diff --git a/DESCRIPTION b/DESCRIPTION index 7409a49c..e657540b 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: tlf Type: Package Title: TLF Library -Version: 0.1.0 +Version: 1.1.0 Authors@R: c(person(given = "Open-Systems-Pharmacology Community", role = "cph"), @@ -29,7 +29,7 @@ Imports: Depends: R (>= 3.5) Encoding: UTF-8 -RoxygenNote: 7.0.2 +RoxygenNote: 7.1.1 Roxygen: list(markdown = TRUE) LazyData: true Suggests: diff --git a/NAMESPACE b/NAMESPACE index e43f033f..24c96724 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -1,4 +1,4 @@ -# Generated by roxygen2: do not edit by hand +# Generated by roxygen2: do not edit by hand export("Percentile0%") export("Percentile1%") diff --git a/appveyor.yml b/appveyor.yml index 50319ff8..d1f49e6e 100644 --- a/appveyor.yml +++ b/appveyor.yml @@ -12,7 +12,7 @@ install: - git submodule update --init --recursive environment: - app_version: "1.0" + app_version: "1.1" USE_RTOOLS: true R_ARCH: x64 KEEP_VIGNETTES: true diff --git a/man/AggregationInput.Rd b/man/AggregationInput.Rd index 44695399..98322832 100644 --- a/man/AggregationInput.Rd +++ b/man/AggregationInput.Rd @@ -29,6 +29,7 @@ that will be used as variable name of the aggregation} } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{AggregationInput} object \subsection{Usage}{ @@ -60,6 +61,7 @@ A new \code{AggregationInput} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/AggregationSummary.Rd b/man/AggregationSummary.Rd index c07c4101..5a2e939d 100644 --- a/man/AggregationSummary.Rd +++ b/man/AggregationSummary.Rd @@ -51,6 +51,7 @@ The summary statistic column name in each data.frame is the same as the name of } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{AggregationSummary} object \subsection{Usage}{ @@ -99,6 +100,7 @@ A new \code{AggregationSummary} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-applyAggregationFunctions}{}}} \subsection{Method \code{applyAggregationFunctions()}}{ Apply aggregation functions on \code{x} \subsection{Usage}{ @@ -118,6 +120,7 @@ A list or vector of aggregated values } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-generateAggregatedValues}{}}} \subsection{Method \code{generateAggregatedValues()}}{ Generate aggregated values \subsection{Usage}{ @@ -130,6 +133,7 @@ A list or vector of aggregated values } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/AxisConfiguration.Rd b/man/AxisConfiguration.Rd index b8dc7ef4..36eda93d 100644 --- a/man/AxisConfiguration.Rd +++ b/man/AxisConfiguration.Rd @@ -29,6 +29,7 @@ R6 class defining the configuration of axis } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{AxisConfiguration} object \subsection{Usage}{ @@ -60,6 +61,7 @@ A new \code{AxisConfiguration} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-print}{}}} \subsection{Method \code{print()}}{ Print axis properties \subsection{Usage}{ @@ -72,6 +74,7 @@ Axis properties } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/BackgroundConfiguration.Rd b/man/BackgroundConfiguration.Rd index 549ea2bb..19709476 100644 --- a/man/BackgroundConfiguration.Rd +++ b/man/BackgroundConfiguration.Rd @@ -30,6 +30,7 @@ R6 class defining the configuration of background } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{BackgroundConfiguration} object \subsection{Usage}{ @@ -66,6 +67,7 @@ A new \code{BackgroundConfiguration} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-print}{}}} \subsection{Method \code{print()}}{ Print background properties \subsection{Usage}{ @@ -78,6 +80,7 @@ Background properties } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-setBackground}{}}} \subsection{Method \code{setBackground()}}{ Set background properties of a \code{ggplot} object \subsection{Usage}{ @@ -97,6 +100,7 @@ A \code{ggplot} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/BackgroundElementConfiguration.Rd b/man/BackgroundElementConfiguration.Rd index beace546..21d8aebb 100644 --- a/man/BackgroundElementConfiguration.Rd +++ b/man/BackgroundElementConfiguration.Rd @@ -29,6 +29,7 @@ R6 class defining the configuration of background elements } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{BackgroundElementConfiguration} object \subsection{Usage}{ @@ -62,6 +63,7 @@ A new \code{BackgroundElementConfiguration} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-print}{}}} \subsection{Method \code{print()}}{ Print background element properties \subsection{Usage}{ @@ -74,6 +76,7 @@ Background element properties } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/BoxWhiskerDataMapping.Rd b/man/BoxWhiskerDataMapping.Rd index cb0897a0..5d35b958 100644 --- a/man/BoxWhiskerDataMapping.Rd +++ b/man/BoxWhiskerDataMapping.Rd @@ -38,6 +38,7 @@ calculated on \code{data} to obtain box whiskers} } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{BoxWhiskerDataMapping} object \subsection{Usage}{ @@ -94,6 +95,7 @@ A new \code{BoxWhiskerDataMapping} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-getBoxWhiskerLimits}{}}} \subsection{Method \code{getBoxWhiskerLimits()}}{ Get a data.frame with box-whisker limit by group \subsection{Usage}{ @@ -113,6 +115,7 @@ A data.frame with \code{ymin}, \code{lower}, \code{middle}, \code{upper}, \code{ } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-getOutliers}{}}} \subsection{Method \code{getOutliers()}}{ Get a data.frame flagging outliers \subsection{Usage}{ @@ -133,6 +136,7 @@ Values not flagged are \code{NA} in the outliers variables } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/BoxWhiskerPlotConfiguration.Rd b/man/BoxWhiskerPlotConfiguration.Rd index d58b5e54..a7767788 100644 --- a/man/BoxWhiskerPlotConfiguration.Rd +++ b/man/BoxWhiskerPlotConfiguration.Rd @@ -27,6 +27,7 @@ R6 class defining the configuration of a \code{ggplot} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{BoxWhiskerPlotConfiguration} object \subsection{Usage}{ @@ -46,6 +47,7 @@ A new \code{BoxWhiskerPlotConfiguration} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-addBoxWhisker}{}}} \subsection{Method \code{addBoxWhisker()}}{ Add a boxplot layer to a \code{ggplot} object \subsection{Usage}{ @@ -76,6 +78,7 @@ A \code{ggplot} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-addOutliers}{}}} \subsection{Method \code{addOutliers()}}{ Add a outlier points layer to a \code{ggplot} object \subsection{Usage}{ @@ -106,6 +109,7 @@ A \code{ggplot} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/DDIRatioDataMapping.Rd b/man/DDIRatioDataMapping.Rd index ae7527b6..d84cb02d 100644 --- a/man/DDIRatioDataMapping.Rd +++ b/man/DDIRatioDataMapping.Rd @@ -38,6 +38,7 @@ R6 class for mapping \code{x}, \code{y}, \code{GroupMapping} and \code{ddiRatioL } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{DDIRatioDataMapping} object \subsection{Usage}{ @@ -65,6 +66,7 @@ A new \code{DDIRatioDataMapping} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-getDDIRatioLines}{}}} \subsection{Method \code{getDDIRatioLines()}}{ Create a data.frame with DDI ratio limits This data.frame is necessary in case if log-log plots as @@ -79,6 +81,7 @@ A data.frame with DDI ratio limits } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-getGuestLines}{}}} \subsection{Method \code{getGuestLines()}}{ Get a data.frame with Guest et al ratio limits \subsection{Usage}{ @@ -91,6 +94,7 @@ A data.frame with Guest et al ratio limits } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/DDIRatioPlotConfiguration.Rd b/man/DDIRatioPlotConfiguration.Rd index 9dcd3e8e..fb59b27b 100644 --- a/man/DDIRatioPlotConfiguration.Rd +++ b/man/DDIRatioPlotConfiguration.Rd @@ -32,6 +32,7 @@ R6 class defining the configuration of a \code{ggplot} object for DDI Ratio plot } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{DDIRatioPlotConfiguration} object \subsection{Usage}{ @@ -56,6 +57,7 @@ A new \code{DDIRatioPlotConfiguration} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/ExportConfiguration.Rd b/man/ExportConfiguration.Rd index 6cb10c7b..82035301 100644 --- a/man/ExportConfiguration.Rd +++ b/man/ExportConfiguration.Rd @@ -29,6 +29,7 @@ R6 class defining the save configuration of a \code{ggplot} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{ExportConfiguration} object \subsection{Usage}{ @@ -59,6 +60,7 @@ A new \code{ExportConfiguration} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-print}{}}} \subsection{Method \code{print()}}{ Print file export properties \subsection{Usage}{ @@ -71,6 +73,7 @@ File export properties } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/Font.Rd b/man/Font.Rd index 6027924f..f6b9e9de 100644 --- a/man/Font.Rd +++ b/man/Font.Rd @@ -30,6 +30,7 @@ R6 class defining \code{size}, \code{color}, \code{fontFamily}, \code{fontFace} } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{Font} object. Default font properties are defined directly in the object field, @@ -57,6 +58,7 @@ A new \code{Font} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-print}{}}} \subsection{Method \code{print()}}{ Print \code{Font} properties. \subsection{Usage}{ @@ -66,6 +68,7 @@ Print \code{Font} properties. } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-setFont}{}}} \subsection{Method \code{setFont()}}{ Create an \code{element_text} for ggplot with \code{Font} properties. \subsection{Usage}{ @@ -78,6 +81,7 @@ An \code{element_text} for ggplot with \code{Font} properties. } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/GroupMapping.Rd b/man/GroupMapping.Rd index dc77af41..42bc3de1 100644 --- a/man/GroupMapping.Rd +++ b/man/GroupMapping.Rd @@ -30,6 +30,7 @@ R6 class for mapping \code{Grouping} variables to \code{data} } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{GroupMapping} object \subsection{Usage}{ @@ -63,6 +64,7 @@ A new \code{GroupMapping} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/Grouping.Rd b/man/Grouping.Rd index 6eaa3d07..180235e2 100644 --- a/man/Grouping.Rd +++ b/man/Grouping.Rd @@ -25,6 +25,7 @@ R6 class for mapping a \code{group} of variable(s) and their \code{label} to \co } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{Grouping} object \subsection{Usage}{ @@ -46,6 +47,7 @@ A new \code{Grouping} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-getCaptions}{}}} \subsection{Method \code{getCaptions()}}{ Get the caption associated to each \code{group} \subsection{Usage}{ @@ -67,6 +69,7 @@ A vector of characters containing the captions associated to each \code{group} o } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/HistogramDataMapping.Rd b/man/HistogramDataMapping.Rd index f94add46..29f22fbf 100644 --- a/man/HistogramDataMapping.Rd +++ b/man/HistogramDataMapping.Rd @@ -39,6 +39,7 @@ to obtain vertical lines on the histogram} } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{HistogramDataMapping} object \subsection{Usage}{ @@ -71,6 +72,7 @@ A new \code{HistogramDataMapping} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/HistogramPlotConfiguration.Rd b/man/HistogramPlotConfiguration.Rd index a0d5754b..9f8c6406 100644 --- a/man/HistogramPlotConfiguration.Rd +++ b/man/HistogramPlotConfiguration.Rd @@ -38,6 +38,7 @@ R6 class defining the configuration of a \code{ggplot} object for histograms } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{TimeProfilePlotConfiguration} object \subsection{Usage}{ @@ -61,6 +62,7 @@ A new \code{TimeProfilePlotConfiguration} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-addHistograms}{}}} \subsection{Method \code{addHistograms()}}{ Add histogram as histogram layer to a \code{ggplot} object \subsection{Usage}{ @@ -97,6 +99,7 @@ A \code{ggplot} object with histogram } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-addVerticalLines}{}}} \subsection{Method \code{addVerticalLines()}}{ Add statistics as line layer to a \code{ggplot} object \subsection{Usage}{ @@ -127,6 +130,7 @@ A \code{ggplot} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/Label.Rd b/man/Label.Rd index 39f74b9a..2f607414 100644 --- a/man/Label.Rd +++ b/man/Label.Rd @@ -26,6 +26,7 @@ R6 class defining \code{text} and \code{font} of label } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{Label} object. \subsection{Usage}{ @@ -62,6 +63,7 @@ A new \code{Label} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-print}{}}} \subsection{Method \code{print()}}{ Print \code{Label} properties. \subsection{Usage}{ @@ -71,6 +73,7 @@ Print \code{Label} properties. } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-setFontProperties}{}}} \subsection{Method \code{setFontProperties()}}{ Set font properties of Label \subsection{Usage}{ @@ -98,6 +101,7 @@ Set font properties of Label } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/LabelConfiguration.Rd b/man/LabelConfiguration.Rd index f46c4f56..3c59c6e7 100644 --- a/man/LabelConfiguration.Rd +++ b/man/LabelConfiguration.Rd @@ -30,6 +30,7 @@ R6 class defining the configuration of the labels of a \code{ggplot} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{LabelConfiguration} object \subsection{Usage}{ @@ -63,6 +64,7 @@ A new \code{LabelConfiguration} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-setPlotLabels}{}}} \subsection{Method \code{setPlotLabels()}}{ Set plot labels properties of a \code{ggplot} object \subsection{Usage}{ @@ -82,6 +84,7 @@ A \code{ggplot} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-print}{}}} \subsection{Method \code{print()}}{ Print plot label properties \subsection{Usage}{ @@ -94,6 +97,7 @@ Plot label properties } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/LegendConfiguration.Rd b/man/LegendConfiguration.Rd index b2120dca..5f5bc35d 100644 --- a/man/LegendConfiguration.Rd +++ b/man/LegendConfiguration.Rd @@ -27,6 +27,7 @@ R6 class defining the legend configuration of a \code{ggplot} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{LegendConfiguration} object \subsection{Usage}{ @@ -56,6 +57,7 @@ A new \code{LegendConfiguration} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-print}{}}} \subsection{Method \code{print()}}{ Print legend properties \subsection{Usage}{ @@ -68,6 +70,7 @@ Legend properties } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/LegendPositions.Rd b/man/LegendPositions.Rd index 8a4ccad4..b5e87c8f 100644 --- a/man/LegendPositions.Rd +++ b/man/LegendPositions.Rd @@ -4,7 +4,9 @@ \name{LegendPositions} \alias{LegendPositions} \title{LegendPositions} -\format{An object of class \code{list} of length 17.} +\format{ +An object of class \code{list} of length 17. +} \usage{ LegendPositions } diff --git a/man/LegendTypes.Rd b/man/LegendTypes.Rd index b7bed508..da037472 100644 --- a/man/LegendTypes.Rd +++ b/man/LegendTypes.Rd @@ -4,7 +4,9 @@ \name{LegendTypes} \alias{LegendTypes} \title{LegendTypes} -\format{An object of class \code{list} of length 5.