From 9203020adb4608e72198fc6a7dd81c9fd2faee05 Mon Sep 17 00:00:00 2001 From: xiangyuzhi Date: Fri, 15 Sep 2023 10:09:37 +0800 Subject: [PATCH] [Sparse] Add relabel python API (#6323) --- python/dgl/sparse/sparse_matrix.py | 76 ++++++++++++++++++++++++++++++ 1 file changed, 76 insertions(+) diff --git a/python/dgl/sparse/sparse_matrix.py b/python/dgl/sparse/sparse_matrix.py index cfdbd4d84eb2..cb85e1435ffa 100644 --- a/python/dgl/sparse/sparse_matrix.py +++ b/python/dgl/sparse/sparse_matrix.py @@ -680,6 +680,82 @@ def sample( self.c_sparse_matrix.sample(dim, fanout, ids, replace, bias) ) + def compact( + self, + dim: int, + leading_indices: Optional[torch.Tensor] = None, + ): + """Compact sparse matrix by removing rows or columns without non-zero + elements in the sparse matrix and relabeling indices of the dimension. + + This function serves a dual purpose: it allows you to reorganize the + indices within a specific dimension (rows or columns) of the sparse + matrix and, if needed, place certain 'leading_indices' at the beginning + of the relabeled dimension. + + In the absence of 'leading_indices' (when it's set to `None`), the order + of relabeled indices remains the same as the original order, except that + rows or columns without non-zero elements are removed. When + 'leading_indices' are provided, they are positioned at the start of the + relabeled dimension. To be precise, all rows selected by the specified + indices will be remapped from 0 to length(indices) - 1. Rows that are not + selected and contain any non-zero elements will be positioned after those + remapped rows while maintaining their original order. + + This function mimics 'dgl.to_block', a method used to compress a sampled + subgraph by eliminating redundant nodes. The 'leading_indices' parameter + replicates the behavior of 'include_dst_in_src' in 'dgl.to_block', + adding destination node information for message passing. + Setting 'leading_indices' to column IDs when relabeling the row + dimension, for example, achieves the same effect as including destination + nodes in source nodes. + + Parameters + ---------- + dim : int + The dimension to relabel. Should be 0 or 1. Use `dim = 0` for rowwise + relabeling and `dim = 1` for columnwise relabeling. + leading_indices : torch.Tensor, optional + An optional tensor containing row or column ids that should be placed + at the beginning of the relabeled dimension. + + Returns + ------- + Tuple[SparseMatrix, torch.Tensor] + A tuple containing the relabeled sparse matrix and the index mapping + of the relabeled dimension from the new index to the original index. + + Examples + -------- + >>> indices = torch.tensor([[0, 2], + [1, 2]]) + >>> A = dglsp.spmatrix(indices) + >>> print(A.to_dense()) + tensor([[0., 1., 0.], + [0., 0., 0.], + [0., 0., 1.]]) + + Case 1: Compact rows without indices. + + >>> B, original_rows = A.compact(dim=0, leading_indices=None) + >>> print(B.to_dense()) + tensor([[0., 1., 0.], + [0., 0., 1.]]) + >>> print(original_rows) + torch.Tensor([0, 2]) + + Case 2: Compact rows with indices. + + >>> B, original_rows = A.compact(dim=0, leading_indices=[1, 2]) + >>> print(B.to_dense()) + tensor([[0., 0., 0.], + [0., 0., 1.], + [0., 1., 0.],]) + >>> print(original_rows) + torch.Tensor([1, 2, 0]) + """ + raise NotImplementedError + def spmatrix( indices: torch.Tensor,