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DESCRIPTION
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DESCRIPTION
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Package: BiocWorkshops
Type: Book
Title: Bioconductor 2018 Conference Workshops Repository
Version: 3.8.0
Depends: R (>= 3.5.0)
Imports:
airway,
ALL,
AnnotationDbi,
AnnotationFilter,
AnnotationHub,
apeglm,
aroma.light,
beachmat,
Biobase,
BiocParallel,
BiocStyle,
biomaRt,
bookdown,
BSgenome,
BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Hsapiens.UCSC.hg19.masked,
caret,
caTools,
clusterExperiment,
curatedMetagenomicData,
curatedTCGAData,
DECIPHER,
DelayedArray,
DelayedMatrixStats,
DESeq2,
doParallel,
downloader,
dplyr,
DT,
edgeR,
EnrichmentBrowser,
EnsDb.Hsapiens.v75,
EnsDb.Hsapiens.v79,
EnsDb.Hsapiens.v86,
EnsDb.Mmusculus.v79,
foreach,
gam,
gdata,
GenomicDataCommons,
GEOquery,
ggplot2,
ggraph,
Glimma,
glmnet,
h5vcData,
HDF5Array,
HMP16SData,
hgu95av2.db,
hgu133a.db,
Hmisc,
HMP16SData,
Homo.sapiens,
htmltools,
httr,
hugene20sttranscriptcluster.db,
isa,
jsonlite,
limma,
magrittr,
matrixStats (>= 0.52.2),
memuse,
mirbase.db,
mRMRe,
MultiAssayExperiment,
Mus.musculus,
org.Hs.eg.db,
Organism.dplyr,
parallel,
piano,
PharmacoGx,
pheatmap,
phyloseq,
phytools,
plyranges,
princurve,
R.methodsS3 (>= 1.7.1),
R.oo (>= 1.21.0),
R.utils (>= 2.6.0),
RaggedExperiment,
randomForest,
RColorBrewer,
Rcpp,
RCy3,
RCurl,
Rsamtools,
gProfileR,
readr,
recount,
regioneR,
ReportingTools,
reshape2,
rex,
rhdf5,
rhdf5client,
Rtsne,
rvest,
scone,
SingleCellExperiment,
slingshot,
splatter,
SRAdb,
statmod,
stringr,
SummarizedExperiment,
survival,
survminer,
TCGAutils,
TCGAbiolinks,
TENxBrainData,
tidygraph,
tidyr,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene,
tximport,
tximportData,
units,
UpSetR,
VariantAnnotation,
VennDiagram,
xml2,
xtable,
zinbwave
Remotes:
rstudio/bookdown,
seandavi/SRAdbV2,
jmacdon/Bioc2018Anno,
seandavi/BiocPkgTools,
npcooley/FindHomology,
drisso/fletcher2017data,
bhklab/mCI,
bhklab/PharmacoGxML