} +\format{ +An object of class \code{list} of length 5. +} \usage{ LegendTypes } diff --git a/man/ObsVsPredDataMapping.Rd b/man/ObsVsPredDataMapping.Rd index 003e4702..377f23b7 100644 --- a/man/ObsVsPredDataMapping.Rd +++ b/man/ObsVsPredDataMapping.Rd @@ -39,6 +39,7 @@ R6 class for mapping \code{x}, \code{y}, \code{GroupMapping} and \code{obsVsPred } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{ObsVsPredDataMapping} object \subsection{Usage}{ @@ -73,6 +74,7 @@ A new \code{ObsVsPredDataMapping} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-getObsVsPredLines}{}}} \subsection{Method \code{getObsVsPredLines()}}{ Create a data.frame with of limits to plot This data.frame is necessary in case if log-log plots as @@ -94,6 +96,7 @@ A data.frame } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/ObsVsPredPlotConfiguration.Rd b/man/ObsVsPredPlotConfiguration.Rd index b423888a..bdf58cbc 100644 --- a/man/ObsVsPredPlotConfiguration.Rd +++ b/man/ObsVsPredPlotConfiguration.Rd @@ -34,6 +34,7 @@ R6 class defining the configuration of a \code{ggplot} object for Obs vs Pred pl } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{ObsVsPredPlotConfiguration} object \subsection{Usage}{ @@ -58,6 +59,7 @@ A new \code{obsVsPredProperties} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-addSmoother}{}}} \subsection{Method \code{addSmoother()}}{ Add smoother layer to a \code{ggplot} object \subsection{Usage}{ @@ -83,6 +85,7 @@ A \code{ggplot} object with smoother } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-addObsVsPred}{}}} \subsection{Method \code{addObsVsPred()}}{ Add obs vs pred as scatter layer to a \code{ggplot} object \subsection{Usage}{ @@ -113,6 +116,7 @@ A \code{ggplot} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/PKRatioDataMapping.Rd b/man/PKRatioDataMapping.Rd index 8b282d17..ccde206d 100644 --- a/man/PKRatioDataMapping.Rd +++ b/man/PKRatioDataMapping.Rd @@ -32,6 +32,7 @@ R6 class for mapping \code{x}, \code{y}, \code{GroupMapping} and \code{pkRatioLi } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{PKRatioDataMapping} object \subsection{Usage}{ @@ -53,6 +54,7 @@ A new \code{PKRatioDataMapping} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/PKRatioPlotConfiguration.Rd b/man/PKRatioPlotConfiguration.Rd index 534c3c8a..362dd457 100644 --- a/man/PKRatioPlotConfiguration.Rd +++ b/man/PKRatioPlotConfiguration.Rd @@ -32,6 +32,7 @@ R6 class defining the configuration of a \code{ggplot} object for PK ratio plots } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{PKRatioPlotConfiguration} object \subsection{Usage}{ @@ -56,6 +57,7 @@ A new \code{PKRatioPlotConfiguration} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/PlotConfiguration.Rd b/man/PlotConfiguration.Rd index b19e213c..08aa349a 100644 --- a/man/PlotConfiguration.Rd +++ b/man/PlotConfiguration.Rd @@ -35,6 +35,7 @@ R6 class defining the configuration of a \code{ggplot} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{PlotConfiguration} object \subsection{Usage}{ @@ -126,6 +127,7 @@ A new \code{PlotConfiguration} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-print}{}}} \subsection{Method \code{print()}}{ Print plot configuration \subsection{Usage}{ @@ -138,6 +140,7 @@ Plot configuration } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/RangeDataMapping.Rd b/man/RangeDataMapping.Rd index 01f150ce..d489d19c 100644 --- a/man/RangeDataMapping.Rd +++ b/man/RangeDataMapping.Rd @@ -34,6 +34,7 @@ R6 class for mapping \code{x}, \code{ymin} and \code{ymax} variable to \code{dat } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{RangeDataMapping} object \subsection{Usage}{ @@ -82,6 +83,7 @@ A new \code{RangeDataMapping} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-checkMapData}{}}} \subsection{Method \code{checkMapData()}}{ Check that \code{data} variables include map variables \subsection{Usage}{ @@ -104,6 +106,7 @@ Dummy variable \code{defaultAes} is necessary to allow further modification of p } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/Scaling.Rd b/man/Scaling.Rd index 459edea0..cde14665 100644 --- a/man/Scaling.Rd +++ b/man/Scaling.Rd @@ -4,7 +4,9 @@ \name{Scaling} \alias{Scaling} \title{Scaling} -\format{An object of class \code{list} of length 8.