Update drop version for /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3 to version 1.3.3 WARNING: Less than 30 IDs in DROP_GROUP outrider check for missing R packages AberrantSplicing has been turned off in the config file MonoallelicExpression has been turned off in the config file rnaVariantCalling has been turned off in the config file Structuring dependencies... Dependencies file generated at: /tmp/tmpph4fun3h Building DAG of jobs... Using shell: /usr/bin/bash Provided cores: 10 Rules claiming more threads will be scaled down. Job stats: job count min threads max threads --------------------------------------------------------- ------- ------------- ------------- AberrantExpression_pipeline_Counting_Datasets_R 1 1 1 AberrantExpression_pipeline_Counting_Summary_R 1 1 1 AberrantExpression_pipeline_Counting_countReads_R 2 1 1 AberrantExpression_pipeline_Counting_filterCounts_R 1 1 1 AberrantExpression_pipeline_Counting_mergeCounts_R 1 10 10 AberrantExpression_pipeline_OUTRIDER_Datasets_R 1 1 1 AberrantExpression_pipeline_OUTRIDER_Summary_R 1 1 1 AberrantExpression_pipeline_OUTRIDER_pvalsOutrider_R 1 10 10 AberrantExpression_pipeline_OUTRIDER_results_R 1 1 1 AberrantExpression_pipeline_OUTRIDER_runOutrider_R 1 10 10 AberrantExpression_pipeline_aberrant_expression_readme_md 1 1 1 Pipeline_preprocessGeneAnnotation_R 1 1 1 aberrantExpression 1 1 1 aberrantExpression_bamStats 2 1 1 aberrantExpression_dependency 1 1 1 aberrantExpression_mergeBamStats 1 1 1 total 18 1 10 Select jobs to execute... [Tue May 30 14:48:30 2023] rule aberrantExpression_bamStats: input: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/A19_R8726_unAfMom/A19_R8726_unAfMom_frStrandSpesific_star1_alignmentAligned.sortedByCoord.out.bam, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/Scripts/Pipeline/chr_UCSC_NCBI.txt output: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/bam_stats/A19_R8726_unAfMom.txt jobid: 9 reason: Missing output files: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/bam_stats/A19_R8726_unAfMom.txt wildcards: sampleID=A19_R8726_unAfMom resources: tmpdir=/tmp [Tue May 30 14:48:30 2023] rule AberrantExpression_pipeline_aberrant_expression_readme_md: input: Scripts/AberrantExpression/pipeline/aberrant_expression_readme.md output: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/html/Scripts_AberrantExpression_pipeline_aberrant_expression_readme.html jobid: 11 reason: Missing output files: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/html/Scripts_AberrantExpression_pipeline_aberrant_expression_readme.html resources: tmpdir=/tmp [Tue May 30 14:48:30 2023] rule aberrantExpression_bamStats: input: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/A20_R8406_AfBoy/A20_R8406_AfBoy_frStrandSpesific_star1_alignmentAligned.sortedByCoord.out.bam, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/Scripts/Pipeline/chr_UCSC_NCBI.txt output: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/bam_stats/A20_R8406_AfBoy.txt jobid: 10 reason: Missing output files: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/bam_stats/A20_R8406_AfBoy.txt wildcards: sampleID=A20_R8406_AfBoy resources: tmpdir=/tmp [Tue May 30 14:48:30 2023] rule aberrantExpression_dependency: output: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/html/aberrant-expression-pipeline_dep.svg jobid: 17 reason: Missing output files: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/html/aberrant-expression-pipeline_dep.svg resources: tmpdir=/tmp [Tue May 30 14:48:30 2023] rule Pipeline_preprocessGeneAnnotation_R: input: /mnt/NAS_DEPO_1/REF_GENOMES/HUMAN/hg38/GENCODE/GRCh38_gencode_v38/Genome/gencode.v38.primary_assembly.annotation.gtf, Scripts/Pipeline/preprocessGeneAnnotation.R output: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/preprocess/v38/txdb.db, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/preprocess/v38/gene_name_mapping_v38.tsv, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/count_ranges.Rds log: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/.drop/tmp/AE/v38/preprocess.Rds jobid: 6 reason: Missing output files: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/count_ranges.Rds, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/preprocess/v38/gene_name_mapping_v38.tsv, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/preprocess/v38/txdb.db wildcards: annotation=v38 resources: tmpdir=/tmp [Tue May 30 14:48:31 2023] Finished job 10. 