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progress.json
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progress.json
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{
"tasks": [
{
"taskId": 7,
"status": "COMPLETED",
"hash": "f4/363fb4",
"name": "methyl_extract (Extracting Methylation on mini_trimmed_sorted_markdup.bam)",
"exit": 0,
"submit": "2023-08-18T21:54:27.488+01:00",
"start": "2023-08-18T21:54:35.851+01:00",
"process": "methyl_extract",
"tag": "Extracting Methylation on mini_trimmed_sorted_markdup.bam",
"module": [],
"container": "public.ecr.aws/t1x4r7h8/nextflow-public:1.0.1",
"attempt": 1,
"script": "\n MethylDackel mbias ref/ref.fa mini_trimmed_sorted_markdup.bam --noSVG > mini_trimmed_sorted_markdup_Mbias.txt\n \n MethylDackel extract --minDepth 1 --maxVariantFrac 0.25 --OT 0,0,0,0 --OB 0,0,0,0 --CHG --CHH --methylKit ref/ref.fa mini_trimmed_sorted_markdup.bam -o mini_trimmed_sorted_markdup\n \n ",
"scratch": null,
"workdir": "s3://temp-nextflow-runs/f4/363fb4e264f85eab69d43a3358a46b",
"queue": "default_job_queue_spot",
"cpus": 1,
"memory": 4294967296,
"disk": null,
"time": null,
"env": null,
"errorAction": null,
"complete": "2023-08-18T21:54:56.099+01:00",
"duration": 28611,
"realtime": 39,
"pcpu": 80,
"rchar": 1975293,
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"readBytes": 0,
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"volCtxt": 1,
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"nativeId": "7dc27516-661c-4f14-bdd0-9f2403f3c5bf",
"executor": "awsbatch",
"cloudZone": "eu-north-1c",
"machineType": "m5.large",
"priceModel": "spot"
}
],
"progress": {
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},
"instant": 1692392096910
}