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_pkgdown.yml
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/
_pkgdown.yml
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url: https://bblodfon.github.io/emba
template:
params:
bootswatch: united
reference:
- title: General
desc: Run a full biomarker analysis on a given boolean model ensemble dataset
- contents:
- starts_with("biomarker_")
- title: Model Data Differences
desc: Get characteristic data model differences based on specified model groupings
- contents:
- matches("diff")
- -matches("plot")
- title: DrugLogics Pipeline Input
desc: Load the DrugLogics pipeline simulation results into R
- contents:
- get_synergy_scores
- get_model_predictions
- get_observed_synergies
- get_stable_state_from_models_dir
- get_link_operators_from_models_dir
- get_fitness_from_models_dir
- get_node_names
- get_model_names
- get_edges_from_topology_file
- construct_network
- title: Confusion Matrix Calculation
- contents:
- starts_with("calculate_")
- title: Helpers
- contents:
- get_observed_model_predictions
- get_unobserved_model_predictions
- get_synergy_subset_stats
- get_synergy_comparison_sets
- count_models_that_predict_synergies
- starts_with("get_biomarkers")
- is_comb_element_of
- validate_observed_synergies_data
- get_alt_drugname
- filter_network
- assign_link_operator_value_to_equation
- title: Plot
- contents:
- matches("plot")
- title: Print
- contents:
- starts_with("print_")