Updated HPO link and opened metrics

[2.1]

Modified

• Open up metrics endpoint for any request (no token needed)

Fixed

• Update HPO file name to reflect resource on compbio.charite.de/jenkins

Gene IDs as Ensembl IDs

Modified

• Ensembl gene IDs to describe gene IDs
• Allow matching when external patients have entrez gene IDs or HGNC symbols
• Display contact email in notification emails
• Save to database only matches with results or error messages

Fix missing patient id in results

[1.3] - 2019-10-31

Fixes

• Handle better external matching errors
• Fix a bug introduced in version 1.2.0 (missing patient id in results)

Remove Host from external request headers

Avoid compatibility issues

Introduced patient score threshold for filtering match results

[1.2.0] - 2019-10-29

Added

• Introduced SCORE_THRESHOLD parameter as a minimum patient score threshold for returned results

Modified

• Command line returns app version

Fixed bug in phenotype matching

[1.1.1] - 2019-04-25

Modified

• Fixed bug in phenotype matching when no OMIM or no HPO terms are available

Patient similarity against all patients in database

[1.1.0] - 2019-04-25

Modified

• patient-similarity against all patients in database if query patient has HPO term

patient-similarity integration

[1.0.0] - 2019-04-18

Added

• patient-similarity integration for phenotype scoring