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Using renamed symlinks as input BAM files doesn't work with --use_file_name option #152

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mfoll opened this issue Feb 23, 2017 · 1 comment
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Using renamed symlinks as input BAM files doesn't work with --use_file_name option #152

mfoll opened this issue Feb 23, 2017 · 1 comment
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mfoll commented Feb 23, 2017

This is a nextflow bug introduced after v0.22.1, see nextflow-io/nextflow#292. In the meantime a workaround it to use an older version of nextflow:

export NXF_VER=0.22.0
@mfoll mfoll added this to the v1.1 milestone Feb 23, 2017
@mfoll mfoll self-assigned this Feb 23, 2017
@mfoll mfoll changed the title Using renamed symlinks as input BAM files doesn't work with --use_file_name option Using renamed symlinks as input BAM files doesn't work with --use_file_name option Feb 23, 2017
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mfoll commented Mar 15, 2017

Now solved with nextflow version 0.23.4, see nextflow-io/nextflow#292.

@mfoll mfoll closed this as completed Mar 15, 2017
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