{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":518173287,"defaultBranch":"main","name":"LOGAN","ownerLogin":"CCBR","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-07-26T18:23:46.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/10426639?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1723841155.0","currentOid":""},"activityList":{"items":[{"before":"135a050dd72bc2f4bb481ccef3252442d43113a3","after":"d356aa4c4bebff4909d67e75092c93bb28ffb668","ref":"refs/heads/gridss","pushedAt":"2024-09-13T19:47:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: gripss output naming","shortMessageHtmlLink":"fix: gripss output naming"}},{"before":"7fffb7cec6671488f3d495b9046c04ae95382cf6","after":"135a050dd72bc2f4bb481ccef3252442d43113a3","ref":"refs/heads/gridss","pushedAt":"2024-09-13T19:47:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"feat: add genome_noalt","shortMessageHtmlLink":"feat: add genome_noalt"}},{"before":"69f12e7ef815cec0a3120b90ed027fd0b0a7ee37","after":"7fffb7cec6671488f3d495b9046c04ae95382cf6","ref":"refs/heads/gridss","pushedAt":"2024-09-13T19:47:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"refactor: don't repeat normal samples in pileup","shortMessageHtmlLink":"refactor: don't repeat normal samples in pileup"}},{"before":"1a3a500edd5ded173258a6d38a4389608dab605c","after":"69f12e7ef815cec0a3120b90ed027fd0b0a7ee37","ref":"refs/heads/gridss","pushedAt":"2024-09-13T19:46:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: output gridss correctly","shortMessageHtmlLink":"fix: output gridss correctly"}},{"before":"86a916d0f02b7de2db6dbd194b7d4811bc1fbb04","after":"1a3a500edd5ded173258a6d38a4389608dab605c","ref":"refs/heads/gridss","pushedAt":"2024-09-13T19:46:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"refactor: run germline on normals only","shortMessageHtmlLink":"refactor: run germline on normals only"}},{"before":"e963efddafab5efde1016db331af7e3c787e51b4","after":"86a916d0f02b7de2db6dbd194b7d4811bc1fbb04","ref":"refs/heads/gridss","pushedAt":"2024-09-12T14:27:16.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"chore: tag docker image correclty","shortMessageHtmlLink":"chore: tag docker image correclty"}},{"before":"74fa0f77ecc7ba66253a8bedb60f0e5c1cf2abcd","after":"e963efddafab5efde1016db331af7e3c787e51b4","ref":"refs/heads/gridss","pushedAt":"2024-09-12T14:26:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: fix paths for GRIPSS","shortMessageHtmlLink":"fix: fix paths for GRIPSS"}},{"before":"683c8e4ea22f3cb662ffa4da1bbac02abe155cb5","after":null,"ref":"refs/heads/docs_readme","pushedAt":"2024-08-16T20:45:55.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"}},{"before":"b799370704b72593cf929c94840613e817062daa","after":"40e890270481dae7ad6bfe744ef52c4853e3b3e5","ref":"refs/heads/main","pushedAt":"2024-08-16T20:45:54.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"Merge pull request #64 from CCBR/docs_readme\n\ndocs: Update readme","shortMessageHtmlLink":"Merge pull request #64 from CCBR/docs_readme"}},{"before":null,"after":"683c8e4ea22f3cb662ffa4da1bbac02abe155cb5","ref":"refs/heads/docs_readme","pushedAt":"2024-08-16T20:44:56.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"docs: Update readme","shortMessageHtmlLink":"docs: Update readme"}},{"before":"889a6d85e4bf67b2cf92a7f7a8c24a883a3f3b40","after":"74fa0f77ecc7ba66253a8bedb60f0e5c1cf2abcd","ref":"refs/heads/gridss","pushedAt":"2024-08-16T20:33:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: grdiss need bwa index","shortMessageHtmlLink":"fix: grdiss need bwa index"}},{"before":"43f7f6a195a3c7d3eb32d1190e19a77e160a9494","after":"889a6d85e4bf67b2cf92a7f7a8c24a883a3f3b40","ref":"refs/heads/gridss","pushedAt":"2024-08-16T18:14:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: sage reference file paths","shortMessageHtmlLink":"fix: sage reference file paths"}},{"before":"16e744eff558a34763c31b25b0128bc96a75762f","after":"43f7f6a195a3c7d3eb32d1190e19a77e160a9494","ref":"refs/heads/gridss","pushedAt":"2024-08-16T18:13:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"feat: gridss sv caller added","shortMessageHtmlLink":"feat: gridss sv caller added"}},{"before":"4e72987256f5e0f62aa7d4925ad7f967282aa414","after":"16e744eff558a34763c31b25b0128bc96a75762f","ref":"refs/heads/gridss","pushedAt":"2024-08-15T01:31:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: publish germline files correctly","shortMessageHtmlLink":"fix: publish germline files correctly"}},{"before":"f8dfed377c92b5b452e1e98735d133a6ed7cbce8","after":"4e72987256f5e0f62aa7d4925ad7f967282aa414","ref":"refs/heads/gridss","pushedAt":"2024-08-15T01:31:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"feat: split logan into qc and base package","shortMessageHtmlLink":"feat: split logan into qc and