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run_e2e.sh
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run_e2e.sh
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#!/bin/sh
export $(xargs <.env)
# ./make_dirs.sh
# python3 download_dblp_corpus.py # TODO modify to add $LATEST_DATE in .env file
# gunzip -k ${DBLP_CORPUS_PATH}dblp-${LATEST_DATE}/dblp-${LATEST_DATE}.xml.gz
# python3 ./submodules/dblp-to-csv/XMLToCSV.py ${DBLP_CORPUS_PATH}dblp-${LATEST_DATE}/dblp-${LATEST_DATE}.xml ${DBLP_CORPUS_PATH}dblp-${LATEST_DATE}/dblp-*.dtd ${DBLP_CORPUS_PATH}dblp-${LATEST_DATE}/dblp_${LATEST_DATE}.csv
# python3 metadata_extractor.py 0 # import_to_mongo
# python3 metadata_extractor.py 1 # create_download_object
# ./split_dl_file.sh ${PUB_RETRIEVER_PATH}DBLP/dblp-${LATEST_DATE}/input "input_urls.jsonl" "urls_batch_" 1000
# java run publication retriever script # TODO create script to generate runner file
# python3 grobid_pdf2tei.py 1 DocFiles_*
# ./run_tei2json.sh 000 # executes -> python3 teixml2json_converter.py
# make options for this -> # TODO add option to run on subfolder
# python3 metadata_extractor.py 2 # match_key_to_filename
# script to merge batches (in PDFs/TEI_XML/json_references) (maybe)
# mv DocFiles_*/* .
# rm -rf DocFiles_*
# python3 dataset_generator.py
./run_mongoexport.sh