Mixed effects for all
- added vertex and anatLmer variants along with degrees of freedom
  estimation and FDR correction
Major parallelism updates
- offload configuration to BatchJobs, see ?configureMincParallel
- provide graceful exit and cleanup if interrupted
Parallelize all the things (for local and queued systems)
- mincLm (+ minor performance improvement)
- vertexLmer
- vertexApply
- anatLmer
- anatGetAll
Explanation of parallel use and implementation in
RMINC/documentation/RMINC_parallelism.html
vertexApply behaves more like apply, no longer requires a quoted function string
accepting a function name and an arbitrary number of additional arguments
MincLmer returns the full volume matrix as opposed to the masked subset
Peak finding: Find local optima in a minc volume subject to constraints
anatGetAll rewrite:
- 10-15x faster for method = "labels" (and parallelizable)
- More informative errors
- no minc-stuffs dependency
- atlas name no longer required for method = "labels"
- pretty printing
File and vector masks for vertex operations (apply, lmer)
Simple single volume and matrix TFCE interfaces, randomization tests
complete but inadequately tested
Mesh->Graph conversion (via igraph) opens surface oriented graph algorithms
thresholds method for FDR (mincQValues) objects to retrieve matrix of thresholds
and a summary to tabulate N significant tests per threshold
maskFile(obj) and maskFile(obj) <- "mask.mnc" methods for getting/setting masks
likeVolume(obj) and likeVolume(obj) <- "vol.mnc" methods for getting/setting likeVolumes
simple civet QC reader civet.readQC
Surface transparency for surface renderings with add_opacity
Decrease mincGetVolume verbosity
File handle problem detection with many files.

Assets 3

05 May 14:21

cfhammill

v1.4.2.0

88f1836

Ulam

New in Version 1.4.2.0

Aiming for CRAN

Major CRAN compatibility changes
Revamped build scripts
Improved mincApply (mincApplyRCPP)
New parallelism abstractions (pMincApply, qMincApply, mcMincApply)
New grid computing backend (BatchJobs package)
Full conversion to Roxygen documentation
Code Re-organization
Bug-fix in mincPlotSliceSeries colour scaling
Bug-fix in mincApplyRCPP

Assets 2

25 Feb 15:27

mcvaneede

v1.3.0.0

3f631d2

Bayes

Some major updates in terms of visualization of your data from within R. This is the entire entry in the NEWS section on 1.3.0.0 (The html tutorial pages currently don't show from the GitHub pages. You will have to actually download the files):

_RMINC now with more Graphics_

mincArray - give your minc volume objects dimensionsality
mincImage - view a slice through a minc array
mincPlotAnatAndStatsSlice - view a slice with a statistic overlay
mincPlotSliceSeries - a convenient way to view a volume, potentially with
statistic overlays
launch_shinyRMINC - a handy app for interactively exploring anatomy and statistics

3D tools (Warning, API will likely change)

read_obj - a reader for BIC-MNI obj files
plot.bic_obj - create an interactive rgl rendering of an obj, potentially
with a statistic overlay with plot(bic_obj)
obj_montage - create a figure with multiple views of two obj files with overlays
selectVertex - interactive pick vertices from an obj rendering
vertexLookup - find vertices from within a set, or look-up statistic values for
known vertices

Tutorials