{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":213693892,"defaultBranch":"master","name":"drop","ownerLogin":"gagneurlab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-10-08T16:21:43.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/29893284?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1723622415.0","currentOid":""},"activityList":{"items":[{"before":"9a8b177d6c8a165c9be330b4bc6ff5d52f220ed5","after":"327579b297c0da4c76887d00f29a7e23d408f888","ref":"refs/heads/OHT","pushedAt":"2024-08-14T12:56:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrearaithel","name":"Andrea Raithel","path":"/andrearaithel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/133764907?s=80&v=4"},"commit":{"message":"Update prepare.rst to include useOHTtoObtainQ","shortMessageHtmlLink":"Update prepare.rst to include useOHTtoObtainQ"}},{"before":"6e27025c06581f6fba565eaf38e7672c9c0d0fa5","after":"9a8b177d6c8a165c9be330b4bc6ff5d52f220ed5","ref":"refs/heads/OHT","pushedAt":"2024-08-14T12:05:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrearaithel","name":"Andrea Raithel","path":"/andrearaithel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/133764907?s=80&v=4"},"commit":{"message":"add missing brackets in Summary.R","shortMessageHtmlLink":"add missing brackets in Summary.R"}},{"before":"61be28bd17f952f1e1466961d8908ec500bb0894","after":"6e27025c06581f6fba565eaf38e7672c9c0d0fa5","ref":"refs/heads/OHT","pushedAt":"2024-08-14T12:03:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrearaithel","name":"Andrea Raithel","path":"/andrearaithel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/133764907?s=80&v=4"},"commit":{"message":"add missing brackets in runOutrider.R","shortMessageHtmlLink":"add missing brackets in runOutrider.R"}},{"before":"3c689c72740b59dfc6379c6f011e29cb16337480","after":"61be28bd17f952f1e1466961d8908ec500bb0894","ref":"refs/heads/OHT","pushedAt":"2024-08-14T11:58:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrearaithel","name":"Andrea Raithel","path":"/andrearaithel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/133764907?s=80&v=4"},"commit":{"message":"add isTRUE() to if condition in Summary.R","shortMessageHtmlLink":"add isTRUE() to if condition in Summary.R"}},{"before":"7fa37b1c89a330c16766a338c138437778686f44","after":"3c689c72740b59dfc6379c6f011e29cb16337480","ref":"refs/heads/OHT","pushedAt":"2024-08-14T11:57:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrearaithel","name":"Andrea Raithel","path":"/andrearaithel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/133764907?s=80&v=4"},"commit":{"message":"add isTRUE() in if condition","shortMessageHtmlLink":"add isTRUE() in if condition"}},{"before":"eb218f34dfbcef4aacee1ee5fb11b7a249644b82","after":null,"ref":"refs/heads/fix_snakemake_and_knitr","pushedAt":"2024-08-14T08:00:15.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"}},{"before":"0f981073a4bd0931f98ff1f0ac66713342583a75","after":null,"ref":"refs/heads/fix_strand_specific","pushedAt":"2024-08-14T07:59:13.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"}},{"before":"d6bca12ad9a0052c5cbfa0bd0ddded7d34b2e846","after":null,"ref":"refs/heads/freeze_version","pushedAt":"2024-08-14T07:58:54.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"}},{"before":"f14666a0d792273670554ed1d78276128df4c308","after":null,"ref":"refs/heads/readthedocs","pushedAt":"2024-08-14T07:58:37.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"}},{"before":"e280c46cf8ba0734179e78268099ffe20de5a891","after":null,"ref":"refs/heads/bump_1.4.0","pushedAt":"2024-08-14T07:58:20.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"}},{"before":"3d634ea7665c6c3a79b6a0ee171cc4ad1a483169","after":null,"ref":"refs/heads/external_hpo","pushedAt":"2024-08-14T07:29:36.