{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":629913163,"defaultBranch":"master","name":"boostdm-pipeline","ownerLogin":"bbglab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-04-19T09:25:04.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/1769478?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1724927485.0","currentOid":""},"activityList":{"items":[{"before":"888918337e275f1ddccf2bdb858288b628a9d82a","after":"83b9f33f87e68adcbb8266926d3f71c32d38dbc4","ref":"refs/heads/master","pushedAt":"2024-08-29T13:27:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"Create README.md","shortMessageHtmlLink":"Create README.md"}},{"before":"6b909dbc2f55c8193e371917311dd8f86eee7cea","after":"888918337e275f1ddccf2bdb858288b628a9d82a","ref":"refs/heads/master","pushedAt":"2024-08-29T10:28:44.000Z","pushType":"pr_merge","commitsCount":42,"pusher":{"login":"FedericaBrando","name":"Federica Brando","path":"/FedericaBrando","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52486325?s=80&v=4"},"commit":{"message":"Merge pull request #19 from bbglab/develop\n\nBoostDM 2024 pipeline version","shortMessageHtmlLink":"Merge pull request #19 from bbglab/develop"}},{"before":"93d2696c831b69e2b3364d47413282552957a8ab","after":null,"ref":"refs/heads/ordinal-clusters","pushedAt":"2024-08-29T10:15:18.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"FedericaBrando","name":"Federica Brando","path":"/FedericaBrando","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52486325?s=80&v=4"}},{"before":"0c4890aac7a42813f35706f4d55786bfcfaaef9b","after":null,"ref":"refs/heads/main","pushedAt":"2024-08-29T10:12:05.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"FedericaBrando","name":"Federica Brando","path":"/FedericaBrando","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52486325?s=80&v=4"}},{"before":"61f77b5662025c4fec33cfd85a7d597961d98c23","after":null,"ref":"refs/heads/dev/benchmarks","pushedAt":"2024-08-29T10:08:50.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"FedericaBrando","name":"Federica Brando","path":"/FedericaBrando","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52486325?s=80&v=4"}},{"before":"87ae750fb0f4a490dcf0783b2c1845ad304d86a5","after":null,"ref":"refs/heads/output-plots","pushedAt":"2024-08-29T10:08:12.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"FedericaBrando","name":"Federica Brando","path":"/FedericaBrando","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52486325?s=80&v=4"}},{"before":null,"after":"87ae750fb0f4a490dcf0783b2c1845ad304d86a5","ref":"refs/heads/output-plots","pushedAt":"2024-08-29T10:07:54.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"FedericaBrando","name":"Federica Brando","path":"/FedericaBrando","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52486325?s=80&v=4"},"commit":{"message":"MODIFY scan_errors.sh script to fit the new nextflow version in conda","shortMessageHtmlLink":"MODIFY scan_errors.sh script to fit the new nextflow version in conda"}},{"before":"87ae750fb0f4a490dcf0783b2c1845ad304d86a5","after":null,"ref":"refs/heads/output-plots","pushedAt":"2024-08-29T10:07:40.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"FedericaBrando","name":"Federica Brando","path":"/FedericaBrando","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52486325?s=80&v=4"}},{"before":"8353bd34a1e2e2385e1605da9a290d6b7dba4726","after":"624c950f7e4de4d664468c0d726d293cf922fef0","ref":"refs/heads/develop","pushedAt":"2024-08-28T10:16:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"Include documentation","shortMessageHtmlLink":"Include documentation"}},{"before":"ca4df824f5b498406d9e07de777053b6a82929a3","after":null,"ref":"refs/heads/dev/output-plots","pushedAt":"2024-08-22T11:35:23.