From 82cd63f97cace01861225e6254cba01fa7579a86 Mon Sep 17 00:00:00 2001 From: Fengchao Date: Tue, 30 Jan 2018 21:15:59 +0800 Subject: [PATCH] Delete a debug output. --- src/main/java/proteomics/Search/SearchWrap.java | 14 -------------- 1 file changed, 14 deletions(-) diff --git a/src/main/java/proteomics/Search/SearchWrap.java b/src/main/java/proteomics/Search/SearchWrap.java index 6a194ba..f6b2beb 100644 --- a/src/main/java/proteomics/Search/SearchWrap.java +++ b/src/main/java/proteomics/Search/SearchWrap.java @@ -52,20 +52,6 @@ public FinalResultEntry call() throws IOException { } ResultEntry resultEntry = search_obj.doSearch(spectrumEntry, xcorrPL); if (resultEntry != null) { - if (ECL2.debug) { - SparseBooleanVector chainVector1 = mass_tool_obj.buildTheoVector(resultEntry.getChain1(), (short) resultEntry.getLinkSite1(), spectrumEntry.precursor_mass - (float) (mass_tool_obj.calResidueMass(resultEntry.getChain1()) + MassTool.H2O), spectrumEntry.precursor_charge); - SparseBooleanVector chainVector2 = mass_tool_obj.buildTheoVector(resultEntry.getChain2(), (short) resultEntry.getLinkSite2(), spectrumEntry.precursor_mass - (float) (mass_tool_obj.calResidueMass(resultEntry.getChain2()) + MassTool.H2O), spectrumEntry.precursor_charge); - BufferedWriter writer = new BufferedWriter(new FileWriter(spectrumEntry.scan_num + ".chain.spectrum.csv")); - writer.write(resultEntry.getChain1() + " bin idx\n"); - for (int idx : chainVector1.getIdxSet()) { - writer.write(idx + "\n"); - } - writer.write(resultEntry.getChain2() + " bin idx\n"); - for (int idx : chainVector2.getIdxSet()) { - writer.write(idx + "\n"); - } - writer.close(); - } if (1 - (resultEntry.getSecondScore() / resultEntry.getScore()) > delta_c_t) { if (cal_evalue) { float originalTolerance;