1 of 18 steps (6%) done [Tue May 30 14:48:31 2023] Finished job 9. 2 of 18 steps (11%) done Select jobs to execute... [Tue May 30 14:48:31 2023] rule aberrantExpression_mergeBamStats: input: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/bam_stats/A19_R8726_unAfMom.txt, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/bam_stats/A20_R8406_AfBoy.txt output: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/bam_stats/outrider.tsv jobid: 8 reason: Missing output files: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/bam_stats/outrider.tsv; Input files updated by another job: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/bam_stats/A20_R8406_AfBoy.txt, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/bam_stats/A19_R8726_unAfMom.txt wildcards: dataset=outrider resources: tmpdir=/tmp [Tue May 30 14:48:31 2023] Finished job 11. 3 of 18 steps (17%) done [Tue May 30 14:48:33 2023] Finished job 8. 4 of 18 steps (22%) done [Tue May 30 14:48:33 2023] Finished job 17. 5 of 18 steps (28%) done [Tue May 30 14:51:05 2023] Finished job 6. 6 of 18 steps (33%) done Select jobs to execute... [Tue May 30 14:51:05 2023] rule AberrantExpression_pipeline_Counting_countReads_R: input: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/A19_R8726_unAfMom/A19_R8726_unAfMom_frStrandSpesific_star1_alignmentAligned.sortedByCoord.out.bam, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/count_ranges.Rds, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/params/counts/A19_R8726_unAfMom_countParams.csv, Scripts/AberrantExpression/pipeline/Counting/countReads.R output: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/counts/A19_R8726_unAfMom.Rds log: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/.drop/tmp/AE/v38/counts/A19_R8726_unAfMom.Rds jobid: 5 reason: Missing output files: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/counts/A19_R8726_unAfMom.Rds; Input files updated by another job: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/count_ranges.Rds wildcards: annotation=v38, sampleID=A19_R8726_unAfMom resources: tmpdir=/tmp [Tue May 30 14:51:05 2023] rule AberrantExpression_pipeline_Counting_countReads_R: input: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/A20_R8406_AfBoy/A20_R8406_AfBoy_frStrandSpesific_star1_alignmentAligned.sortedByCoord.out.bam, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/count_ranges.Rds, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/params/counts/A20_R8406_AfBoy_countParams.csv, Scripts/AberrantExpression/pipeline/Counting/countReads.R output: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/counts/A20_R8406_AfBoy.Rds log: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/.drop/tmp/AE/v38/counts/A20_R8406_AfBoy.Rds jobid: 7 reason: Missing output files: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/counts/A20_R8406_AfBoy.Rds; Input files updated by another job: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/count_ranges.Rds wildcards: annotation=v38, sampleID=A20_R8406_AfBoy resources: tmpdir=/tmp [Tue May 30 15:52:42 2023] Finished job 5. 7 of 18 steps (39%) done [Tue May 30 15:59:59 2023] Finished job 7. 8 of 18 steps (44%) done Select jobs to execute... [Tue May 30 16:00:00 2023] rule AberrantExpression_pipeline_Counting_mergeCounts_R: input: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/counts/A19_R8726_unAfMom.Rds, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/counts/A20_R8406_AfBoy.Rds, /mnt/NAS_DEPO_2/gtex_v8/output/drop1.3.3_star1_expcounts/output/processed_results/exported_counts/outrider--hg38--v38/geneCounts.tsv.gz, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/count_ranges.Rds, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/params/merge/outrider_mergeParams.csv, Scripts/AberrantExpression/pipeline/Counting/mergeCounts.R output: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/outrider/outrider/total_counts.Rds log: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/.drop/tmp/AE/v38/outrider/merge.Rds jobid: 4 reason: Missing output files: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/outrider/outrider/total_counts.Rds; Input files updated by another job: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/count_ranges.Rds, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/counts/A20_R8406_AfBoy.Rds, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/counts/A19_R8726_unAfMom.Rds wildcards: annotation=v38, dataset=outrider threads: 10 resources: tmpdir=/tmp [Tue May 30 16:00:15 2023] Finished job 4. 