{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":171951233,"defaultBranch":"master","name":"CellBender","ownerLogin":"broadinstitute","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-02-21T21:53:57.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/393552?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1721241254.0","currentOid":""},"activityList":{"items":[{"before":"9a464cdd550ead150f8feb56af84a94c30fd6f2c","after":"04c2f5b460721fd55cf62a4cd23617b2555d69b8","ref":"refs/heads/master","pushedAt":"2024-06-24T17:29:55.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"v0.3.2 (#368)\n\n* Updates for v0.3.2\r\n\r\n* Bump version to v0.3.2\r\n\r\n---------\r\n\r\nCo-authored-by: kshakir \r\nCo-authored-by: alecw \r\nCo-authored-by: Jura Pintar \r\nCo-authored-by: aawdeh ","shortMessageHtmlLink":"v0.3.2 (#368)"}},{"before":"87f33e17ee79ddb6d37d94db128b80cf2c917c47","after":"d7d228b491858054fac7e4780f575bc366bc9165","ref":"refs/heads/dev","pushedAt":"2024-06-24T17:00:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Bump version to v0.3.2","shortMessageHtmlLink":"Bump version to v0.3.2"}},{"before":"2c3dbe88c660f5e05d979d38c8e99259695b5286","after":"87f33e17ee79ddb6d37d94db128b80cf2c917c47","ref":"refs/heads/dev","pushedAt":"2024-06-24T16:59:24.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Merge branch 'dev' of github.com:broadinstitute/CellBender into dev","shortMessageHtmlLink":"Merge branch 'dev' of github.com:broadinstitute/CellBender into dev"}},{"before":"f3c88656aaae91d46a1e346a5637e41852d676a3","after":"2c3dbe88c660f5e05d979d38c8e99259695b5286","ref":"refs/heads/dev","pushedAt":"2024-06-24T14:50:31.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Azurize CellBender to run on ToA (#367)\n\nCPU-only version of WDL","shortMessageHtmlLink":"Azurize CellBender to run on ToA (#367)"}},{"before":"a71e18362be9dbe45d553c843e786edce2edeb6c","after":"f3c88656aaae91d46a1e346a5637e41852d676a3","ref":"refs/heads/dev","pushedAt":"2024-06-21T18:42:53.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Merge branch 'master' into dev","shortMessageHtmlLink":"Merge branch 'master' into dev"}},{"before":"72e6a3fa405c917a1e2faba971235eed037ef74f","after":"a71e18362be9dbe45d553c843e786edce2edeb6c","ref":"refs/heads/dev","pushedAt":"2024-04-23T13:53:21.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Retry: prevent ZeroDivisionError if initial test ELBO is the best test ELBO (#312)","shortMessageHtmlLink":"Retry: prevent ZeroDivisionError if initial test ELBO is the best tes…"}},{"before":"80514f06aea41795486ee0caea07a41b67498f90","after":"72e6a3fa405c917a1e2faba971235eed037ef74f","ref":"refs/heads/dev","pushedAt":"2024-04-22T19:58:20.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Fix test_elbo bug when retrying with more memory from checkpoint (#345)\n\nKeep test_elbo as part of model, and refer to it there from the retry code","shortMessageHtmlLink":"Fix test_elbo bug when retrying with more memory from checkpoint (#345)"}},{"before":"578c214e1afe9d737c4920c4296c63fcb98d4258","after":"80514f06aea41795486ee0caea07a41b67498f90","ref":"refs/heads/dev","pushedAt":"2024-04-22T19:43:11.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Add newer Cell Ranger feature types (#339)\n\nIn Cell Ranger 7+, there is a longer list of features one can specify in `cellranger multi`. These are added here to the list of allowed features.","shortMessageHtmlLink":"Add newer Cell Ranger feature types (#339)"}},{"before":"3a3f88451082e9bf4e135cbdbf9742743e662e57","after":"9a464cdd550ead150f8feb56af84a94c30fd6f2c","ref":"refs/heads/master","pushedAt":"2024-04-19T20:56:37.