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.Rhistory
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library(devtools)
use_package("parsec")
use_r("MARMoT")
devtools::load_all(".")
devtools::load_all(".")
MARMoT()
q
?MARMoT
devtools::load_all(".")
devtools::load_all(".")
library(devtools)
use_r("ASB")
devtools::load_all(".")
ASB()
MARMoT::MARMoT()
devtools::load_all(".")
devtools::load_all(".")
devtools::load_all(".")
devtools::load_all(".")
devtools::load_all(".")
devtools::load_all(".")
devtools::load_all(".")
library(MARMoT)
devtools::load_all(".")
library(MARMoT)
devtools::load_all(".")
library(MARMoT)
devtools::load_all(".")
library(MARMoT)
devtools::load_all(".")
library(MARMoT)
devtools::load_all(".")
library(MARMoT)
devtools::load_all(".")
library(MARMoT)
??ggcorr
?corr
?cor
devtools::load_all(".")
?MARMoT()
?cor
devtools::load_all(".")
?MARMoT()
?MARMoT()
?MARMoT()
?ASB
?ASB
?MARMoT()
?ASB
?cor
df
quantile
library(devtools)
use_package("stats")
use_gpl3_license()
cor()
?cor()
library(MARMoT)
rm(list=ls())
if(system.file(package="rstudioapi") == "") install.packages("rstudioapi")
setwd(dirname(rstudioapi::getSourceEditorContext()$path))
dati = readRDS("Dati/dati_FINAL.rds")
dim(dati)
colnames(dati)
if(system.file(package="parsec") == "") install.packages("parsec")
options(digits=15) #è solo grafica
treatment = "PRVDR_NUM" #<---
confounders = c("BENE_SEX_IDENT_CD", "NEW_PROCED", "NEW_COMORBIDITIES", "NEW_RACE", "NEW_AGE_CAT5") #<---
#source("MARMoT.R")
#set.seed(12345)
library(MARMoT)
MARMoT_time = Sys.time()
out = MARMoT(data = dati, confounders = confounders, treatment = treatment, reference = "median", n.cores = 6)
MARMoT_time = Sys.time() - MARMoT_time
dati.balanced
dati.balanced = out$balanced_data
dati.balanced
out
usethis::use_testthat()
use_test()
lybr
library(devtools)
use_test()
rhub::check_for_cran()
install.packages("rhub")
rhub::check_for_cran()
rhub::check_for_cran()
load("/home/alberto/SynologyDrive/Statistica/Tesi/Pacchetto R tesi/example_data.rda")
library(devtools)
use_data(example_data)
use_r("data")
devtools::load_all(".")
devtools::load_all(".")
devtools::load_all(".")
use_package("parallel")
rhub::check_for_cran()
library(devtools)
use_test()
library(testthat)
?expect_length()
load("/home/alberto/SynologyDrive/Statistica/Tesi/Pacchetto R tesi/example_data.rda")
nrow(example_data)
devtools::load_all(".")
deloof(example_data)
rm(list=ls())
if(system.file(package="rstudioapi") == "") install.packages("rstudioapi")
setwd(dirname(rstudioapi::getSourceEditorContext()$path))
dati = readRDS("Dati/dati_FINAL.rds")
dim(dati)
colnames(dati)
if(system.file(package="parsec") == "") install.packages("parsec")
options(digits=15) #è solo grafica
# Variabili funzione marmot -----------------------------------------------
treatment = "PRVDR_NUM" #<---
#confounders = c("BENE_SEX_IDENT_CD", "NEW_PROCED", "NEW_COMORBIDITIES", "NEW_RACE", "NEW_AGE_CAT5") #<---
confounders = c("NEW_RACE", "NEW_AGE_CAT5") #<---
# MARMoT ------------------------------------------------------------------
#source("MARMoT.R")
set.seed(1234)
library(MARMoT)
MARMoT_time = Sys.time()
out = MARMoT(data = dati, confounders = confounders, treatment = treatment, reference = "median", n.cores = 6)
MARMoT_time = Sys.time() - MARMoT_time
dati.balanced = out$balanced_data
# Note --------------------------------------------------------------------
dim(dati.balanced)
MARMoT_data = dati[, c(treatment, confounders)]
colnames(MARMoT_data) = c("hospital", "race", "age")
save(MARMoT_data, file = "MARMoT_data.rda")
deloof_data = dati[, confounders]
deloof_data = dati[, c("NEW_COMORBIDITIES","NEW_AGE_CAT5")]
colnames(deloof_data) = c("comorbidities", "age")
deloof_data
colnames(deloof_data) = c("comorbidities", "age")
save(deloof_data, file = "deloof_data.rda")
devtools::load_all(".")
