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Welcome to submit any questions here #1

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PSSUN opened this issue Jan 28, 2019 · 2 comments
Open

Welcome to submit any questions here #1

PSSUN opened this issue Jan 28, 2019 · 2 comments
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good first issue Good for newcomers

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@PSSUN
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PSSUN commented Jan 28, 2019

Dear users,
If you encounter any problems/bugs/doubts during use, or if you have any suggestions, you are welcome to submit them here to help us to improve CircCode.
Thank you for your using.
:)

@PSSUN PSSUN added the good first issue Good for newcomers label Oct 15, 2019
@PSSUN
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PSSUN commented Nov 2, 2019

Our tools have just been released, and the amount of data in the CircCode test is not big enough. If you encounter any problems during the operation, you are welcome to leave valuable comments, we will correct the first time!

我们的工具刚刚发布,CircCode测试的数据量还不够大。如果您在运行中遇到任何问题,欢迎您留下宝贵意见,我们将第一时间进行改正!

ツールがリリースされたばかりで、CircCodeテストのデータ量が十分ではありません。 操作中に問題が発生した場合は、貴重なコメントを残してください。最初に修正します!

Unsere Tools wurden gerade veröffentlicht, und die Datenmenge im CircCode-Test ist nicht groß genug. Sollten Sie während der Operation auf Probleme stoßen, können Sie gerne wertvolle Kommentare hinterlassen, die wir beim ersten Mal korrigieren!

Наши инструменты только что были выпущены, и объем данных в тесте CircCode недостаточно велик. Если у вас возникнут какие-либо проблемы во время операции, вы можете оставить ценные комментарии, мы исправим с первого раза!

우리의 도구가 방금 출시되었습니다.CircCode에서 테스트 한 데이터의 양이 충분하지 않습니다. 수술 중 문제가 발생하면 귀중한 의견을 남겨 주시면 처음 수정하겠습니다!

@Tanv1
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Tanv1 commented Mar 2, 2021

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Error in (function (edges, n = max(edges), directed = TRUE) :
At type_indexededgelist.c:117 : cannot create empty graph with negative number of vertices, Invalid value
Calls: classification -> createNet -> graph -> do.call ->
In addition: Warning message:
In max(edges) : no non-missing arguments to max; returning -Inf
Execution halted
Classify successfully!
sed: can't read /path/to/my_directory/CircCode_tem/ERR45678Aligned.sortedByCoord.out.bam.merge_result.RCRJ_result.csv_translated_circ.fa: No such file or directory
Traceback (most recent call last):
File "find_RCRJ_and_classify.py", line 369, in
main()
File "find_RCRJ_and_classify.py", line 355, in main
classify(coding_seq,
File "find_RCRJ_and_classify.py", line 102, in classify
seqs = SeqIO.parse(final_trans_file, 'fasta')
File "/home/.conda/envs/circcode_env/lib/python3.8/site-packages/Bio/SeqIO/init.py", line 607, in parse
return iterator_generator(handle)
File "/home/.conda/envs/circcode_env/lib/python3.8/site-packages/Bio/SeqIO/FastaIO.py", line 183, in init
super().init(source, mode="t", fmt="Fasta")
File "/home/.conda/envs/circcode_env/lib/python3.8/site-packages/Bio/SeqIO/Interfaces.py", line 47, in init
self.stream = open(source, "r" + mode)
FileNotFoundError: [Errno 2] No such file or directory: '/path/to/my_directory/CircCode_tem/ERR45678Aligned.sortedByCoord.out.bam.merge_result.RCRJ_result.csv_translated_circ.fa'

Help needed!

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