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setup.py
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setup.py
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#!/usr/bin/env python
# -*- coding: utf-8 -*-
from setuptools import setup, find_packages
requirements = [
]
test_requirements = [
"pytest",
]
setup(
name='rep',
version='0.0.1',
description="rep: RNA Expression prediction",
author="Florian Hölzlwimmer",
author_email='git.ich@frhoelzlwimmer.de',
url='https://gitlab.cmm.in.tum.de/gagneurlab/REP',
long_description="rep: toolkit for seq2seq models in genomics",
packages=find_packages(),
install_requires=requirements,
extras_require={
"develop": [
"bumpversion",
"wheel",
"jedi",
"epc",
"pytest",
"pytest-pep8",
"pytest-cov"
],
"dask": [
"dask",
"joblib",
],
"ray": [
"ray",
],
"spark": [
"pyspark",
"pyarrow",
],
"polars": [
"polars~=0.20.4",
"pyarrow",
]
},
entry_points={'console_scripts': ['rep = rep.__main__:main']},
license="MIT license",
zip_safe=False,
keywords=["model zoo", "deep learning",
"computational biology", "bioinformatics", "genomics"],
test_suite='tests',
package_data={'rep': ['logging.conf']},
tests_require=test_requirements
)