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FRASER bam files for samples #8
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Hi @jjyotikataria, Can you describe why that would be helpful for you? Originally we included all of those example bam files in this package, but we had to reduce the number of example bam files that we provide in order to meet the bioconductor package guidelines. |
@ischeller I wanted to confirm some events by visualizing the results in Igv. Is there any way of sharing those bam files as of now? |
dear @jjyotikataria, https://www.ebi.ac.uk/arrayexpress/experiments/E-GEUV-6/files/processed/ To see how to run it on a subset have a look on our colab tutorial (http://tinyurl.com/RNA-ASHG-colab). |
dear @c-mertes Thank you for the elaborate reply. My goal was not to detect the outliers but to just visualize some specific events from the detected event lists and have a visualization to interpret graphically via Sashimi plots in IGV. But thats fine, if the other bam files cannot be shared. I have assessed the bam files for sample1,2 and 3 in the package already. I would love to see the GEUVADIS data set results. I went through the collab tutorial. Do I need to setup the IR notebook? |
The IR notebook should guide you on how to run it when you have the data and a sample annotation.
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It will be really helpful if you can provide the bam files for all the example data which includes sample4,sample5....sample9.
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