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Check that BAM folder contains bam files #66

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mfoll opened this issue Oct 16, 2015 · 1 comment
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Check that BAM folder contains bam files #66

mfoll opened this issue Oct 16, 2015 · 1 comment
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@tdelhomme
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minor bug
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v0.3

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@mfoll
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mfoll commented Oct 16, 2015

Send an error if not (check bai too) and a warning if less than 20? (refuse to run with less than 10?)
@mfoll mfoll added this to the v0.3 milestone Oct 16, 2015
tdelhomme referenced this issue Nov 18, 2015
@tdelhomme
test presence and number of bam files
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still remains to check if every .bam has a mate .bai (build 2 lists corresponding to bam names and bai names and then check the equality)

@tdelhomme tdelhomme mentioned this issue Nov 23, 2015
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tdelhomme referenced this issue Nov 23, 2015
@tdelhomme
check every bam file has an index
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This was referenced Nov 23, 2015
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