9 of 18 steps (50%) done Select jobs to execute... [Tue May 30 16:00:15 2023] rule AberrantExpression_pipeline_Counting_filterCounts_R: input: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/outrider/outrider/total_counts.Rds, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/preprocess/v38/txdb.db, Scripts/AberrantExpression/pipeline/Counting/filterCounts.R output: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_results/aberrant_expression/v38/outrider/outrider/ods_unfitted.Rds log: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/.drop/tmp/AE/v38/outrider/filter.Rds jobid: 3 reason: Missing output files: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_results/aberrant_expression/v38/outrider/outrider/ods_unfitted.Rds; Input files updated by another job: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/aberrant_expression/v38/outrider/outrider/total_counts.Rds, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/preprocess/v38/txdb.db wildcards: annotation=v38, dataset=outrider resources: tmpdir=/tmp [Tue May 30 16:00:46 2023] Finished job 3. 10 of 18 steps (56%) done Select jobs to execute... [Tue May 30 16:00:46 2023] rule AberrantExpression_pipeline_OUTRIDER_runOutrider_R: input: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_results/aberrant_expression/v38/outrider/outrider/ods_unfitted.Rds, Scripts/AberrantExpression/pipeline/OUTRIDER/runOutrider.R output: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_results/aberrant_expression/v38/outrider/outrider/ods_fitted.Rds log: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/.drop/tmp/AE/v38/outrider/runOUTRIDER.Rds jobid: 15 reason: Missing output files: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_results/aberrant_expression/v38/outrider/outrider/ods_fitted.Rds; Input files updated by another job: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_results/aberrant_expression/v38/outrider/outrider/ods_unfitted.Rds wildcards: annotation=v38, dataset=outrider threads: 10 resources: tmpdir=/tmp [Tue May 30 16:17:50 2023] Finished job 15. 11 of 18 steps (61%) done Select jobs to execute... [Tue May 30 16:17:50 2023] rule AberrantExpression_pipeline_OUTRIDER_pvalsOutrider_R: input: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_results/aberrant_expression/v38/outrider/outrider/ods_fitted.Rds, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/preprocess/v38/gene_name_mapping_v38.tsv, Scripts/AberrantExpression/pipeline/OUTRIDER/pvalsOutrider.R output: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_results/aberrant_expression/v38/outrider/outrider/ods.Rds log: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/.drop/tmp/AE/v38/outrider/pvalsOUTRIDER.Rds jobid: 14 reason: Missing output files: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_results/aberrant_expression/v38/outrider/outrider/ods.Rds; Input files updated by another job: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_results/aberrant_expression/v38/outrider/outrider/ods_fitted.Rds, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/preprocess/v38/gene_name_mapping_v38.tsv wildcards: annotation=v38, dataset=outrider threads: 10 resources: tmpdir=/tmp [Tue May 30 16:18:04 2023] Error in rule AberrantExpression_pipeline_OUTRIDER_pvalsOutrider_R: jobid: 14 input: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_results/aberrant_expression/v38/outrider/outrider/ods_fitted.Rds, /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_data/preprocess/v38/gene_name_mapping_v38.tsv, Scripts/AberrantExpression/pipeline/OUTRIDER/pvalsOutrider.R output: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/output/processed_results/aberrant_expression/v38/outrider/outrider/ods.Rds log: /mnt/NAS_DEPO_2/OUR_PROJECTS/1501_3210640_2020/OUTPUTS/RNA-Seq/270223/drop-outrider_1.3.3/.drop/tmp/AE/v38/outrider/pvalsOUTRIDER.Rds (check log file(s) for error details) Shutting down, this might take some time. Exiting because a job execution failed. Look above for error message Complete log: .snakemake/log/2023-05-30T144827.863094.snakemake.log