diff --git a/src/main/java/proteomics/ECL2.java b/src/main/java/proteomics/ECL2.java index 8a0be62..d5bb8bc 100644 --- a/src/main/java/proteomics/ECL2.java +++ b/src/main/java/proteomics/ECL2.java @@ -41,12 +41,12 @@ public static void main(String[] args) { String parameter_path = args[0].trim(); String spectra_path = args[1].trim(); - logger.info("ECL2 Version {}", version); + logger.info("ECL2 Version {}.", version); logger.info("Author: Fengchao Yu. Email: fyuab@connect.ust.hk"); try { String hostName = InetAddress.getLocalHost().getHostName(); - logger.info("Computer: {}", hostName); + logger.info("Computer: {}.", hostName); } catch (UnknownHostException ex) { logger.warn("Cannot get the computer's name."); } @@ -86,12 +86,12 @@ public static void main(String[] args) { } // Prepare search - logger.info("Protein database: {}", parameter_map.get("db")); + logger.info("Protein database: {}.", parameter_map.get("db")); logger.info("Indexing protein database..."); BuildIndex build_index_obj = new BuildIndex(parameter_map); MassTool mass_tool_obj = build_index_obj.returnMassTool(); - logger.info("Peptide chains number: {}", build_index_obj.getSeqEntryMap().size()); + logger.info("Peptide chains number: {}.", build_index_obj.getSeqEntryMap().size()); logger.info("Reading spectra..."); JMzReader spectra_parser = null; @@ -122,7 +122,7 @@ public static void main(String[] args) { Integer[] scanNumArray = num_spectrum_map.keySet().toArray(new Integer[num_spectrum_map.size()]); Arrays.sort(scanNumArray); - logger.info("Useful MS/MS spectra number: {}", num_spectrum_map.size()); + logger.info("Useful MS/MS spectra number: {}.", num_spectrum_map.size()); logger.info("Start searching...");