - type: input id: term attributes: - label: AgrO term + label: AgrO term description: ID and Label - placeholder: `[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)` - validations: - required: true + placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)" + validations: + required: true - type: input id: add attributes: label: Synonym to be added description: ie, broad/exact/narrow/related - validations: - required: true + validations: + required: true - type: input id: subtype attributes: label: Synonym subtype description: ie, broad/exact/narrow/related - validations: - required: false + validations: + required: false - type: input id: ref attributes: label: Database cross reference for the synonym description: Such as PURL, source (website) or a cross-reference to another ontology, like ENVO or PATO. - validations: - required: false + validations: + required: false - type: input id: attribution attributes: label: Your nano-attribution (ORCID) description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) - validations: - required: false + validations: + required: false From f27642393e127f3539fdebd518b7ac10ba4c3c4b Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 24 Oct 2021 13:38:22 -0400 Subject: [PATCH 5/7] Update add-synonym-old.md --- .github/ISSUE_TEMPLATE/add-synonym-old.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/ISSUE_TEMPLATE/add-synonym-old.md b/.github/ISSUE_TEMPLATE/add-synonym-old.md index 22dae9e..7cf0d56 100644 --- a/.github/ISSUE_TEMPLATE/add-synonym-old.md +++ b/.github/ISSUE_TEMPLATE/add-synonym-old.md @@ -1,5 +1,5 @@ --- -name: Add synonym +name: Add synonym (old) about: New synonym suggestion for an existing AgrO term. title: '[Synonym] ' labels: term-annot From a486fd428157904c38fd08b1acc94ac1e4371373 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 24 Oct 2021 15:08:06 -0400 Subject: [PATCH 6/7] Adopt github issue forms --- .github/ISSUE_TEMPLATE/add-synonym.yml | 6 ++- .github/ISSUE_TEMPLATE/add-term.md | 25 --------- .github/ISSUE_TEMPLATE/add-term.yml | 54 +++++++++++++++++++ .../ISSUE_TEMPLATE/{custom.md => custom.yml} | 9 +--- .github/ISSUE_TEMPLATE/fix-xref.md | 18 ------- .github/ISSUE_TEMPLATE/fix-xref.yml | 39 ++++++++++++++ .github/ISSUE_TEMPLATE/mergeTerm.md | 18 ------- .github/ISSUE_TEMPLATE/mergeTerm.yml | 39 ++++++++++++++ .github/ISSUE_TEMPLATE/obsolete-a-term.md | 18 ------- .github/ISSUE_TEMPLATE/obsolete-a-term.yml | 37 +++++++++++++ .github/ISSUE_TEMPLATE/{qc.md => qc.yml} | 9 +--- .github/ISSUE_TEMPLATE/relabel-term.md | 19 ------- .github/ISSUE_TEMPLATE/relabel-term.yml | 39 ++++++++++++++ .../revise-logical-definition.md | 16 ------ .../revise-logical-definition.yml | 32 +++++++++++ .../revise-subclass-relationship.md | 16 ------ .../revise-subclass-relationship.yml | 37 +++++++++++++ .../revise-textual-definition.md | 17 ------ .../revise-textual-definition.yml | 31 +++++++++++ .github/ISSUE_TEMPLATE/split-term.md | 20 ------- .github/ISSUE_TEMPLATE/split-term.yml | 39 ++++++++++++++ .github/ISSUE_TEMPLATE/typos-bugs-errors.md | 16 ------ .github/ISSUE_TEMPLATE/typos-bugs-errors.yml | 29 ++++++++++ 23 files changed, 383 insertions(+), 200 deletions(-) delete mode 100644 .github/ISSUE_TEMPLATE/add-term.md create mode 100644 .github/ISSUE_TEMPLATE/add-term.yml rename .github/ISSUE_TEMPLATE/{custom.md => custom.yml} (50%) delete mode 100644 .github/ISSUE_TEMPLATE/fix-xref.md create mode 100644 .github/ISSUE_TEMPLATE/fix-xref.yml delete mode 100644 .github/ISSUE_TEMPLATE/mergeTerm.md create mode 100644 .github/ISSUE_TEMPLATE/mergeTerm.yml delete mode 100644 .github/ISSUE_TEMPLATE/obsolete-a-term.md create mode 100644 .github/ISSUE_TEMPLATE/obsolete-a-term.yml rename .github/ISSUE_TEMPLATE/{qc.md => qc.yml} (52%) delete mode 100644 .github/ISSUE_TEMPLATE/relabel-term.md create mode 100644 .github/ISSUE_TEMPLATE/relabel-term.yml delete mode 100644 .github/ISSUE_TEMPLATE/revise-logical-definition.md create mode 100644 .github/ISSUE_TEMPLATE/revise-logical-definition.yml delete mode 100644 .github/ISSUE_TEMPLATE/revise-subclass-relationship.md create mode 100644 .github/ISSUE_TEMPLATE/revise-subclass-relationship.yml delete mode 100644 .github/ISSUE_TEMPLATE/revise-textual-definition.md create mode 100644 .github/ISSUE_TEMPLATE/revise-textual-definition.yml