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"}},{"before":"af23943403cb6700ea61f4bbba4d273933e04798","after":"8353bd34a1e2e2385e1605da9a290d6b7dba4726","ref":"refs/heads/develop","pushedAt":"2024-08-22T11:35:02.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"Merge pull request #18 from bbglab/dev/output-plots\n\nDev/output plots","shortMessageHtmlLink":"Merge pull request #18 from bbglab/dev/output-plots"}},{"before":null,"after":"ca4df824f5b498406d9e07de777053b6a82929a3","ref":"refs/heads/dev/output-plots","pushedAt":"2024-08-20T14:45:47.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"CHANGE blueprint legend format and title","shortMessageHtmlLink":"CHANGE blueprint legend format and title"}},{"before":"97fd4a8be4e96a85e1a99301304b6a03f2f20dad","after":"af23943403cb6700ea61f4bbba4d273933e04798","ref":"refs/heads/develop","pushedAt":"2024-07-14T10:54:53.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"Merge pull request #15 from bbglab/dev/benchmarks\n\nNEW step in the pipeline to conduct benchmarking","shortMessageHtmlLink":"Merge pull request #15 from bbglab/dev/benchmarks"}},{"before":null,"after":"61f77b5662025c4fec33cfd85a7d597961d98c23","ref":"refs/heads/dev/benchmarks","pushedAt":"2024-07-14T10:42:27.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"NEW step in the pipeline to conduct benchmarking","shortMessageHtmlLink":"NEW step in the pipeline to conduct benchmarking"}},{"before":"7456dafb556bc5048a2933ec2d6d93002aed37fc","after":"97fd4a8be4e96a85e1a99301304b6a03f2f20dad","ref":"refs/heads/develop","pushedAt":"2024-07-10T13:16:08.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"Merge pull request #13 from bbglab/output-plots\n\nNew step that generates output plots","shortMessageHtmlLink":"Merge pull request #13 from bbglab/output-plots"}},{"before":null,"after":"87ae750fb0f4a490dcf0783b2c1845ad304d86a5","ref":"refs/heads/output-plots","pushedAt":"2024-07-10T12:53:30.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"MODIFY scan_errors.sh script to fit the new nextflow version in conda","shortMessageHtmlLink":"MODIFY scan_errors.sh script to fit the new nextflow version in conda"}},{"before":"93e771f40b4138438aef860751b51d7fb4a52ada","after":"7456dafb556bc5048a2933ec2d6d93002aed37fc","ref":"refs/heads/develop","pushedAt":"2024-06-13T12:45:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"Create LICENSE","shortMessageHtmlLink":"Create LICENSE"}},{"before":"3f677fc44333838021e6d8ebf45ad089286bb113","after":"bf4b091c368bcc290986e61e8e58743c99ddfa13","ref":"refs/heads/ch","pushedAt":"2024-06-13T12:39:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"Create LICENSE","shortMessageHtmlLink":"Create LICENSE"}},{"before":"b8aaf0176ac5110ed432f0c510d8bc5a130b53cb","after":"93e771f40b4138438aef860751b51d7fb4a52ada","ref":"refs/heads/develop","pushedAt":"2024-05-09T09:39:51.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"FIX bug in discovery index calculation, whereby\nfor some tumor types samples were not correctly\naggregated, thus leading to inconsistent outputs","shortMessageHtmlLink":"FIX bug in discovery index calculation, whereby"}},{"before":"7d365c0cbc49c8cfee3d2f0553e961b4ce4e2440","after":"b8aaf0176ac5110ed432f0c510d8bc5a130b53cb","ref":"refs/heads/develop","pushedAt":"2024-05-05T19:14:49.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"FIX path channel in nextflow prediction script","shortMessageHtmlLink":"FIX path channel in nextflow prediction script"}},{"before":"720828f46603c873ff701aff75f18de5ab61126f","after":null,"ref":"refs/heads/dev/prediction-format","pushedAt":"2024-05-03T08:44:39.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"}},{"before":"6e5a4023d439518ca01d9aeb3a817a192ab2ba30","after":"7d365c0cbc49c8cfee3d2f0553e961b4ce4e2440","ref":"refs/heads/develop","pushedAt":"2024-05-03T08:44:33.