diff --git a/example_notebooks/moving_pictures/moving_pictures.ipynb b/example_notebooks/moving_pictures/moving_pictures.ipynb index 1a4652f5..9fd28769 100644 --- a/example_notebooks/moving_pictures/moving_pictures.ipynb +++ b/example_notebooks/moving_pictures/moving_pictures.ipynb @@ -318,6 +318,10 @@ "\n", "Now things are more populated! The sample plot has at least a few samples from each of the four body sites -- and we've managed to recapitulate the general pattern of sample separation we saw with the autoselection, but with a more targeted log-ratio between two genera.\n", "\n", + "#### Sidenote: using multiple features from Emperor in the same side of a log-ratio\n", + "\n", + "If you'd like, you can specify arbitrary amounts of feature IDs on one side of a log-ratio. This can be done by separating the IDs by `|` characters and using the `contains any text separated by | (pipe)` searching option; see the [Selection tutorial](https://nbviewer.jupyter.org/github/biocore/qurro/blob/master/example_notebooks/selection/selection.ipynb) for details.\n", + "\n", "### 5.3. Hey, wait a second! There are only eight arrows in the biplot, but there are over five hundred features in the rank plot. What gives?\n", "\n", "This is just a result of how the biplot visualization was created in the DEICODE tutorial. In the `qiime emperor biplot` command, the `--p-number-of-features` parameter was set to 8, so only 8 arrows (i.e. features) are shown in the Emperor visualization of the biplot. Feel free to try rerunning this command with a different number of features to show more features in the biplot.\n", @@ -345,6 +349,13 @@ "\n", "This tutorial was based on the [DEICODE](https://nbviewer.jupyter.org/github/biocore/DEICODE/blob/master/ipynb/tutorials/moving-pictures.ipynb) and [QIIME 2](https://docs.qiime2.org/2019.10/tutorials/moving-pictures/) moving pictures tutorials." ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] } ], "metadata": {