delete mode 100644 .github/ISSUE_TEMPLATE/split-term.md create mode 100644 .github/ISSUE_TEMPLATE/split-term.yml delete mode 100644 .github/ISSUE_TEMPLATE/typos-bugs-errors.md create mode 100644 .github/ISSUE_TEMPLATE/typos-bugs-errors.yml diff --git a/.github/ISSUE_TEMPLATE/add-synonym.yml b/.github/ISSUE_TEMPLATE/add-synonym.yml index 7994035..1af2392 100644 --- a/.github/ISSUE_TEMPLATE/add-synonym.yml +++ b/.github/ISSUE_TEMPLATE/add-synonym.yml @@ -12,7 +12,8 @@ body: placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)" validations: required: true - - type: input + + - type: textarea id: add attributes: label: Synonym to be added @@ -26,7 +27,8 @@ body: description: ie, broad/exact/narrow/related validations: required: false - - type: input + + - type: textarea id: ref attributes: label: Database cross reference for the synonym diff --git a/.github/ISSUE_TEMPLATE/add-term.md b/.github/ISSUE_TEMPLATE/add-term.md deleted file mode 100644 index 677bdc6..0000000 --- a/.github/ISSUE_TEMPLATE/add-term.md +++ /dev/null @@ -1,25 +0,0 @@ ---- -name: Add new term -about: New term suggestion for AgrO -title: "[NTR] " -labels: term-add -assignees: KrishnaTO -# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) - ---- - -**Preferred term label**: - -**Synonyms**: - -**Definition**: -> please give PubMed ID, if applicable [PMID:#######] - -**Parent term**: -> use [OLS](https://www.ebi.ac.uk/ols/ontologies/AgrO), or your favorite ontology browser - -**Children terms (if applicable)**: -> Should any existing terms that should be moved underneath this new proposed term? - -**Your nano-attribution (ORCID)**: -> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/add-term.yml b/.github/ISSUE_TEMPLATE/add-term.yml new file mode 100644 index 0000000..fd8e2b7 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/add-term.yml @@ -0,0 +1,54 @@ +name: Add new term +description: New term suggestion for AgrO +title: "[NTR] " +labels: [term-add] +assignees: KrishnaTO +# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) +body: + - type: input + id: term + attributes: + label: AgrO term + description: ID and Label + placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)" + validations: + required: true + + - type: textarea + id: Synonyms + attributes: + label: Synonyms + validations: + required: false + + - type: textarea + id: Definition + attributes: + label: Definition + description: please give PubMed ID, if applicable [PMID:#######] + validations: + required: true + + - type: input + id: Parent + attributes: + label: Parent term + description: use [OLS](https://www.ebi.ac.uk/ols/ontologies/AgrO), or your favorite ontology browser + validations: + required: true + + - type: textarea + id: Children + attributes: + label: Children terms + description: Should any existing terms that should be moved underneath this new proposed term? + validations: + required: false + + - type: input + id: attribution + attributes: + label: Your nano-attribution (ORCID) + description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) + validations: + required: false diff --git a/.github/ISSUE_TEMPLATE/custom.md b/.github/ISSUE_TEMPLATE/custom.yml similarity index 50% rename from .github/ISSUE_TEMPLATE/custom.md rename to .github/ISSUE_TEMPLATE/custom.yml index 4fa6ca8..ec4f743 100644 --- a/.github/ISSUE_TEMPLATE/custom.md +++ b/.github/ISSUE_TEMPLATE/custom.yml @@ -1,11 +1,4 @@ ---- name: Custom issue template -about: When the issue isn't defined by other templates. Please provide as many references to resources mentioned as timely available. -title: '' -labels: '' +description: When the issue isn't defined by other templates. Please provide as many references to resources mentioned as timely available. assignees: krishnaTO # Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) - ---- - - diff --git a/.github/ISSUE_TEMPLATE/fix-xref.md b/.github/ISSUE_TEMPLATE/fix-xref.md deleted file mode 100644 index 14fb28e..0000000 --- a/.github/ISSUE_TEMPLATE/fix-xref.