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"Merge pull request #8 from bbglab/dev/prediction-format\n\nDev/prediction format","shortMessageHtmlLink":"Merge pull request #8 from bbglab/dev/prediction-format"}},{"before":"6844168cd62df221cd40ef135fa976db9f672628","after":"720828f46603c873ff701aff75f18de5ab61126f","ref":"refs/heads/dev/prediction-format","pushedAt":"2024-05-03T08:40:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"FIX output path in PredictSaturation process","shortMessageHtmlLink":"FIX output path in PredictSaturation process"}},{"before":"167fdc0b649c80d80cb540d71811225bd8b1b48f","after":null,"ref":"refs/heads/dev/MANE_implementation","pushedAt":"2024-05-03T08:27:54.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"FedericaBrando","name":"Federica Brando","path":"/FedericaBrando","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52486325?s=80&v=4"}},{"before":"f603df1d84a68fd279e71e6e7e95bb9fc6c72093","after":"6e5a4023d439518ca01d9aeb3a817a192ab2ba30","ref":"refs/heads/develop","pushedAt":"2024-05-03T08:27:51.000Z","pushType":"pr_merge","commitsCount":10,"pusher":{"login":"FedericaBrando","name":"Federica Brando","path":"/FedericaBrando","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52486325?s=80&v=4"},"commit":{"message":"Merge pull request #4 from bbglab/dev/MANE_implementation\n\nAdapt BoostDM pipeline to accept MANE transcript","shortMessageHtmlLink":"Merge pull request #4 from bbglab/dev/MANE_implementation"}},{"before":null,"after":"6844168cd62df221cd40ef135fa976db9f672628","ref":"refs/heads/dev/prediction-format","pushedAt":"2024-05-02T15:47:31.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"CHANGE the saturation prediction format\nrelated with https://github.com/bbglab/boostdm-pipeline/issues/5","shortMessageHtmlLink":"CHANGE the saturation prediction format"}},{"before":null,"after":"f603df1d84a68fd279e71e6e7e95bb9fc6c72093","ref":"refs/heads/develop","pushedAt":"2024-05-02T15:40:36.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"},"commit":{"message":"MODIFY feed of gene-ttypes that enter prediction:\n\"splitcv_meta\" instead of \"training_meta\"","shortMessageHtmlLink":"MODIFY feed of gene-ttypes that enter prediction:"}},{"before":"f061d3365187bc05301b477bd1c7a1e102fc36f6","after":null,"ref":"refs/heads/develop","pushedAt":"2024-05-02T15:31:48.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"koszulordie","name":"Ferran Muiños","path":"/koszulordie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70538316?s=80&v=4"}},{"before":"50d07f5a22f578ced2420c480cf536d88b0faf2a","after":"167fdc0b649c80d80cb540d71811225bd8b1b48f","ref":"refs/heads/dev/MANE_implementation","pushedAt":"2024-05-02T14:40:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FedericaBrando","name":"Federica Brando","path":"/FedericaBrando","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52486325?s=80&v=4"},"commit":{"message":"add: missing cnsq for splicing in aggregation dict","shortMessageHtmlLink":"add: missing cnsq for splicing in aggregation dict"}},{"before":"2fd37a19dbce28a8412a04ff36f8a21a4c379877","after":"50d07f5a22f578ced2420c480cf536d88b0faf2a","ref":"refs/heads/dev/MANE_implementation","pushedAt":"2024-05-02T14:36:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FedericaBrando","name":"Federica Brando","path":"/FedericaBrando","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52486325?s=80&v=4"},"commit":{"message":"add: missing consequences type from ensembl 111\n\n- solves #7","shortMessageHtmlLink":"add: missing consequences type from ensembl 111"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEp6bLxQA","startCursor":null,"endCursor":null}},"title":"Activity · bbglab/boostdm-pipeline"}