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ccpp.yml
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name: DOLFINx CI
on:
push:
branches:
- "**"
tags:
- "v*"
pull_request:
branches:
- main
merge_group:
branches:
- main
workflow_dispatch:
inputs:
ffcx_ref:
description: "FFCx branch or tag"
default: "main"
type: string
basix_ref:
description: "Basix branch or tag"
default: "main"
type: string
ufl_ref:
description: "UFL branch or tag"
default: "main"
type: string
jobs:
build:
if: "!(contains(github.event.head_commit.message, '[ci skip]') || contains(github.event.head_commit.message, '[skip ci]'))"
runs-on: ubuntu-20.04
container: ghcr.io/fenics/test-env:current-openmpi
env:
PETSC_ARCH: ${{ matrix.petsc_arch }}
OMPI_ALLOW_RUN_AS_ROOT: 1
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
OMPI_MCA_rmaps_base_oversubscribe: 1
OMPI_MCA_plm: isolated
OMPI_MCA_btl_vader_single_copy_mechanism: none
OMPI_MCA_mpi_yield_when_idle: 1
OMPI_MCA_hwloc_base_binding_policy: none
strategy:
matrix:
petsc_arch: [linux-gnu-real32-32, linux-gnu-real64-32, linux-gnu-complex64-32, linux-gnu-complex128-32, linux-gnu-real64-64, linux-gnu-complex128-64]
name: Build and test (${{ matrix.petsc_arch }})
steps:
- uses: actions/checkout@v3
- name: Install FEniCS Python components (default branches/tags)
if: github.event_name != 'workflow_dispatch'
run: |
python3 -m pip install git+https://github.com/FEniCS/ufl.git
python3 -m pip install git+https://github.com/FEniCS/basix.git
python3 -m pip install git+https://github.com/FEniCS/ffcx.git
- name: Install FEniCS Python components
if: github.event_name == 'workflow_dispatch'
run: |
python3 -m pip install git+https://github.com/FEniCS/ufl.git@${{ github.event.inputs.ufl_ref }}
python3 -m pip install git+https://github.com/FEniCS/basix.git@${{ github.event.inputs.basix_ref }}
python3 -m pip install git+https://github.com/FEniCS/ffcx.git@${{ github.event.inputs.ffcx_ref }}
- name: Install matplotlib
run: pip3 install matplotlib
- name: Flake8 checks
run: |
cd python/
python3 -m flake8 dolfinx
python3 -m flake8 demo
python3 -m flake8 test
- name: isort checks (non-blocking)
continue-on-error: true
run: |
cd python/
python3 -m isort --check .
- name: mypy checks
run: |
python3 -m pip install types-setuptools
cd python/
mypy dolfinx
mypy demo
mypy test
- name: clang-format C++ checks (non-blocking)
continue-on-error: true
run: |
cd cpp
clang-format --version
find . -type f \( -name "*.cpp" -o -name "*.h" \) ! -name "loguru.cpp" | xargs clang-format --dry-run --Werror
- name: clang-format Python binding checks (non-blocking)
continue-on-error: true
run: |
cd python/dolfinx/wrappers
clang-format --version
find . -type f \( -name "*.cpp" -o -name "*.h" \) | xargs clang-format --dry-run --Werror
- name: cmake-format (non-blocking)
continue-on-error: true
run: |
find . -type f \( -name "*.cmake" -o -name "*.cmake.in" \) | xargs cmake-format --check
- name: Configure C++
run: cmake -G Ninja -DCMAKE_BUILD_TYPE=Developer -B build -S cpp/
- name: Build and install C++ library
run: |
cmake --build build
cmake --install build
- name: Build C++ interface documentation
run: |
python3 -m pip install breathe
export DOLFINX_VERSION=`cmake -L build | grep DOXYGEN_DOLFINX_VERSION | cut -f2 -d "="`
echo $DOLFINX_VERSION
cd cpp/doc
doxygen Doxyfile
make html
- name: Build C++ unit tests
run: |
