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setup.py
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setup.py
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import re
import setuptools
import subprocess
import sys
try:
result = subprocess.run(
[sys.executable, "-m", "pip", "show", "pkg_utils"],
check=True, capture_output=True)
match = re.search(r'\nVersion: (.*?)\n', result.stdout.decode(), re.DOTALL)
assert match and tuple(match.group(1).split('.')) >= ('0', '0', '5')
except (subprocess.CalledProcessError, AssertionError):
subprocess.run(
[sys.executable, "-m", "pip", "install", "-U", "pkg_utils"],
check=True)
import os
import pkg_utils
name = 'biosimulations_bigg'
dirname = os.path.dirname(__file__)
package_data = {
name: [
os.path.join('source', 'LICENSE'),
os.path.join('final', '*.yml'),
],
}
# get package metadata
md = pkg_utils.get_package_metadata(dirname, name, package_data_filename_patterns=package_data)
# install package
setuptools.setup(
name='biosimulations-bigg',
version=md.version,
description=(
"Command-line program for publishing the BiGG model repository to BioSimulations."
),
long_description=md.long_description,
url="https://github.com/biosimulations/biosimulations-bigg",
download_url='https://github.com/biosimulations/biosimulations-bigg',
author='Center for Reproducible Biomedical Modeling',
author_email="info@biosimulations.org",
license="MIT",
keywords=[
'metabolism',
'biochemical network',
'cell biology',
'systems biology',
'computational biology',
'mathematical modeling',
'numerical simulation',
'flux balance analysis',
'FBA',
'Systems Biology Markup Language',
'SBML',
'BiGG',
],
packages=setuptools.find_packages(exclude=['tests', 'tests.*']),
package_data=md.package_data,
install_requires=md.install_requires,
extras_require=md.extras_require,
tests_require=md.tests_require,
dependency_links=md.dependency_links,
classifiers=[
'Development Status :: 3 - Alpha',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: MIT License',
'Topic :: Scientific/Engineering :: Bio-Informatics',
],
entry_points={
'console_scripts': [
'biosimulations-bigg = biosimulations_bigg.__main__:main',
],
},
)