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"}},{"before":"ddef5b6e20e0922933d26fd33356690abe985bff","after":"7fa37b1c89a330c16766a338c138437778686f44","ref":"refs/heads/OHT","pushedAt":"2024-08-14T07:29:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vyepez88","name":"Vicente Yepez","path":"/vyepez88","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30469316?s=80&v=4"},"commit":{"message":"add metadata(ods)[[\"useOHTtoObtainQ\"]] <- FALSE","shortMessageHtmlLink":"add metadata(ods)[[\"useOHTtoObtainQ\"]] <- FALSE"}},{"before":"79358a93f1239b26ef25069acd09fcb2806b84c9","after":"ddef5b6e20e0922933d26fd33356690abe985bff","ref":"refs/heads/OHT","pushedAt":"2024-08-14T07:23:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vyepez88","name":"Vicente Yepez","path":"/vyepez88","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30469316?s=80&v=4"},"commit":{"message":"add useOHTtoObtainQ: true to config relative","shortMessageHtmlLink":"add useOHTtoObtainQ: true to config relative"}},{"before":"a8785fef389a2b7dcf1092b2cd86c34c6ab42a9d","after":"79358a93f1239b26ef25069acd09fcb2806b84c9","ref":"refs/heads/OHT","pushedAt":"2024-08-12T18:33:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vyepez88","name":"Vicente Yepez","path":"/vyepez88","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30469316?s=80&v=4"},"commit":{"message":"fix print message","shortMessageHtmlLink":"fix print message"}},{"before":"f182fe3fe2b9fa3261101003ee6314f0d7b2b0fc","after":"95685157866992e0c766fa712f727ef3fb0c7260","ref":"refs/heads/dev","pushedAt":"2024-08-07T14:26:29.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"remomve reduntant fail_on_warning in .readthedocs.yaml","shortMessageHtmlLink":"remomve reduntant fail_on_warning in .readthedocs.yaml"}},{"before":"307b5619ae5fda384f77ca528db5887d33e2f7d9","after":"f14666a0d792273670554ed1d78276128df4c308","ref":"refs/heads/readthedocs","pushedAt":"2024-08-07T13:20:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"remomve reduntant fail_on_warning in .readthedocs.yaml","shortMessageHtmlLink":"remomve reduntant fail_on_warning in .readthedocs.yaml"}},{"before":null,"after":"307b5619ae5fda384f77ca528db5887d33e2f7d9","ref":"refs/heads/readthedocs","pushedAt":"2024-08-07T11:55:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"install sphinx_rtd_theme in .readthedocs.yaml","shortMessageHtmlLink":"install sphinx_rtd_theme in .readthedocs.yaml"}},{"before":"d850645be06b4dd9b9dcea5877e9b13e71c87a32","after":"f182fe3fe2b9fa3261101003ee6314f0d7b2b0fc","ref":"refs/heads/dev","pushedAt":"2024-08-07T11:11:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vyepez88","name":"Vicente Yepez","path":"/vyepez88","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30469316?s=80&v=4"},"commit":{"message":"Update .readthedocs.yaml","shortMessageHtmlLink":"Update .readthedocs.yaml"}},{"before":"bdddf240454c7bf9e8fe283666c2563e6cc67614","after":"d850645be06b4dd9b9dcea5877e9b13e71c87a32","ref":"refs/heads/dev","pushedAt":"2024-08-07T10:42:32.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"Merge pull request #563 from gagneurlab/external_bam\n\nMinor changes and bug fixes","shortMessageHtmlLink":"Merge pull request #563 from gagneurlab/external_bam"}},{"before":"8e9fe9d9abb581fe20aaf6604997264a9616d698","after":"0d2283662420e50888e495a185055f9bf9f11cfc","ref":"refs/heads/external_bam","pushedAt":"2024-08-07T07:49:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"add .readthedocs.yaml v2 config file","shortMessageHtmlLink":"add .readthedocs.yaml v2 config file"}},{"before":"9cb212924b90d08af2fe3dfa0caffdded6a767fd","after":"3d634ea7665c6c3a79b6a0ee171cc4ad1a483169","ref":"refs/heads/external_hpo","pushedAt":"2024-08-06T13:11:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"Create .readthedocs.yaml","shortMessageHtmlLink":"Create .readthedocs.yaml"}},{"before":"5f07519e0e5060f05c075fc18dca612d5067cebc","after":"8e9fe9d9abb581fe20aaf6604997264a9616d698","ref":"refs/heads/external_bam","pushedAt":"2024-08-06T12:55:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"fix build badge status","shortMessageHtmlLink":"fix build badge status"}},{"before":"57d0b35c3d9758245a552b322c5f6ba755a51e86","after":"a8785fef389a2b7dcf1092b2cd86c34c6ab42a9d","ref":"refs/heads/OHT","pushedAt":"2024-07-31T11:33:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrearaithel","name":"Andrea Raithel","path":"/andrearaithel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/133764907?s=80&v=4"},"commit":{"message":"update requirements to use newest OUTRIDER-OHT branch","shortMessageHtmlLink":"update requirements to use newest OUTRIDER-OHT branch"}},{"before":"122aaa58ec67cd4842f3d5e20d697e5253c07140","after":"5f07519e0e5060f05c075fc18dca612d5067cebc","ref":"refs/heads/external_bam","pushedAt":"2024-07-29T16:49:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"check strand specificity in each drop group as opposed to all samples","shortMessageHtmlLink":"check strand specificity in each drop group as opposed to all samples"}},{"before":"da561f9d1fe13290e70bc9e4003f81bb2897124f","after":"122aaa58ec67cd4842f3d5e20d697e5253c07140","ref":"refs/heads/external_bam","pushedAt":"2024-07-29T15:57:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"fix pandas warning in SampleParams","shortMessageHtmlLink":"fix pandas warning in SampleParams"}},{"before":null,"after":"da561f9d1fe13290e70bc9e4003f81bb2897124f","ref":"refs/heads/external_bam","pushedAt":"2024-07-26T11:14:28.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"Check BAM existence for non-external groups only","shortMessageHtmlLink":"Check BAM existence for non-external groups only"}},{"before":"f601c4be82345005d272b36a77089f5e38778d0c","after":"57d0b35c3d9758245a552b322c5f6ba755a51e86","ref":"refs/heads/OHT","pushedAt":"2024-07-15T21:17:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrearaithel","name":"Andrea Raithel","path":"/andrearaithel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/133764907?s=80&v=4"},"commit":{"message":"add OHT key to AE test config","shortMessageHtmlLink":"add OHT key to AE test config"}},{"before":"3f7d8ffa46800bfe1da28d4e86dd3880844c3658","after":"f601c4be82345005d272b36a77089f5e38778d0c","ref":"refs/heads/OHT","pushedAt":"2024-07-15T18:41:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrearaithel","name":"Andrea Raithel","path":"/andrearaithel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/133764907?s=80&v=4"},"commit":{"message":"change OUTRIDER source to OHT branch","shortMessageHtmlLink":"change OUTRIDER source to OHT branch"}},{"before":null,"after":"3f7d8ffa46800bfe1da28d4e86dd3880844c3658","ref":"refs/heads/OHT","pushedAt":"2024-07-11T17:17:18.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"andrearaithel","name":"Andrea Raithel","path":"/andrearaithel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/133764907?s=80&v=4"},"commit":{"message":"integrate OHT as default to find q in aberrant expression","shortMessageHtmlLink":"integrate OHT as default to find q in aberrant expression"}},{"before":"da0ca79a5ab4a7d8510968a7a69b21f76f2bcd45","after":"9cb212924b90d08af2fe3dfa0caffdded6a767fd","ref":"refs/heads/external_hpo","pushedAt":"2024-06-24T09:04:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"params type in rule sampleAnnotation","shortMessageHtmlLink":"params type in rule sampleAnnotation"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEmkEtIgA","startCursor":null,"endCursor":null}},"title":"Activity ยท gagneurlab/drop"}