cmake -G Ninja -DCMAKE_BUILD_TYPE=Developer -B build/test/ -S build/test/
cmake --build build/test
- name: Run C++ unit tests (serial)
run: |
cd build/test
ctest -V --output-on-failure -R unittests
- name: Run C++ unit tests (MPI)
run: |
cd build/test
mpiexec -np 2 ctest -V --output-on-failure -R unittests
- name: Build and run C++ regression tests (serial and MPI (np=2))
run: |
cmake -G Ninja -DCMAKE_BUILD_TYPE=Developer -B build/demo/ -S build/demo/
cmake --build build/demo
cd build/demo
ctest -V -R demo -R serial
ctest -V -R demo -R mpi_2
- name: Build Python interface
run: CMAKE_BUILD_TYPE=Debug python3 -m pip -v install python/
- name: Build Python interface documentation
run: |
python3 -m pip install sphinx==5.0.2
cd python/doc
make html
- name: Set default DOLFINx JIT options
run: |
mkdir -p ~/.config/dolfinx
echo '{ "cffi_extra_compile_args": ["-g0", "-O0" ] }' > ~/.config/dolfinx/dolfinx_jit_options.json
- name: Run demos (Python, serial)
run: python3 -m pytest -n=2 -m serial --durations=10 python/demo/test.py
- name: Run demos (Python, MPI (np=2))
run: python3 -m pytest -m mpi --num-proc=2 python/demo/test.py
- name: Run Python unit tests (serial)
run: python3 -m pytest -n=auto --durations=50 python/test/unit/
- name: Run Python unit tests (MPI, np=2)
run: mpirun -np 2 python3 -m pytest python/test/unit/
- name: Upload C++ documentation artifact
uses: actions/upload-artifact@v3
with:
name: doc-cpp-${{ matrix.petsc_arch }}
path: |
cpp/doc/html/
cpp/doc/build/
retention-days: 2
if-no-files-found: error
- name: Upload Python documentation artifact
uses: actions/upload-artifact@v3
with:
name: doc-python-${{ matrix.petsc_arch }}
path: |
python/doc/build/html/
retention-days: 2
if-no-files-found: error
- name: Checkout FEniCS/docs
if: ${{ github.repository == 'FEniCS/dolfinx' && ( github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v') ) && runner.os == 'Linux' }}
uses: actions/checkout@v3
with:
repository: "FEniCS/docs"
path: "docs"
ssh-key: "${{ secrets.SSH_GITHUB_DOCS_PRIVATE_KEY }}"
- name: Set version name
if: ${{ github.repository == 'FEniCS/dolfinx' && ( github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v') ) && runner.os == 'Linux' }}
run: |
echo "VERSION_NAME=${GITHUB_REF#refs/*/}" >> $GITHUB_ENV
- name: Copy documentation into repository
if: ${{ github.repository == 'FEniCS/dolfinx' && ( github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v') ) && runner.os == 'Linux' }}
run: |
cd docs
git rm -r --ignore-unmatch dolfinx/${{ env.VERSION_NAME }}/cpp
git rm -r --ignore-unmatch dolfinx/${{ env.VERSION_NAME }}/python
mkdir -p dolfinx/${{ env.VERSION_NAME }}/cpp
mkdir -p dolfinx/${{ env.VERSION_NAME }}/cpp/doxygen
mkdir -p dolfinx/${{ env.VERSION_NAME }}/python
cp -r ../cpp/doc/build/html/* dolfinx/${{ env.VERSION_NAME }}/cpp/
cp -r ../cpp/doc/html/* dolfinx/${{ env.VERSION_NAME }}/cpp/doxygen
cp -r ../python/doc/build/html/* dolfinx/${{ env.VERSION_NAME }}/python
- name: Commit and push documentation to FEniCS/docs
if: ${{ github.repository == 'FEniCS/dolfinx' && ( github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v') ) && runner.os == 'Linux' && matrix.petsc_arch == 'linux-gnu-real64-32' }}
run: |
cd docs
git config --global user.email "fenics@github.com"
git config --global user.name "FEniCS GitHub Actions"
git add --all
git commit --allow-empty -m "C++ FEniCS/dolfinx@${{ github.sha }}"
git push