data("MARMoT_data")
str(MARMoT_data)
data("deloof_data")
str(deloof_data)
devtools::load_all(".")
library(devtools)
use_data(deloof_data)
devtools::load_all(".")
rhub::check_for_cran()
use_test()
devtools::load_all(".")
data("MARMoT_data")
ASB(MARMoT_data)
ASB(data = MARMoT_data, confounders = c("race", "age"), treatment = "hospital")
use_test()
use_test()
length(ASB(data = MARMoT_data, confounders = c("race", "age"), treatment = "hospital"))
MARMoT(data = MARMoT_data, confounders = c("race", "age"), treatment = "hospital", n.cores = 1)
length(MARMoT(data = MARMoT_data, confounders = c("race", "age"), treatment = "hospital", n.cores = 1))
devtools::load_all(".")
?ggcorrplot
??ggcorrplot
devtools::load_all(".")
devtools::load_all(".")
devtools::load_all(".")
devtools::load_all(".")
rhub::check_for_cran()
rhub::check_for_cran()
devtools::check()
devtools::check_rhub()
devtools::check_win_devel()
devtools::document()
devtools::spell_check()
devtools::spell_check()
devtools::spell_check()
#optional
inteRgrate::check_lintr()
install.packages("inteRgrate")
#blogpost
devtools::test()
devtools::test_coverage()
devtools::run_examples()
devtools::document()
devtools::check()
revdepcheck::revdep_check()
install.packages("revdepcheck")
#revdepcheck::revdep_check()
#win check
devtools::use_readme_rmd()
#revdepcheck::revdep_check()
#win check
use_readme_rmd()
#revdepcheck::revdep_check()
#win check
devtools::use_readme_rmd()
devtools::build_readme()
#revdepcheck::revdep_check()
#win check
usethis::use_readme_rmd()
devtools::build_readme()
devtools::spell_check()
devtools::build_readme()
devtools::build_readme()
library(MARMoT)
library(MARMoT)
devtools::load_all(".")
library(MARMoT)
rhub::check_for_cran()
rhub::check_for_cran()
devtools::load_all(".")
library(MARMoT)
?MARMoT
devtools::check()
rhub::check_for_cran()
devtools::check_rhub()
devtools::check_win_devel()
devtools::document()
devtools::spell_check()
#blogpost
devtools::test()
devtools::test_coverage()
devtools::run_examples()
devtools::document()
devtools::check()
#revdepcheck::revdep_check()
#win check
usethis::use_readme_rmd()
devtools::build_readme()
devtools::spell_check()
library(MARMoT)
Sys.info()["sysname"]
library(MARMoT)
library(MARMoT)
library(MARMoT)
?ASB
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
devtools::check()
rhub::check_for_cran()
library(MARMoT)
rhub::check_for_cran()
library(MARMoT)
rhub::check_for_cran()
devtools::check_rhub()
devtools::check_win_devel()
devtools::document()
devtools::spell_check()
#blogpost
devtools::test()
devtools::test_coverage()
devtools::run_examples()
devtools::document()
devtools::check()
#revdepcheck::revdep_check()
#win check
usethis::use_readme_rmd()
devtools::build_readme()
devtools::spell_check()
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
?MARMoT()
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
library(MARMoT)
@exportS3Method
S3method(generic_name, class_name)
??S3Methods
library(MARMoT)
devtools::check()
devtools::document()
devtools::spell_check()
library(MARMoT)
?MARMoT
??MARMoT
packageDescription("MARMoT")
?glm()
library(MARMoT)
?MARMoT::MARMoT()
library(MARMoT)
?MARMoT::MARMoT()
library(MARMoT)
?MARMoT::MARMoT()
library(MARMoT)
?MARMoT::MARMoT()
?abs
abline
?abline
library(MARMoT)
?MARMoT::MARMoT()
library(MARMoT)
?MARMoT::MARMoT()
?MASS::stepAIC()
install.packages()
installed.packages()
?nnet::nnet()
library(MARMoT)
packageDescription(nnet)
packageDescription("nnet")
packageDescription("mclust")
packageDescription("glm")
installed.packages()
packageDescription("cem")
library(MARMoT)
packageDescription("MARMoT")
library(MARMoT)
library(MARMoT)
packageDescription("MARMoT")
library(MARMoT)
packageDescription("MARMoT")
packageDescription("MARMoT")
library(MARMoT)
packageDescription("MARMoT")
library(MARMoT)
library(MARMoT)