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -name: Fix/Add xref (source link, ex. for definitions) -about: Report issue about incorrect xref source on term. -title: '[xRef] ' -labels: term-annot -assignees: KrishnaTO -# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) - ---- - -**AgrO term (ID and Label)**: - -**Xref that should be fixed (ID and label)**: - -**Other comments**: - -**Your nano-attribution (ORCID)**: -> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/fix-xref.yml b/.github/ISSUE_TEMPLATE/fix-xref.yml new file mode 100644 index 0000000..9012147 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/fix-xref.yml @@ -0,0 +1,39 @@ +name: Fix/Add xref (source link, ex. for definitions) +description: Report issue about incorrect xref source on term. +title: '[xRef] ' +labels: [term-annot] +assignees: KrishnaTO +# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) +body: + - type: input + id: term + attributes: + label: AgrO term + description: ID and Label + placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)" + validations: + required: true + + - type: textarea + id: Xref + attributes: + label: Xref that should be fixed + description: ID and label + validations: + required: false + + - type: textarea + id: Comments + attributes: + label: Comments + validations: + required: false + + - type: input + id: attribution + attributes: + label: Your nano-attribution (ORCID) + description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) + validations: + required: false + diff --git a/.github/ISSUE_TEMPLATE/mergeTerm.md b/.github/ISSUE_TEMPLATE/mergeTerm.md deleted file mode 100644 index 08166d6..0000000 --- a/.github/ISSUE_TEMPLATE/mergeTerm.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -name: Merge two terms -about: Merge with another AgrO term and obsolete/deprecate an existing AgrO term -title: "[Merge] " -labels: term-mod -assignees: KrishnaTO -# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) - ---- - -**AgrO term (ID and Label)**: - -**Reason for deprecation**: - -**Term to be merged with**: - -**Your nano-attribution (ORCID)**: -> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/mergeTerm.yml b/.github/ISSUE_TEMPLATE/mergeTerm.yml new file mode 100644 index 0000000..0c157b5 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/mergeTerm.yml @@ -0,0 +1,39 @@ +name: Merge two terms +description: Merge with another AgrO term and obsolete/deprecate an existing AgrO term +title: "[Merge] " +labels: [term-mod] +assignees: KrishnaTO +# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) +body: + - type: input + id: term + attributes: + label: AgrO term + description: ID and Label + placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)" + validations: + required: true + + - type: textarea + id: Reason + attributes: + label: Reason for deprecation + validations: + required: true + + - type: textarea + id: merge + attributes: + label: Term to be merged with + validations: + required: true + + - type: input + id: attribution + attributes: + label: Your nano-attribution (ORCID) + description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) + validations: + required: false + + diff --git a/.github/ISSUE_TEMPLATE/obsolete-a-term.md b/.github/ISSUE_TEMPLATE/obsolete-a-term.md deleted file mode 100644 index 8a88100..0000000 --- a/.github/ISSUE_TEMPLATE/obsolete-a-term.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -name: Obsolete a term -about: Obsolete or deprecate an existing AgrO term -title: "[Obsolete] " -labels: term-mod -assignees: KrishnaTO -# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) - ---- - -**AgrO term (ID and Label)**: - -**Reason for deprecation**: - -**Suggested term to consider**: - -**Your nano-attribution (ORCID)**: -> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/obsolete-a-term.yml b/.github/ISSUE_TEMPLATE/obsolete-a-term.yml new file mode 100644 index 0000000..63d7a7c --- /dev/null +++ b/.github/ISSUE_TEMPLATE/obsolete-a-term.yml @@ -0,0 +1,37 @@ +name: Obsolete a term +description: Obsolete or deprecate an existing AgrO term +title: "[Obsolete] " +labels: [term-mod] +assignees: KrishnaTO +# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) +body: + - type: input + id: term + attributes: + label: AgrO term + description: ID and Label + placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)" + validations: + required: true + + - type: textarea + id: deprecation + attributes: + label: Reason for deprecation + validations: + required: true + + - type: input + id: Suggested + attributes: + label: Suggested term to consider + validations: + required: false + + - type: input + id: attribution + attributes: + label: Your nano-attribution (ORCID) + description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) + validations: + required: false diff --git a/.github/ISSUE_TEMPLATE/qc.md b/.github/ISSUE_TEMPLATE/qc.yml similarity index 52% rename from .github/ISSUE_TEMPLATE/qc.md rename to .github/ISSUE_TEMPLATE/qc.yml index e38d46b..ece2990 100644 --- a/.github/ISSUE_TEMPLATE/qc.md +++ b/.github/ISSUE_TEMPLATE/qc.yml @@ -1,10 +1,5 @@ ---- name: Quality Control -about: Quality Control issues, addressing automated reports (ie. ROBOT report) or workflows modifications/suggestions -title: '' -labels: QC +description: Quality Control issues, addressing automated reports (ie. ROBOT report) or workflows modifications/suggestions +labels: [QC] assignees: KrishnaTO # Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) - ---- - diff --git a/.github/ISSUE_TEMPLATE/relabel-term.md b/.github/ISSUE_TEMPLATE/relabel-term.md deleted file mode 100644 index beca33d..0000000 --- a/.github/ISSUE_TEMPLATE/relabel-term.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -name: Relabel term -about: Suggested revised label (IAO_0000115) for a AgrO term. -title: '[Label] ' -labels: term-annot -assignees: krishnaTO -# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) - ---- - -**AgrO term (ID and Label)**: - -**Suggested new label:**: - -**_Optional_**: -> Any additional information (like supporting evidence, PubMed ID, etc.) - -**Your nano-attribution (ORCID)**: -> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/relabel-term.yml b/.github/ISSUE_TEMPLATE/relabel-term.yml new file mode 100644 index 0000000..9c86a54 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/relabel-term.yml @@ -0,0 +1,39 @@ +name: Relabel term +description: Suggested revised label (IAO_0000115) for a AgrO term. +title: '[Label] ' +labels: [term-annot] +assignees: krishnaTO +# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) +body: + - type: input + id: term + attributes: + label: AgrO term + description: ID and Label + placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)" + validations: + required: true + + - type: input + id: label + attributes: + label: Suggested new label + validations: + required: true + + - type: textarea + id: Additional + attributes: + label: Additional information + description: Any additional information (like supporting evidence, PubMed ID, etc.) + validations: + required: false + + - type: input + id: attribution + attributes: + label: Your nano-attribution (ORCID) + description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) + validations: + required: false + diff --git a/.github/ISSUE_TEMPLATE/revise-logical-definition.md b/.github/ISSUE_TEMPLATE/revise-logical-definition.md deleted file mode 100644 index 9b0cd6b..0000000 --- a/.github/ISSUE_TEMPLATE/revise-logical-definition.md +++ /dev/null @@ -1,16 +0,0 @@ ---- -name: Revise logical definition in subdomain -about: Improve the OWL-DL statement of a AgrO term; issues involving terms in multiple ontologies, overclassified/overgeneralized subdomain terms (ie. subdomain= Fertilizer) -title: "" -labels: term-logic -assignees: krishnaTO -# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) - ---- - -**AgrO term (ID and Label)**: - -**Suggested revision of logical definition**: - -**Your nano-attribution (ORCID)**: -> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/revise-logical-definition.yml b/.github/ISSUE_TEMPLATE/revise-logical-definition.yml new file mode 100644 index 0000000..81c6e0e --- /dev/null +++ b/.github/ISSUE_TEMPLATE/revise-logical-definition.yml @@ -0,0 +1,32 @@ +name: Revise logical definition in subdomain +description: Improve the OWL-DL statement of a AgrO term; issues involving terms in multiple ontologies, overclassified/overgeneralized subdomain terms (ie. subdomain= Fertilizer) +labels: [term-logic] +assignees: krishnaTO +# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) +body: + - type: input + id: term + attributes: + label: AgrO term + description: ID and Label + placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)" + validations: + required: true + + - type: textarea + id: definition + attributes: + label: Suggested revision of logical definition + validations: + required: false + + - type: input + id: attribution + attributes: + label: Your nano-attribution (ORCID) + description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) + validations: + required: false + + + diff --git a/.github/ISSUE_TEMPLATE/revise-subclass-relationship.md b/.github/ISSUE_TEMPLATE/revise-subclass-relationship.md deleted file mode 100644 index 5848a88..0000000 --- a/.github/ISSUE_TEMPLATE/revise-subclass-relationship.md +++ /dev/null @@ -1,16 +0,0 @@ ---- -name: Revise subclass relationship -about: Revise the subclass structure for AgrO terms; relating to `Equivalent To` or `SubClass Of` axioms for a term -title: "[Axiom] " -labels: term-logic -assignees: krishnaTO -# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) - ---- - -**AgrO term (ID and Label)**: - -**Suggested revision and reasons**: - -**Your nano-attribution (ORCID)**: -> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/revise-subclass-relationship.yml b/.github/ISSUE_TEMPLATE/revise-subclass-relationship.yml new file mode 100644 index 0000000..a0339a9 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/revise-subclass-relationship.yml @@ -0,0 +1,37 @@ +name: Revise subclass relationship +description: Revise the subclass structure for AgrO terms; relating to `Equivalent To` or `SubClass Of` axioms for a term +title: "[Axiom] " +labels: [term-logic] +assignees: krishnaTO +# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) +body: + - type: input + id: term + attributes: + label: AgrO term + description: ID and Label + placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)" + validations: + required: true + + - type: input + id: revision + attributes: + label: Suggested revision + validations: + required: false + + - type: textarea + id: reason + attributes: + label: Suggestion reasons + validations: + required: false + + - type: input + id: attribution + attributes: + label: Your nano-attribution (ORCID) + description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) + validations: + required: false diff --git a/.github/ISSUE_TEMPLATE/revise-textual-definition.md b/.github/ISSUE_TEMPLATE/revise-textual-definition.md deleted file mode 100644 index cd6c36a..0000000 --- a/.github/ISSUE_TEMPLATE/revise-textual-definition.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -name: Revise textual definition -about: Change the textual definition of an AgrO term -title: "[Def] " -labels: term-annot -assignees: KrishnaTO -# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) - ---- - -**AgrO term (ID and Label):** - -**Suggested revision of textual definition**: -> Please include a source, like a website (or permalink) - -**Your nano-attribution (ORCID)**: -> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/revise-textual-definition.yml b/.github/ISSUE_TEMPLATE/revise-textual-definition.yml new file mode 100644 index 0000000..08543f0 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/revise-textual-definition.yml @@ -0,0 +1,31 @@ +name: Revise textual definition +description: Change the textual definition of an AgrO term +title: "[Def] " +labels: [term-annot] +assignees: KrishnaTO +# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) +body: + - type: input + id: term + attributes: + label: AgrO term + description: ID and Label + placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)" + validations: + required: true + + - type: textarea + id: definition + attributes: + label: Suggested revision of textual definition + description: Please include a source, like a website (or permalink) + validations: + required: false + + - type: input + id: attribution + attributes: + label: Your nano-attribution (ORCID) + description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) + validations: + required: false \ No newline at end of file diff --git a/.github/ISSUE_TEMPLATE/split-term.md b/.github/ISSUE_TEMPLATE/split-term.md deleted file mode 100644 index 5b65abc..0000000 --- a/.github/ISSUE_TEMPLATE/split-term.