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Readme appearance (#352)\n\n* Tweak readme appearance","shortMessageHtmlLink":"Readme appearance (#352)"}},{"before":"d0cfc366f05d5de650ebdfa2c4164b273ccafde1","after":"578c214e1afe9d737c4920c4296c63fcb98d4258","ref":"refs/heads/dev","pushedAt":"2024-04-19T20:55:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Tweak readme appearance","shortMessageHtmlLink":"Tweak readme appearance"}},{"before":"97c1d408eb7bea18efded99777230cc473fce4cf","after":"d0cfc366f05d5de650ebdfa2c4164b273ccafde1","ref":"refs/heads/dev","pushedAt":"2024-04-19T20:47:43.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Merge branch 'master' into dev","shortMessageHtmlLink":"Merge branch 'master' into dev"}},{"before":"96d8595ead0c62884a7d67182f3fc45071b1f0e4","after":"3a3f88451082e9bf4e135cbdbf9742743e662e57","ref":"refs/heads/master","pushedAt":"2024-04-19T20:35:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Fix readthedocs build","shortMessageHtmlLink":"Fix readthedocs build"}},{"before":"278e199e88ce58eccec799790ce4bde408fb6d35","after":"96d8595ead0c62884a7d67182f3fc45071b1f0e4","ref":"refs/heads/master","pushedAt":"2024-04-19T20:24:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Fix version","shortMessageHtmlLink":"Fix version"}},{"before":"9b1b45c82adf9d95c45666480fbb61b45d87752f","after":"278e199e88ce58eccec799790ce4bde408fb6d35","ref":"refs/heads/master","pushedAt":"2024-04-19T20:18:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Fix readthedocs yaml","shortMessageHtmlLink":"Fix readthedocs yaml"}},{"before":"48736b360c03317c22628718b08d4a69cc656d6a","after":"9b1b45c82adf9d95c45666480fbb61b45d87752f","ref":"refs/heads/master","pushedAt":"2024-04-19T20:14:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Update readthedocs config","shortMessageHtmlLink":"Update readthedocs config"}},{"before":"609419a397d4723819656fd288a28d19abcfb6b3","after":"48736b360c03317c22628718b08d4a69cc656d6a","ref":"refs/heads/master","pushedAt":"2024-04-19T20:12:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Bump version","shortMessageHtmlLink":"Bump version"}},{"before":"e2fb5977cb187cb4b12172c9f77ed556bca92cb0","after":"609419a397d4723819656fd288a28d19abcfb6b3","ref":"refs/heads/master","pushedAt":"2024-04-11T04:00:57.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Fix v0.3.1 bug (#350)\n\n* Fix major bug in v0.3.1: negative counts (#347)","shortMessageHtmlLink":"Fix v0.3.1 bug (#350)"}},{"before":"254844681cbe3da72cc3a602dd145aa0aec87889","after":null,"ref":"refs/heads/sf-negative-count-bug-fix","pushedAt":"2024-04-11T02:38:59.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"}},{"before":"a4da38a2b97710afe51f01cd6c00df6bfc7aee46","after":"97c1d408eb7bea18efded99777230cc473fce4cf","ref":"refs/heads/dev","pushedAt":"2024-04-11T02:38:53.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Fix major bug in v0.3.1: negative counts (#347)\n\n* issue #348 lxml_html_clean dependency\r\n\r\n* Fix #306: noise count integer overflow\r\n\r\n* Introduce --force-use-checkpoint for redoing v0.3.1 runs\r\n\r\n* Add a warning to the README about v0.3.1","shortMessageHtmlLink":"Fix major bug in v0.3.1: negative counts (#347)"}},{"before":"49a3e3eb327dd2f06865adf970c13c2cb7998344","after":"254844681cbe3da72cc3a602dd145aa0aec87889","ref":"refs/heads/sf-negative-count-bug-fix","pushedAt":"2024-04-10T16:22:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Fix test failure introduced by --force-use-checkpoint","shortMessageHtmlLink":"Fix test failure introduced by --force-use-checkpoint"}},{"before":"00901cb34909207b9b97445e3e70266a4c820bf0","after":"49a3e3eb327dd2f06865adf970c13c2cb7998344","ref":"refs/heads/sf-negative-count-bug-fix","pushedAt":"2024-04-10T16:14:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Add