} +\format{ +An object of class \code{list} of length 8. +} \usage{ Scaling } diff --git a/man/Theme.Rd b/man/Theme.Rd index e19a7dbb..af5fefc0 100644 --- a/man/Theme.Rd +++ b/man/Theme.Rd @@ -37,6 +37,7 @@ R6 class defining theme } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{Theme} object \subsection{Usage}{ @@ -76,6 +77,7 @@ A new \code{Theme} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/ThemeAesProperties.Rd b/man/ThemeAesProperties.Rd index 4f3f7244..0e8f3cb0 100644 --- a/man/ThemeAesProperties.Rd +++ b/man/ThemeAesProperties.Rd @@ -32,6 +32,7 @@ R6 class defining theme aesthetic properties plots } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{ThemeAesProperties} object \subsection{Usage}{ @@ -71,6 +72,7 @@ A new \code{ThemeAesProperties} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/ThemeFont.Rd b/man/ThemeFont.Rd index 94558fd2..b94cdcba 100644 --- a/man/ThemeFont.Rd +++ b/man/ThemeFont.Rd @@ -30,6 +30,7 @@ R6 class defining theme fonts } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{ThemeFont} object \subsection{Usage}{ @@ -54,6 +55,7 @@ A new \code{ThemeFont} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/TimeProfileDataMapping.Rd b/man/TimeProfileDataMapping.Rd index 18cc222a..d02a1d7c 100644 --- a/man/TimeProfileDataMapping.Rd +++ b/man/TimeProfileDataMapping.Rd @@ -34,6 +34,7 @@ R6 class defining the configuration of a \code{ggplot} object for time profile p } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{TimeProfileDataMapping} object \subsection{Usage}{ @@ -57,6 +58,7 @@ A new \code{TimeProfileDataMapping} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/TimeProfilePlotConfiguration.Rd b/man/TimeProfilePlotConfiguration.Rd index 567a3976..0e9d5134 100644 --- a/man/TimeProfilePlotConfiguration.Rd +++ b/man/TimeProfilePlotConfiguration.Rd @@ -32,6 +32,7 @@ R6 class defining the configuration of a \code{ggplot} object for time profile p } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{TimeProfilePlotConfiguration} object \subsection{Usage}{ @@ -56,6 +57,7 @@ A new \code{TimeProfilePlotConfiguration} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/XAxisConfiguration.Rd b/man/XAxisConfiguration.Rd index 4f2099bc..ef92e968 100644 --- a/man/XAxisConfiguration.Rd +++ b/man/XAxisConfiguration.Rd @@ -26,6 +26,7 @@ R6 class defining the configuration of X-axis } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-setPlotAxis}{}}} \subsection{Method \code{setPlotAxis()}}{ Set axis configuration on a \code{ggplot} object \subsection{Usage}{ @@ -45,6 +46,7 @@ A \code{ggplot} object with updated axis properties } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/XYDataMapping.Rd b/man/XYDataMapping.Rd index 79e9ef25..a8771acf 100644 --- a/man/XYDataMapping.Rd +++ b/man/XYDataMapping.Rd @@ -27,6 +27,7 @@ R6 class for mapping \code{x} and \code{y} variable to \code{data} } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{XYDataMapping} object \subsection{Usage}{ @@ -48,6 +49,7 @@ A new \code{XYDataMapping} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-checkMapData}{}}} \subsection{Method \code{checkMapData()}}{ Check that \code{data} variables include map variables \subsection{Usage}{ @@ -70,6 +72,7 @@ Dummy variable \code{defaultAes} is necessary to allow further modification of p } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/XYGDataMapping.Rd b/man/XYGDataMapping.Rd index 18684437..aa451b9d 100644 --- a/man/XYGDataMapping.Rd +++ b/man/XYGDataMapping.Rd @@ -32,6 +32,7 @@ R6 class for mapping \code{x}, \code{y} and \code{GroupMapping} variables to \co } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-new}{}}} \subsection{Method \code{new()}}{ Create a new \code{XYGDataMapping} object \subsection{Usage}{ @@ -77,6 +78,7 @@ A new \code{XYGDataMapping} object } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-checkMapData}{}}} \subsection{Method \code{checkMapData()}}{ Check that \code{data} variables include map variables \subsection{Usage}{ @@ -99,6 +101,7 @@ Dummy variable \code{defaultAes} is necessary to allow further modification of p } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/YAxisConfiguration.Rd b/man/YAxisConfiguration.Rd index 3aa9a928..d5a221b1 100644 --- a/man/YAxisConfiguration.Rd +++ b/man/YAxisConfiguration.Rd @@ -33,6 +33,7 @@ R6 class defining the configuration of Y-axis } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-setPlotAxis}{}}} \subsection{Method \code{setPlotAxis()}}{ Set axis configuration on a \code{ggplot} object \subsection{Usage}{ @@ -52,6 +53,7 @@ A \code{ggplot} object with updated axis properties } \if{html}{\out{
}} \if{html}{\out{}} +\if{latex}{\out{\hypertarget{method-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ diff --git a/man/bigTheme.Rd b/man/bigTheme.Rd index 7f9d9181..8403808a 100644 --- a/man/bigTheme.Rd +++ b/man/bigTheme.Rd @@ -4,7 +4,9 @@ \name{bigTheme} \alias{bigTheme} \title{bigTheme} -\format{An object of class \code{Theme} (inherits from \code{ThemeFont}, \code{R6}) of length 12.} +\format{ +An object of class \code{Theme} (inherits from \code{ThemeFont}, \code{R6}) of length 12. +} \usage{ bigTheme } diff --git a/man/bwTheme.Rd b/man/bwTheme.Rd index 070c5cc0..2c8ed6fa 100644 --- a/man/bwTheme.Rd +++ b/man/bwTheme.Rd @@ -4,7 +4,9 @@ \name{bwTheme} \alias{bwTheme} \title{bwTheme} -\format{An object of class \code{Theme} (inherits from \code{ThemeFont}, \code{R6}) of length 12.} +\format{ +An object of class \code{Theme} (inherits from \code{ThemeFont}, \code{R6}) of length 12. +} \usage{ bwTheme } diff --git a/man/dataMappingLabel.Rd b/man/dataMappingLabel.Rd index 28f5538c..2e08f2b1 100644 --- a/man/dataMappingLabel.Rd +++ b/man/dataMappingLabel.Rd @@ -1,19 +1,19 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/plotconfiguration.R -\name{dataMappingLabel} -\alias{dataMappingLabel} -\title{dataMappingLabel} -\usage{ -dataMappingLabel(mapping = NULL, metaData = NULL) -} -\arguments{ -\item{mapping}{mapping variable on label} - -\item{metaData}{metaData containing unit of variable} -} -\value{ -label character of variable with its unit -} -\description{ -dataMappingLabel create an axis label with unit if available +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/plotconfiguration.R +\name{dataMappingLabel} +\alias{dataMappingLabel} +\title{dataMappingLabel} +\usage{ +dataMappingLabel(mapping = NULL, metaData = NULL) +} +\arguments{ +\item{mapping}{mapping variable on label} + +\item{metaData}{metaData containing unit of variable} +} +\value{ +label character of variable with its unit +} +\description{ +dataMappingLabel create an axis label with unit if available } diff --git a/man/defaultTheme.Rd b/man/defaultTheme.Rd index d231ab85..a3fc03aa 100644 --- a/man/defaultTheme.Rd +++ b/man/defaultTheme.Rd @@ -4,7 +4,9 @@ \name{defaultTheme} \alias{defaultTheme} \title{defaultTheme} -\format{An object of class \code{Theme} (inherits from \code{ThemeFont}, \code{R6}) of length 12.