You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
When running
fds <- countRNAData(settings)
with my own data (ONT bam files), the first steps work ok, but then I get
Mon Aug 29 17:58:49 2022: In total 239257 splice sites (acceptor/donor) will be counted ...
Error in reducer$value.cache[[as.character(idx)]] <- values :
wrong args for environment subassignment
In addition: Warning message:
In parallel::mccollect(wait = FALSE, timeout = 1) :
1 parallel job did not deliver a result
What could be the issue?
Thanks
The text was updated successfully, but these errors were encountered:
Hi, yes, we have seen this happening, most likely due to the program running out of memory. Can you please try rerunning it? If using DROP, use the -k parameter on the snakemake run, and be sure to have recount: FALSE in the config file.
c-mertes
transferred this issue from gagneurlab/FRASER-old-gagneurlab
May 27, 2024
Hello,
I installed the package on an Ubuntu 22 server.
When running
fds <- countRNAData(settings)
with my own data (ONT bam files), the first steps work ok, but then I get
Mon Aug 29 17:58:49 2022: In total 239257 splice sites (acceptor/donor) will be counted ...
Error in reducer$value.cache[[as.character(idx)]] <- values :
wrong args for environment subassignment
In addition: Warning message:
In parallel::mccollect(wait = FALSE, timeout = 1) :
1 parallel job did not deliver a result
What could be the issue?
Thanks
The text was updated successfully, but these errors were encountered: