README.md

gitsbe-model-analysis

This repo holds various boolean model datasets and the corresponding analyses performed on those. The main R package used in the analyses is the emba package.

Analyses:

• Based on an automated contructed network topology:
  • Atopo Biomarker analysis
  • Atopo Fitness vs Performance analysis
• Based on the CASCADE 2.0 network topology:
  • Cascade Synergy Biomarkers for AK-PD, PD-PI, PD-G2, PI-D1 synergies
  • Cascade Fitness vs Performance analysis (8 cell lines)
  • Cascade Fitness vs Performance analysis (AGS cell line)
  • Random model Stable States vs Performance Analysis
• Consensus-steady state model analysis