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User-defined pseudo-bulk samples? #30
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Hi @borshago, Thanks for the suggestion. I've made a modification to DUTest so that you can define a set of replicates for the input. When running DUTest, instead of defining Let me know if you have any issues. I will try to add an example to the Vignette in the near future. Cheers, |
Hi,
I have data with cells from various individuals representing two different groups, and I'm interested in comparing the same cell types between the groups. I would like to use the individuals as replicates when running DEXSeq for DTU. Is there an easy way to modify the existing code so that the pseudo-bulk samples correspond to all the cells of interest in the available individuals?
Best,
Daniel
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