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platypus_dag.html
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platypus_dag.html
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<!--
~ Copyright 2013-2019, Centre for Genomic Regulation (CRG)
~
~ Licensed under the Apache License, Version 2.0 (the "License");
~ you may not use this file except in compliance with the License.
~ You may obtain a copy of the License at
~
~ http://www.apache.org/licenses/LICENSE-2.0
~
~ Unless required by applicable law or agreed to in writing, software
~ distributed under the License is distributed on an "AS IS" BASIS,
~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
~ See the License for the specific language governing permissions and
~ limitations under the License.
-->
<html>
<head>
<title>Nextflow Cytoscape.js with Dagre</title>
<meta name="viewport" content="width=device-width, user-scalable=no, initial-scale=1, maximum-scale=1">
<script type="text/javascript">
var prot = (("https:" == document.location.protocol) ? "https://" : "http://");
document.write(unescape("%3Cscript src='" + prot + "code.jquery.com/jquery-2.0.3.min.js' type='text/javascript' %3E%3C/script%3E"));
document.write(unescape("%3Cscript src='" + prot + "cdnjs.cloudflare.com/ajax/libs/cytoscape/2.6.12/cytoscape.min.js' type='text/javascript' %3E%3C/script%3E"));
document.write(unescape("%3Cscript src='" + prot + "cdn.rawgit.com/cpettitt/dagre/v0.7.4/dist/dagre.min.js' type='text/javascript' %3E%3C/script%3E"));
document.write(unescape("%3Cscript src='" + prot + "cdn.rawgit.com/cytoscape/cytoscape.js-dagre/1.1.2/cytoscape-dagre.js' type='text/javascript' %3E%3C/script%3E"));
</script>
<style>
body {
font-family: helvetica;
font-size: 14px;
}
#cy {
width: 100%;
height: 100%;
position: absolute;
left: 0;
top: 0;
z-index: 999;
}
h1 {
opacity: 0.5;
font-size: 1em;
}
</style>
<script>
$(function(){
var cy = window.cy = cytoscape({
container: document.getElementById('cy'),
boxSelectionEnabled: false,
autounselectify: true,
layout: {
name: 'dagre'
},
style: cytoscape.stylesheet()
.selector( 'node')
.css({
'width': 10,
'height': 10,
'content': 'data(label)',
'text-valign': 'center',
'text-halign': 'center',
'text-opacity': 0.5,
})
.selector('node.PROCESS')
.css({
'width': 100,
'height': 50,
'text-opacity': 0.9,
'background-color': '#009911'
})
.selector('node.OPERATOR')
.css({
'background-color': '#11479e',
'text-halign': 'right',
})
.selector('node.ORIGIN')
.css({
'background-color': '#999999',
'text-halign': 'right',
})
.selector('node.TERMINATION')
.css({
'background-color': '#999999',
'text-halign': 'right',
})
.selector('edge')
.css({
'content': 'data(label)',
'text-opacity': 0.5,
'width': 4,
'target-arrow-shape': 'triangle',
'line-color': '#9dbaea',
'target-arrow-color': '#9dbaea'
}),
elements: {
nodes: [
{ data: { id: 'p0', label: 'Channel.fromPath'}, classes: 'ORIGIN' },
{ data: { id: 'p1', label: 'ifEmpty'}, classes: 'OPERATOR' },
{ data: { id: 'p2', label: 'map'}, classes: 'OPERATOR' },
{ data: { id: 'p3', label: 'Channel.fromPath'}, classes: 'ORIGIN' },
{ data: { id: 'p4', label: 'ifEmpty'}, classes: 'OPERATOR' },
{ data: { id: 'p5', label: 'map'}, classes: 'OPERATOR' },
{ data: { id: 'p6', label: 'phase'}, classes: 'OPERATOR' },
{ data: { id: 'p7', label: 'map'}, classes: 'OPERATOR' },
{ data: { id: 'p8'}, classes: 'ORIGIN' },
{ data: { id: 'p9'}, classes: 'ORIGIN' },
{ data: { id: 'p10'}, classes: 'ORIGIN' },
{ data: { id: 'p11', label: 'platypus'}, classes: 'PROCESS' },
{ data: { id: 'p12', label: 'filter_on_pass'}, classes: 'PROCESS' },
{ data: { id: 'p13'}, classes: 'ORIGIN' },
{ data: { id: 'p14'}, classes: 'ORIGIN' },
{ data: { id: 'p15', label: 'bgziptabix'}, classes: 'PROCESS' },
{ data: { id: 'p16'}, classes: 'NODE' },
],
edges: [
{ data: { source: 'p0', target: 'p1'} },
{ data: { source: 'p1', target: 'p2'} },
{ data: { source: 'p2', target: 'p6', label: 'bams' } },
{ data: { source: 'p3', target: 'p4'} },
{ data: { source: 'p4', target: 'p5'} },
{ data: { source: 'p5', target: 'p6', label: 'bais' } },
{ data: { source: 'p6', target: 'p7'} },
{ data: { source: 'p7', target: 'p11', label: 'bam_bai' } },
{ data: { source: 'p8', target: 'p11', label: 'ref' } },
{ data: { source: 'p9', target: 'p11', label: 'ref_fai' } },
{ data: { source: 'p10', target: 'p11', label: 'region' } },
{ data: { source: 'p11', target: 'p12', label: 'platypus_vcf_to_filter' } },
{ data: { source: 'p12', target: 'p15', label: 'platypus_vcf' } },
{ data: { source: 'p13', target: 'p15', label: 'ref' } },
{ data: { source: 'p14', target: 'p15', label: 'ref_fai' } },
{ data: { source: 'p15', target: 'p16', label: 'compressed_VCF' } },
],
},
});
});
</script>
</head>
<body>
<h1>Nextflow Cytoscape.js with Dagre</h1>
<div id="cy"></div>
</body>
</html>