This package provides several tutorials for BioSimulators Python APIs for simulation tools and BioSimulators-utils.
- Introspecting model/simulation files
- Creating simulation projects
- Validating models and simulations
- Finding suitable simulation tools
- Executing simulations
- Generating data visualizations for simulation results
- Combining multiple models and/or simulation tools into multi-algorithmic simulations
We recommend using the tutorials online through Binder.
Instructions for installing the BioSimulators simulation tools are available at https://biosimulators.org. A single Docker image with most of the tools is also available (ghcr.io/biosimulators/biosimulators
).
Instructions for installing BioSimulators utilities (BioSimulators utils) are available at https://docs.biosimulators.org. BioSimulators utils is also included in the Docker image described above.
Instructions for installing a Jupyter server for these tutorials are available at https://github.com/biosimulators/Biosimulators_tutorials. A Docker image is also available (ghcr.io/biosimulators/tutorials
).
Please help us make BioSimulators great! Please report any issues here.