} +\format{ +An object of class \code{Theme} (inherits from \code{ThemeFont}, \code{R6}) of length 12. +} \usage{ defaultTheme } diff --git a/man/getLabelWithUnit.Rd b/man/getLabelWithUnit.Rd index 877f4688..58322fa9 100644 --- a/man/getLabelWithUnit.Rd +++ b/man/getLabelWithUnit.Rd @@ -1,19 +1,19 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/plotconfiguration.R -\name{getLabelWithUnit} -\alias{getLabelWithUnit} -\title{getLabelWithUnit} -\usage{ -getLabelWithUnit(label, unit = NULL) -} -\arguments{ -\item{label}{text of axis label} - -\item{unit}{metaData containing unit of variable} -} -\value{ -label character of variable with its unit when available -} -\description{ -getLabelWithUnit paste unit to label when available +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/plotconfiguration.R +\name{getLabelWithUnit} +\alias{getLabelWithUnit} +\title{getLabelWithUnit} +\usage{ +getLabelWithUnit(label, unit = NULL) +} +\arguments{ +\item{label}{text of axis label} + +\item{unit}{metaData containing unit of variable} +} +\value{ +label character of variable with its unit when available +} +\description{ +getLabelWithUnit paste unit to label when available } diff --git a/man/pkRatioData.Rd b/man/pkRatioData.Rd index 568af96a..b93da62f 100644 --- a/man/pkRatioData.Rd +++ b/man/pkRatioData.Rd @@ -4,7 +4,8 @@ \name{pkRatioData} \alias{pkRatioData} \title{Test dataset of PK Ratios for 40 subjects.} -\format{A data frame with 40 rows and 11 variables: +\format{ +A data frame with 40 rows and 11 variables: \describe{ \item{IndividualID}{} \item{Population}{} @@ -17,7 +18,8 @@ \item{Simulated}{} \item{Observed}{} \item{Ratio}{} -}} +} +} \usage{ pkRatioData } diff --git a/man/pkRatioMetaData.Rd b/man/pkRatioMetaData.Rd index 232e8bdf..1363807c 100644 --- a/man/pkRatioMetaData.Rd +++ b/man/pkRatioMetaData.Rd @@ -4,12 +4,14 @@ \name{pkRatioMetaData} \alias{pkRatioMetaData} \title{Test metaData for pkRatioData} -\format{A list of lists for the 11 variables of pkRatioData +\format{ +A list of lists for the 11 variables of pkRatioData Each variable includes: \describe{ \item{unit}{} \item{dimension}{} -}} +} +} \usage{ pkRatioMetaData } diff --git a/man/timeProfileDataFrame.Rd b/man/timeProfileDataFrame.Rd index bce5b4d7..6bd9e683 100644 --- a/man/timeProfileDataFrame.Rd +++ b/man/timeProfileDataFrame.Rd @@ -4,7 +4,8 @@ \name{timeProfileDataFrame} \alias{timeProfileDataFrame} \title{Test dataset for time profiles with 3 subjects.} -\format{A data frame with 12 rows and 10 variables: +\format{ +A data frame with 12 rows and 10 variables: \describe{ \item{Time}{} \item{IndividualID}{} @@ -16,7 +17,8 @@ \item{Organ}{} \item{Compartment}{} \item{Simulated}{} -}} +} +} \usage{ timeProfileDataFrame } diff --git a/man/tlfStatFunctions.Rd b/man/tlfStatFunctions.Rd index 433146d3..4b5e52f6 100644 --- a/man/tlfStatFunctions.Rd +++ b/man/tlfStatFunctions.Rd @@ -4,7 +4,9 @@ \name{tlfStatFunctions} \alias{tlfStatFunctions} \title{tlfStatFunctions} -\format{An object of class \code{list} of length 31.} +\format{ +An object of class \code{list} of length 31. +} \usage{ tlfStatFunctions } diff --git a/man/tlfTheme.Rd b/man/tlfTheme.Rd index 7b320775..05ce3f28 100644 --- a/man/tlfTheme.Rd +++ b/man/tlfTheme.Rd @@ -4,7 +4,9 @@ \name{tlfTheme} \alias{tlfTheme} \title{tlfTheme} -\format{An object of class \code{Theme} (inherits from \code{ThemeFont}, \code{R6}) of length 12.} +\format{ +An object of class \code{Theme} (inherits from \code{ThemeFont}, \code{R6}) of length 12. +} \usage{ tlfTheme }