the word \"warning\"","shortMessageHtmlLink":"Add the word \"warning\""}},{"before":"e04f30b1528e43063e588ff1323c822b0d10cda8","after":"00901cb34909207b9b97445e3e70266a4c820bf0","ref":"refs/heads/sf-negative-count-bug-fix","pushedAt":"2024-04-10T16:09:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Another attempt at rst rendering","shortMessageHtmlLink":"Another attempt at rst rendering"}},{"before":"2ba1b93eb842133c2d7576e24768c8a6e15abb60","after":"e04f30b1528e43063e588ff1323c822b0d10cda8","ref":"refs/heads/sf-negative-count-bug-fix","pushedAt":"2024-04-10T16:08:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"rst warning does not render in github readme","shortMessageHtmlLink":"rst warning does not render in github readme"}},{"before":"411cc395f775067a1c001cd7d75f3d080a0aaa97","after":"2ba1b93eb842133c2d7576e24768c8a6e15abb60","ref":"refs/heads/sf-negative-count-bug-fix","pushedAt":"2024-04-10T15:31:49.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Add a warning to the README about v0.3.1","shortMessageHtmlLink":"Add a warning to the README about v0.3.1"}},{"before":"2b1172798c9175f0a47a9a2a45f9e1813e3567ec","after":"411cc395f775067a1c001cd7d75f3d080a0aaa97","ref":"refs/heads/sf-negative-count-bug-fix","pushedAt":"2024-04-09T19:23:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Failsafe to ensure no negative entries in output","shortMessageHtmlLink":"Failsafe to ensure no negative entries in output"}},{"before":"1cb84794b6e477737b1808ebed1aa9383fd924b8","after":"2b1172798c9175f0a47a9a2a45f9e1813e3567ec","ref":"refs/heads/sf-negative-count-bug-fix","pushedAt":"2024-04-09T19:17:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"More informative print statement in test","shortMessageHtmlLink":"More informative print statement in test"}},{"before":"4ee23503932efaf69653524be4292f19fdfe8403","after":"1cb84794b6e477737b1808ebed1aa9383fd924b8","ref":"refs/heads/sf-negative-count-bug-fix","pushedAt":"2024-04-05T21:32:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Correct a test that was unfairly failing when gene dtype was int32","shortMessageHtmlLink":"Correct a test that was unfairly failing when gene dtype was int32"}},{"before":"dc8daad978bc065d9ac42ea5033758f6ec083e04","after":"4ee23503932efaf69653524be4292f19fdfe8403","ref":"refs/heads/sf-negative-count-bug-fix","pushedAt":"2024-04-05T21:13:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"integration test for negative outputs: also fails before fix","shortMessageHtmlLink":"integration test for negative outputs: also fails before fix"}},{"before":"4bdc4f4604045353c6fadf676ca7bcf273c77c2d","after":"dc8daad978bc065d9ac42ea5033758f6ec083e04","ref":"refs/heads/sf-negative-count-bug-fix","pushedAt":"2024-04-05T21:05:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Unit test that fails before fix","shortMessageHtmlLink":"Unit test that fails before fix"}},{"before":"b73fd5643d66eedfbba46cedcc24168e9387b4ed","after":"4bdc4f4604045353c6fadf676ca7bcf273c77c2d","ref":"refs/heads/sf-negative-count-bug-fix","pushedAt":"2024-04-05T20:50:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sjfleming","name":"Stephen Fleming","path":"/sjfleming","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10214815?s=80&v=4"},"commit":{"message":"Make dtypes more explicit","shortMessageHtmlLink":"Make dtypes more explicit"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNi0yNFQxNzoyOTo1NS4wMDAwMDBazwAAAARtyNq_","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNi0yNFQxNzoyOTo1NS4wMDAwMDBazwAAAARtyNq_","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNC0wNVQyMDo1MDo1Ny4wMDAwMDBazwAAAAQpQPdI"}},"title":"Activity · broadinstitute/CellBender"}