> if (!requireNamespace("BiocManager", quietly=TRUE))
+     install.packages('BiocManager')
> BiocManager::install('FRASER')
'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cran.rstudio.com/
Bioconductor version 3.17 (BiocManager 1.30.21), R 4.3.1 (2023-06-16 ucrt)
Old packages: 'askpass', 'BiocManager', 'bslib', 'checkmate', 'cluster', 'cpp11', 'credentials', 'crosstalk', 'curl', 'dbplyr',
  'DelayedArray', 'DelayedMatrixStats', 'digest', 'dplyr', 'evaluate', 'fansi', 'fontawesome', 'foreign', 'fs', 'GenomeInfoDb',
  'GenomicFeatures', 'GenomicRanges', 'gert', 'ggplot2', 'ggrepel', 'gtable', 'heatmaply', 'htmltools', 'htmlwidgets', 'httpuv', 'httr',
  'httr2', 'jsonlite', 'KEGGREST', 'KernSmooth', 'knitr', 'labeling', 'lattice', 'lifecycle', 'lme4', 'Matrix', 'MatrixGenerics',
  'MatrixModels', 'matrixStats', 'mgcv', 'minqa', 'nlme', 'openssl', 'pkgload', 'plotly', 'plyr', 'prettyunits', 'processx', 'promises',
  'purrr', 'quantreg', 'R.utils', 'ragg', 'Rcpp', 'RcppArmadillo', 'RcppEigen', 'RCurl', 'remotes', 'Rhdf5lib', 'rlang', 'rmarkdown',
  'rpart', 'rprojroot', 'RSQLite', 'rstudioapi', 'rtracklayer', 'S4Arrays', 'S4Vectors', 'sass', 'scales', 'seriation', 'shiny',
  'spatial', 'stringi', 'stringr', 'survival', 'systemfonts', 'testthat', 'textshaping', 'tinytex', 'utf8', 'vctrs', 'VGAM', 'viridis',
  'waldo', 'withr', 'xfun', 'XML', 'xml2'
Update all/some/none? [a/s/n]: 
Update all/some/none? [a/s/n]: 
a
Warning: packages ‘GenomeInfoDb’, ‘GenomicRanges’, ‘ggplot2’, ‘MatrixGenerics’, ‘matrixStats’, ‘S4Vectors’ are in use and will not be installed
also installing the dependencies ‘permute’, ‘vegan’

Warning: unable to access index for repository https://bioconductor.org/packages/3.17/bioc/bin/windows/contrib/4.3:
  cannot open URL 'https://bioconductor.org/packages/3.17/bioc/bin/windows/contrib/4.3/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:
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Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:
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Warning: unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:
  cannot open URL 'https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3/PACKAGES'

  There are binary versions available but the source versions are later:
             binary    source needs_compilation
bslib         0.6.0     0.6.1             FALSE
foreign      0.8-85    0.8-86              TRUE
scales        1.2.1     1.3.0              TRUE
seriation     1.5.2     1.5.3              TRUE
XML       3.99-0.15 3.99-0.16              TRUE

  Binaries will be installed
Packages which are only available in source form, and may need compilation of C/C++/Fortran: ‘DelayedArray’ ‘Rhdf5lib’
  ‘rtracklayer’ ‘S4Arrays’
  These will not be installed
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Warning: cannot remove prior installation of package ‘xml2’
Warning: restored ‘xml2’

The downloaded binary packages are in
	C:\Users\User\AppData\Local\Temp\RtmpsZdfky\downloaded_packages
installing the source packages ‘bslib’, ‘DelayedMatrixStats’, ‘GenomicFeatures’, ‘KEGGREST’

trying URL 'https://cran.rstudio.com/src/contrib/bslib_0.6.1.tar.gz'
Content type 'application/x-gzip' length 6059587 bytes (5.8 MB)
downloaded 5.8 MB

trying URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/DelayedMatrixStats_1.22.6.tar.gz'
Content type 'application/gzip' length 277729 bytes (271 KB)
downloaded 271 KB

trying URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/GenomicFeatures_1.52.2.tar.gz'
Content type 'application/gzip' length 1179196 bytes (1.1 MB)
downloaded 1.1 MB

trying URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/KEGGREST_1.40.1.tar.gz'
Content type 'application/gzip' length 21902 bytes (21 KB)
downloaded 21 KB

* installing *source* package 'bslib' ...
** package 'bslib' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 
  namespace 'htmltools' 0.5.5 is being loaded, but >= 0.5.7 is required
Calls: <Anonymous> ... withCallingHandlers -> loadNamespace -> namespaceImport -> loadNamespace
Execution halted
ERROR: lazy loading failed for package 'bslib'
* removing 'C:/Program Files/R/R-4.3.1/library/bslib'
* restoring previous 'C:/Program Files/R/R-4.3.1/library/bslib'
* installing *source* package 'DelayedMatrixStats' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: package 'DelayedArray' 0.26.6 was found, but >= 0.26.7 is required by 'DelayedMatrixStats'
Execution halted
ERROR: lazy loading failed for package 'DelayedMatrixStats'
* removing 'C:/Program Files/R/R-4.3.1/library/DelayedMatrixStats'
* restoring previous 'C:/Program Files/R/R-4.3.1/library/DelayedMatrixStats'
* installing *source* package 'GenomicFeatures' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomicFeatures)
* installing *source* package 'KEGGREST' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KEGGREST)

The downloaded source packages are in
	‘C:\Users\User\AppData\Local\Temp\RtmpsZdfky\downloaded_packages’
There were 27 warnings (use warnings() to see them)