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Add contour lines for a set of qvalues in the plot #100

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tdelhomme opened this issue Apr 8, 2016 · 1 comment
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Add contour lines for a set of qvalues in the plot #100

tdelhomme opened this issue Apr 8, 2016 · 1 comment
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@tdelhomme
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The idea is to compute, at each position, for a grid (DP,AO) of n points, the corresponding qvalues if we add the point in the observations.
For each point of the grid, its qvalue will correspond to a transformed p-value computed with pnbinom using estimated parameters of the regression including the point.
This will allow us to plot contour lines for a set of qvalues.
From this, we could also compute, for a specific q-value threshold, the distribution of min_af (=AO/DP in the contour line of the threshold) in function of DP.

@tdelhomme
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This would let the user know what would be the minimum allelic fraction detectable with his threshold.

@tdelhomme tdelhomme added this to the v1.0 milestone Apr 8, 2016
@tdelhomme tdelhomme self-assigned this Apr 8, 2016
tdelhomme referenced this issue Apr 20, 2016
Add contour lines on plots, correct titles of plots and modifiy the zoom by considering a scale depending on the max qvalue (default=100) of the contour lines (previously computed on 2*confidence interval of 0.01).
@mfoll mfoll modified the milestones: v0.3, v1.0 Apr 29, 2016
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