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azure-pipelines.yml
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azure-pipelines.yml
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# See https://docs.microsoft.com/azure/devops/pipelines/languages/python
jobs:
- job:
displayName: ubuntu-latest
pool:
vmImage: 'ubuntu-latest'
steps:
- checkout: self
persistCredentials: true
submodules: true
- script: echo "##vso[task.prependpath]$CONDA/bin"
displayName: Add conda to PATH
- script: conda create --yes --quiet --name ntroot_CI
displayName: Create Anaconda environment
- script: |
source activate ntroot_CI
conda install --yes --name ntroot_CI -c conda-forge -c bioconda python=3.9 mamba
mamba install --yes -c conda-forge -c bioconda meson ninja snakemake perl 'ntedit>=2.0.1' samtools bedtools
displayName: Install Conda packages
- script: |
source activate ntroot_CI
export PATH=$(pwd):$PATH
which ntroot
cd demo
./run_ntroot_demo.sh
displayName: Run ntRoot test
- job:
displayName: macOS-latest
pool:
vmImage: 'macOS-latest'
steps:
- checkout: self
persistCredentials: true
submodules: true
- script: echo "##vso[task.prependpath]$CONDA/bin"
displayName: Add conda to PATH
- script: conda create --yes --quiet --name ntroot_CI
displayName: Create Anaconda environment
- script: |
source activate ntroot_CI
conda install --yes --name ntroot_CI -c conda-forge -c bioconda python=3.9 mamba
mamba install --yes -c conda-forge -c bioconda snakemake perl 'ntedit>=2.0.1' samtools bedtools
displayName: Install Conda packages
- script: |
source activate ntroot_CI
export PATH=$(pwd):$PATH
which ntroot
cd demo
./run_ntroot_demo.sh
displayName: Run ntRoot test