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PyAuDiSam release notes

1.2.0 (June 2024)

  • python 3.12 + pandas 2.2 migration (probably compatible with python 3.9, but for sure not earlier):
    • fix pandas 2 deprecations:
      • DataFrame/Series.append -> concat, applymap -> map, Series.iteritems -> items,
      • Styler.render -> to_html, Styler.where -> map,
      • 'S' freq alias deprecation from pandas 2.1,
      • pandas 2 not accepting strings in float-dtype columns,
      • fix a pandas future deprecation warning (setting an item of incompatible dtype),
      • warn about some Pandas 2 warnings to be fixed later,
    • silent a pandas 2.2 future warning about down casting and try to fix it for when it comes true (hope),
    • python 3.12 compatibility fixes:
      • fix ResultSet.fromExcel not closing the ExcelFile object,
      • fix special chars verification only in temp dir name (tempfile.mkdtemp returns an absolute path from python 3.12),
    • update python minimal version specification, and modules versions in requirements.txt (to new actually tested versions and pandas 2.2 minimum supported versions),
  • non-regression valtests for analyser & pre-analyser:
    • added a 2nd HTML report test method, through pandas.read_html,
    • improve HTML report comparison with prior BeautifulSoup prettification.

1.1.0 (May 2024)

  • full non-regression pytest-automated suite (90% coverage),
  • added support for MCDS 7.4 / Distance 7.5 (backward-compatible with MCDS 6.2 / Distance 6.x - 7.3),
  • easier customization of MCDS detection through MCDS_PATH environment variable,
  • logging of actual MCDS version used (rather than simply its installation folder),
  • improved packaging (add test dependencies, fix package building warnings),
  • fixed analysis results column set possibly varying with analysis params specs, due to auto-cleanup of all-empty columns by DataSet.dfData,
  • minor fixes and improvements:
    • fixed AFS-Steps sheet index in auto-filtered workbook reports for easier loading through pandas,
    • moved most of _main_ code to a new 'main' module, to make it more easily auto-testable,
    • improved configuration and documentation about code coverage measurements during pytests,

1.0.2 (February 2024)

  • added MCDSPreAnalyser.computeSampleStats() to compute distance stats for samples to pre-analyse,
  • fixed BalQual1 indicator computation (has been failing systematically for a long time !?),
  • start again porting the notebook-based test suite to pytest (~20 % done),
  • minor fixes and improvements to reports,
  • stricter requirements.txt to reflect actually tested software platform.

1.0.1 (May 2023)

  • new how-to and how it works documentation with concrete runnable scenarios and relevant field data.
  • command line mode minor fixes,
  • improved packaging.

0.9.3 (January 2022)

  • improvements, fixes and non-regression tests (notebook) for auto-filtered reports,
  • new command line mode (main sub-module),
  • improved packaging.

0.9.1 (October 2021)

The first really working version with its initial features:

  • point transect Distance Sampling withMCDS 6.2 under Windows 7+,
  • automated parallel run and reporting of multiple combinations of samples and analysis parameters,
  • optional auto-determination of the left and right truncation distances (through a parallelized optimisation system),
  • automated filtering and sorting of results for easier choice of the right analysis to select (among the numerous variants run) at the end for each sample.