From 8398aa4dc4764eacaedda96af24f83be71ea2c86 Mon Sep 17 00:00:00 2001
From: Fengchao <fyuab@connect.ust.hk>
Date: Mon, 29 Jan 2018 15:46:42 +0800
Subject: [PATCH] Fix a bug in C-C setting.

---
 src/main/java/proteomics/Index/BuildIndex.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/main/java/proteomics/Index/BuildIndex.java b/src/main/java/proteomics/Index/BuildIndex.java
index 4f517b9..3f0c3ae 100644
--- a/src/main/java/proteomics/Index/BuildIndex.java
+++ b/src/main/java/proteomics/Index/BuildIndex.java
@@ -84,7 +84,7 @@ public BuildIndex(Map<String, String> parameter_map) {
                 linker_mass = Float.valueOf(parameter_map.get("cl_mass")) - fix_mod_map.get('K');
             }
         } else if (linker_type == 2) {
-            linker_mass = Float.valueOf(parameter_map.get("cl_mass")) - fix_mod_map.get('C');
+            linker_mass = Float.valueOf(parameter_map.get("cl_mass"));
         } else {
             linker_mass = 0;
             logger.error("The cross-linker type cannot be recognized.");