base package"}},{"before":"6fc2bba74b62bcf21e741d648ad268cc1bda512e","after":"f8dfed377c92b5b452e1e98735d133a6ed7cbce8","ref":"refs/heads/gridss","pushedAt":"2024-08-15T01:31:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: bwa-mem2 bug with tmp","shortMessageHtmlLink":"fix: bwa-mem2 bug with tmp"}},{"before":"117b52c2be85be29ce3b0ec731058584a0836a39","after":"6fc2bba74b62bcf21e741d648ad268cc1bda512e","ref":"refs/heads/gridss","pushedAt":"2024-08-14T16:25:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: sv files require bwamem not bwamem2 index","shortMessageHtmlLink":"fix: sv files require bwamem not bwamem2 index"}},{"before":"df0fcc3dbb5736e3f812a29f3c65e32b35a5be10","after":"117b52c2be85be29ce3b0ec731058584a0836a39","ref":"refs/heads/gridss","pushedAt":"2024-08-14T16:24:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: change docker for logan base for bcftools","shortMessageHtmlLink":"fix: change docker for logan base for bcftools"}},{"before":"b86a24d1b13c6ede1b6a2327b17a0a3a29e3540c","after":"df0fcc3dbb5736e3f812a29f3c65e32b35a5be10","ref":"refs/heads/gridss","pushedAt":"2024-08-14T16:24:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: change gres higher for bwa","shortMessageHtmlLink":"fix: change gres higher for bwa"}},{"before":"4cc76bd7ac051e34f46048bfdbc5d0dc98232d8e","after":"b86a24d1b13c6ede1b6a2327b17a0a3a29e3540c","ref":"refs/heads/gridss","pushedAt":"2024-08-14T16:23:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: increase mem for bwam","shortMessageHtmlLink":"fix: increase mem for bwam"}},{"before":"da0b15c10e3fe2d364f1ef597aec1313e658cfd0","after":"4cc76bd7ac051e34f46048bfdbc5d0dc98232d8e","ref":"refs/heads/gridss","pushedAt":"2024-08-13T13:03:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"refactor: add use bam.bai vs .bai","shortMessageHtmlLink":"refactor: add use bam.bai vs .bai"}},{"before":"72605cd8d145da9f257ab6f12ced2ed2074694f8","after":"da0b15c10e3fe2d364f1ef597aec1313e658cfd0","ref":"refs/heads/gridss","pushedAt":"2024-08-13T13:02:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"feat: mosdepth add","shortMessageHtmlLink":"feat: mosdepth add"}},{"before":"5fa7d2c429fa5ffc25fd3d6fe006d89ccda1d963","after":"72605cd8d145da9f257ab6f12ced2ed2074694f8","ref":"refs/heads/gridss","pushedAt":"2024-08-13T12:50:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: move module to process","shortMessageHtmlLink":"fix: move module to process"}},{"before":"a143d065e88f4d0863e65a76e81c834bed83fa5c","after":"5fa7d2c429fa5ffc25fd3d6fe006d89ccda1d963","ref":"refs/heads/gridss","pushedAt":"2024-08-13T12:50:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: script path","shortMessageHtmlLink":"fix: script path"}},{"before":"7a3a60728e77a1de64a4533e3b8e2399f0f108cd","after":"a143d065e88f4d0863e65a76e81c834bed83fa5c","ref":"refs/heads/gridss","pushedAt":"2024-08-12T14:57:47.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: remove paths to ccbrlegacy","shortMessageHtmlLink":"fix: remove paths to ccbrlegacy"}},{"before":"03031cad5238b9118e3f5ffe4dbfd7aa58790be8","after":"7a3a60728e77a1de64a4533e3b8e2399f0f108cd","ref":"refs/heads/gridss","pushedAt":"2024-08-08T14:26:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: remove sage","shortMessageHtmlLink":"fix: remove sage"}},{"before":"d39fa11e5356e8990d9926645a0150c3fcc1c3e8","after":"03031cad5238b9118e3f5ffe4dbfd7aa58790be8","ref":"refs/heads/gridss","pushedAt":"2024-08-07T02:07:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: match string for hg38 references","shortMessageHtmlLink":"fix: match string for hg38 references"}},{"before":"5ad644f64ee2b895e82d118d4797e7c289971437","after":"d39fa11e5356e8990d9926645a0150c3fcc1c3e8","ref":"refs/heads/gridss","pushedAt":"2024-08-07T02:05:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: changes to bind paths","shortMessageHtmlLink":"fix: changes to bind paths"}},{"before":null,"after":"5ad644f64ee2b895e82d118d4797e7c289971437","ref":"refs/heads/gridss","pushedAt":"2024-08-07T02:05:40.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"},"commit":{"message":"fix: correct paths of hg19","shortMessageHtmlLink":"fix: correct paths of hg19"}},{"before":"73f86023df396a1d958da05f9a27cec24bc9a395","after":null,"ref":"refs/heads/fix_convertStrelka","pushedAt":"2024-07-22T14:07:33.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dnousome","name":"Darryl Nousome","path":"/dnousome","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10719976?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xM1QxOTo0NzoyNS4wMDAwMDBazwAAAAS11hqE","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xM1QxOTo0NzoyNS4wMDAwMDBazwAAAAS11hqE","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNy0yMlQxNDowNzozMy4wMDAwMDBazwAAAASF2lu3"}},"title":"Activity ยท CCBR/LOGAN"}