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -name: Split term -about: Request to split a term into two or more terms -title: '[Split] ' -labels: term-add -assignees: KrishnaTO -# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) - ---- - -**Term to split**: - -**Name for new terms**: -> Note - when a term should be split, there should be 2+ new terms. Please list the new labels below. - -**List properties that should be moved to new term**: -> Note- Most properties (such as synonyms and database cross references) will move to the generic term. - -**Your nano-attribution (ORCID)**: -> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/split-term.yml b/.github/ISSUE_TEMPLATE/split-term.yml new file mode 100644 index 0000000..beacf79 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/split-term.yml @@ -0,0 +1,39 @@ +name: Split term +description: Request to split a term into two or more terms +title: '[Split] ' +labels: [term-add] +assignees: KrishnaTO +# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) +body: + - type: input + id: term + attributes: + label: Term to split + description: ID and Label + placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)" + validations: + required: true + + - type: textarea + id: new + attributes: + label: Name for new terms + description: Note - when a term should be split, there should be 2+ new terms. Please list the new labels below. + validations: + required: true + + - type: textarea + id: properties + attributes: + label: List properties that should be moved to new term + description: Note- Most properties (such as synonyms and database cross references) will move to the generic term. + validations: + required: false + + - type: input + id: attribution + attributes: + label: Your nano-attribution (ORCID) + description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) + validations: + required: false diff --git a/.github/ISSUE_TEMPLATE/typos-bugs-errors.md b/.github/ISSUE_TEMPLATE/typos-bugs-errors.md deleted file mode 100644 index cfd4f1d..0000000 --- a/.github/ISSUE_TEMPLATE/typos-bugs-errors.md +++ /dev/null @@ -1,16 +0,0 @@ ---- -name: Typos/Bugs/Errors -about: Report all kinds of typos or bugs in AgrO -title: '' -labels: bug -assignees: KrishnaTO -# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) - ---- - -**AgrO term (ID and Label):** - -**Bug/Typo/Error description**: - -**Your nano-attribution (ORCID)**: -> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) diff --git a/.github/ISSUE_TEMPLATE/typos-bugs-errors.yml b/.github/ISSUE_TEMPLATE/typos-bugs-errors.yml new file mode 100644 index 0000000..54e9aa4 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/typos-bugs-errors.yml @@ -0,0 +1,29 @@ +name: Typos/Bugs/Errors +description: Report all kinds of typos or bugs in AgrO +labels: [bug] +assignees: KrishnaTO +# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE) +body: + - type: input + id: term + attributes: + label: AgrO term + description: ID and Label + placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)" + validations: + required: true + + - type: textarea + id: description + attributes: + label: Bug/Typo/Error description + validations: + required: false + + - type: input + id: attribution + attributes: + label: Your nano-attribution (ORCID) + description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) + validations: + required: false From ab1d88776b615911c3d8d39c55090966cad923a3 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 24 Oct 2021 15:16:11 -0400 Subject: [PATCH 7/7] Update README.md --- .github/ISSUE_TEMPLATE/README.md | 14 +++++--------- 1 file changed, 5 insertions(+), 9 deletions(-) diff --git a/.github/ISSUE_TEMPLATE/README.md b/.github/ISSUE_TEMPLATE/README.md index 2448535..792096b 100644 --- a/.github/ISSUE_TEMPLATE/README.md +++ b/.github/ISSUE_TEMPLATE/README.md @@ -45,14 +45,10 @@ Others: --- -## Fields -**AgrO term**: -> ID and Label (ie. `[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)`) +## Issue forms upgrade -**Suggested new label:**: +Used github issue forms template for new issues. +References: -**_Optional_**: -> Any additional information (like supporting evidence, PubMed ID, etc.) - -**Your nano-attribution (ORCID)**: -> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/) \ No newline at end of file +- [Github Community - Issue Template](https://gh-community.github.io/issue-template-feedback/structured/) +- [Github Docs](https://docs.github.com/en/communities/using-templates-to-encourage-useful-issues-and-pull-requests/configuring-issue-templates-for-your-repository#creating-issue-templates)