Error: useNames = NA is defunct

[deb0612]

Dear sir,
I ran the test dataset, and got the error below

[drewjbeh]

Hi there,

I cannot recreate this error. My environment with a recently installation of FRASER handles the test data perfectly.
What verison of FRASER are you running? (take a look at sessionInfo() in the R session producing the error you posted).

[Aokht17]

Hello,

It is not the FRASER version. Latest version of FRASER (1.99.0) also crushes with this error. The issue is (as far as I understood) in countRNAData --> extractSplitCountRanges -->
return(rowRanges(splitCounts[passed,])) } else{ return(rowRanges(splitCounts))
rowRanges function from matrixStats version 1.2.0 has a deprecated useNames = NA option. You need to specify TRUE or FALSE.

That is why downgrading matrixStats to 1.1.0 solves the issue (also discussed here satijalab/seurat#7501 (comment)).

Just a small modification to fix compatibility with new versions of matrixStats

[AtaJadidAhari]

Hi @deb0612 , as mentioned by @Aokht17 there was an issue with matrixStats versions which is fixed in the new FRASER versions >= 1.99.4
I will close the issue in two weeks if it stays inactive since it's resolved in newer FRASER versions.