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onlabel_CRAN_checks.yml
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# Workflow triggered when we have a new release candidate
# This action is adapted from https://github.com/t4d-gmbh/stubbed_versioning
name: On Label CRAN Checks
on:
pull_request:
types: [ labeled ]
env:
LABEL_CHECK: 'CRAN::check'
LABEL_SUCCESS: 'CRAN::passed'
LABEL_FAILURE: 'CRAN::failed'
BUILD_LOC: "./build"
permissions:
packages: read
contents: write
pull-requests: write
repository-projects: write
jobs:
set_target:
if: ${{ github.event.label.name == 'CRAN::check' }}
runs-on: ubuntu-latest
outputs:
target: ${{ steps.set_label.outputs.label }}
steps:
- id: set_label
run: |
echo "label=${{ env.LABEL_CHECK }}" >> "$GITHUB_OUTPUT"
check_label_exist:
needs:
- set_target
runs-on: ubuntu-latest
env:
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
OWNER: ${{ github.repository_owner }}
REPO: ${{ github.event.repository.name }}
permissions:
pull-requests: write
contents: write
steps:
- name: Assert labels ${{ env.LABEL_CHECK }} is defined
run: |
gh label create ${{ env.LABEL_CHECK }} --repo ${{ env.OWNER }}/${{ env.REPO }}
continue-on-error: true # make sure the next steps run also on failure
- name: Assert labels ${{ env.LABEL_SUCCESS }} is defined
run: |
gh label create ${{ env.LABEL_SUCCESS }} --repo ${{ env.OWNER }}/${{ env.REPO }}
continue-on-error: true # make sure the next steps run also on failure
- name: Assert labels ${{ env.LABEL_FAILURE }} is defined
run: |
gh label create ${{ env.LABEL_FAILURE }} --repo ${{ env.OWNER }}/${{ env.REPO }}
continue-on-error: true # make sure the next steps run also on failure
R_CMD_check:
runs-on: ubuntu-latest
needs:
- set_target
container:
image: ${{ vars.CONTAINER_SOURCE }}/${{ matrix.os }}/${{ matrix.compiler }}/${{ matrix.r-version }}/abn:${{ vars.CONTAINER_VERSION || 'latest' }}
credentials:
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}
env:
R_KEEP_PKG_SOURCE: yes # NOTE Jo: not sure why this is here?
strategy:
fail-fast: false
matrix:
r-version: ['release' , 'devel', 'patched'] # ['3.6.3', '4.1.1']
os: ['debian', 'fedora']
compiler: ['gcc', 'clang']
exclude:
- os: 'fedora'
r-version: 'release'
- os: 'fedora'
r-version: 'patched'
- r-version: 'patched'
compiler: 'clang'
- r-version: 'release'
compiler: 'clang'
steps:
- uses: actions/checkout@v4
- name: Disable renv
run: |
renv::deactivate()
shell: Rscript {0}
- name: Configure ABN for installation
run: |
autoreconf
- name: Install package dependencies
run: |
devtools::install_deps(pkg = '.', dependencies = TRUE, upgrade='never')
shell: Rscript {0}
- name: rcmdcheck run
run: |
options(crayon.enabled = TRUE)
cat("LOGNAME=", Sys.info()[["user"]], "\n", sep = "", file = Sys.getenv("GITHUB_ENV"), append = TRUE)
if (Sys.getenv("_R_CHECK_FORCE_SUGGESTS_", "") == "") Sys.setenv("_R_CHECK_FORCE_SUGGESTS_" = "false")
if (Sys.getenv("_R_CHECK_CRAN_INCOMING_", "") == "") Sys.setenv("_R_CHECK_CRAN_INCOMING_" = "false")
cat("check-dir-path=", file.path(getwd(), ("check")), "\n", file = Sys.getenv("GITHUB_OUTPUT"), sep = "", append = TRUE)
check_results <- rcmdcheck::rcmdcheck(".", args = (c("--no-manual", "--as-cran")), build_args = ("--no-manual"), error_on = ("error"), check_dir = ("check"))
shell: Rscript {0}
env:
BUILD_LOC: ./build
R_KEEP_PKG_SOURCE: yes
- name: rchmdchek show results
run: |
echo ::group::Show testthat output
find check -name 'testthat.Rout*' -exec cat '{}' \; || true
echo ::endgroup::
shell: bash --noprofile --norc -e -o pipefail {0}
env:
BUILD_LOC: ./build
R_KEEP_PKG_SOURCE: yes
report_CRAN_checks:
if: ${{ ( success() || failure() ) }}
needs:
- R_CMD_check
- check_label_exist
runs-on: ubuntu-latest
permissions:
contents: write
pull-requests: write
repository-projects: write
env:
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
OWNER: ${{ github.repository_owner }}
REPO: ${{ github.event.repository.name }}
steps:
- uses: actions/checkout@v4
- name: Check if on demand tasks succeeded
#TODO: Properly establish what has failead and what not
run: |
gh pr edit ${{ env.EVENT }} --remove-label ${{ env.LABEL_CHECK }} --repo ${{ env.OWNER }}/${{ env.REPO }}
if [ ${{ needs.R_CMD_check.result }} == "success" ]; then
gh pr edit ${{ env.EVENT }} --remove-label ${{ env.LABEL_FAILURE }} --repo ${{ env.OWNER }}/${{ env.REPO }}
gh pr edit ${{ env.EVENT }} --add-label ${{ env.LABEL_SUCCESS }} --repo ${{ env.OWNER }}/${{ env.REPO }}
echo "### ${{ github.event.label.url }} passed! :rocket:" >> $GITHUB_STEP_SUMMARY
exit 0
elif [ ${{ needs.R_CMD_check.result }} == "failure" ]; then
gh pr edit ${{ env.EVENT }} --remove-label ${{ env.LABEL_SUCCESS }} --repo ${{ env.OWNER }}/${{ env.REPO }}
gh pr edit ${{ env.EVENT }} --add-label ${{ env.LABEL_FAILURE }} --repo ${{ env.OWNER }}/${{ env.REPO }}
echo "### ${{ github.event.label.url }} failed!" >> $GITHUB_STEP_SUMMARY
exit 1
else
gh pr edit ${{ env.EVENT }} --add-label ${{ env.LABEL_CHECK }} --repo ${{ env.OWNER }}/${{ env.REPO }}
echo "On demand task outcome was ${{ steps.some_task.outcome }}"
fi
shell: bash
env:
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
EVENT: ${{ github.event.number }} # This is either the issue or pr
record_passed_label:
runs-on: ubuntu-latest
env:
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
OWNER: ${{ github.repository_owner }}
REPO: ${{ github.event.repository.name }}
permissions:
contents: write
pull-requests: write
repository-projects: write
outputs:
passed: ${{ steps.passed.outputs.PASSED}}
steps:
- name: Check if the pull request is labeled with ${{ env.LABEL_SUCCESS }} # 2
id: passed
run: |
if $( gh pr view ${{ env.EVENT }} --repo ${{ env.OWNER }}/${{ env.REPO }} --json "labels" --jq ".[].[].name" | grep --quiet ${{ env.LABEL_SUCCESS }}); then
echo "PASSED=true" >> $GITHUB_OUTPUT
else
echo "PASSED=false" >> $GITHUB_OUTPUT
fi
env:
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
EVENT: ${{ github.event.number }} # This is either the issue or pr
R_CMD_check_passed:
if: ${{ always() }}
needs:
- R_CMD_check
- record_passed_label
runs-on: ubuntu-latest
env:
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
OWNER: ${{ github.repository_owner }}
REPO: ${{ github.event.repository.name }}
steps:
- name: Assert that either checks passed on the label is present
run: |
if [[ ${{ needs.R_CMD_check.result }} == 'success' || ${{ needs.record_passed_label.outputs.passed }} == 'true' ]]; then
echo 'R CMD check status ok';
else exit 1; fi
test-coverage:
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
if: ${{ success() }}
needs: [R_CMD_check]
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::covr
needs: coverage
- name: Test coverage
run: |
Sys.setenv(NOT_CRAN = "true")
covr::codecov(
quiet = FALSE,
clean = FALSE,
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package"),
token = Sys.getenv("CODECOV_TOKEN")
)
shell: Rscript {0}
- name: Show testthat output
if: always()
run: |
## --------------------------------------------------------------------
find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash
- name: Upload test results
if: failure()
uses: actions/upload-artifact@v4
with:
name: coverage-test-failures
path: ${{ runner.temp }}/package