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I was able to get CRAFT to complete when having it perform the sequence extraction for me. However, I am running into completion issues when providing CRAFT with the circRNA sequences.
When processing the individual circRNAs, I get this error for two of them.
|........................................................... | 84%
label: disease_association_RBP (with options)
List of 2
$ echo : logi FALSE
$ include: logi FALSE
Please wait we are processing your accessions ...
Error in file(file, ifelse(append, "a", "w")) :
all connections are in use
Calls: <Anonymous> ... <Anonymous> -> signalCondition -> <Anonymous> -> cat -> file
In addition: There were 50 or more warnings (use warnings() to see the first 50)
Execution halted
mv: cannot stat 'functional_predictions_single_circRNA.html': No such file or directory
For the last circRNA prediction, I get this error in the same location, at 84%.
The final prediction generating thefunctional_predictions_all_circRNA.htmland functional_predictions_all_circRNA.knit.md finishes completely with no errors.
I also get this error at the beginning of the run about permission denied to access .mature_hsa.fa. I checked my input files and I don't have this file in my inputs.
Putative sequence/s already extracted or provided by the user.
/scripts/pipeline_predictions.sh: line 102: /data/input/.mature_hsa.fa: Permission denied
MiRNA binding site prediction analysis already performed.
RBP binding site prediction analysis already performed.
Any help would be greatly appreciated. Thank you for your time.
Best,
Megan
The text was updated successfully, but these errors were encountered:
Hello,
I was able to get CRAFT to complete when having it perform the sequence extraction for me. However, I am running into completion issues when providing CRAFT with the circRNA sequences.
When processing the individual circRNAs, I get this error for two of them.
For the last circRNA prediction, I get this error in the same location, at 84%.
The final prediction generating the
functional_predictions_all_circRNA.html
andfunctional_predictions_all_circRNA.knit.md
finishes completely with no errors.I also get this error at the beginning of the run about permission denied to access
.mature_hsa.fa
. I checked my input files and I don't have this file in my inputs.Any help would be greatly appreciated. Thank you for your time.
Best,
Megan
The text was updated successfully, but these errors were encountered: