diff --git a/01-introduction.html b/01-introduction.html
index 688d9f33..240cbca7 100644
--- a/01-introduction.html
+++ b/01-introduction.html
@@ -821,7 +821,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/shell-genomics/01-introduction.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-08-15",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/02-the-filesystem.html b/02-the-filesystem.html
index 9b8601e5..b642064b 100644
--- a/02-the-filesystem.html
+++ b/02-the-filesystem.html
@@ -454,7 +454,7 @@ <h3 class="callout-title">Finding hidden directories</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>First use the <code>man</code> command to look at the options for
 <code>ls</code>.</p>
@@ -555,7 +555,7 @@ <h3 class="callout-title">Navigating practice</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb21">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -660,7 +660,7 @@ <h3 class="callout-title">Relative path resolution</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>No: there <em>is</em> a directory <code>backup</code> in
 <code>/Users</code>.</li>
@@ -793,7 +793,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/shell-genomics/02-the-filesystem.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/03-working-with-files.html b/03-working-with-files.html
index 1a303f23..b1dcec15 100644
--- a/03-working-with-files.html
+++ b/03-working-with-files.html
@@ -1148,7 +1148,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/shell-genomics/03-working-with-files.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/04-redirection.html b/04-redirection.html
index a8cbac14..6d50a01b 100644
--- a/04-redirection.html
+++ b/04-redirection.html
@@ -469,7 +469,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><code>grep -B1 GNATNACCACTTCC SRR098026.fastq</code></li>
 </ol><pre><code>@SRR098026.245 HWUSI-EAS1599_1:2:1:2:801 length=35
@@ -592,7 +592,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb12">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -647,7 +647,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb17">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1070,7 +1070,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4"> Show me the solution </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb47">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1114,7 +1114,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5"> Show me the solution </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb49">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1217,7 +1217,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/shell-genomics/04-redirection.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2024-03-14",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/05-writing-scripts.html b/05-writing-scripts.html
index c78511eb..a42d8eeb 100644
--- a/05-writing-scripts.html
+++ b/05-writing-scripts.html
@@ -485,7 +485,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Use <code>nano README.txt</code> to open the file.<br>
 Add today’s date and then use <kbd>Ctrl</kbd>-<kbd>X</kbd> followed by
@@ -572,7 +572,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <pre><code>$ bash bad-reads-script.sh
 Script finished!</code></pre>
@@ -739,7 +739,7 @@ <h3 id="moving-files-between-your-laptop-and-your-instance">Moving files between
 <button class="accordion-button spoiler-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSpoiler1" aria-expanded="false" aria-controls="collapseSpoiler1">
   <h3 class="accordion-header" id="headingSpoiler1">  <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div> SCP </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <p><code>scp</code> stands for ‘secure copy protocol’, and is a widely
 used UNIX tool for moving files between computers. The simplest way to
@@ -813,7 +813,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
 <button class="accordion-button spoiler-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSpoiler2" aria-expanded="false" aria-controls="collapseSpoiler2">
   <h3 class="accordion-header" id="headingSpoiler2">  <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div> PCSP </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <p>If you’re using a Windows PC without Git Bash, we recommend you use
 the <em>PSCP</em> program. This program is from the same suite of tools
@@ -940,7 +940,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/shell-genomics/05-writing-scripts.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2024-04-17",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/06-organization.html b/06-organization.html
index bdb25647..d1554214 100644
--- a/06-organization.html
+++ b/06-organization.html
@@ -450,7 +450,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb3">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -556,7 +556,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb8">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -766,7 +766,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/shell-genomics/06-organization.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/404.html b/404.html
index e86986d6..b5a96f1d 100644
--- a/404.html
+++ b/404.html
@@ -364,8 +364,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/shell-genomics/404.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/404.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 122bb2de..e5335e6e 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -385,7 +385,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/shell-genomics/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/Extra_lesson.html b/Extra_lesson.html
index b78333a2..12435e1b 100644
--- a/Extra_lesson.html
+++ b/Extra_lesson.html
@@ -430,7 +430,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb10">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -522,7 +522,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>There are two different sample load dates.</li>
 </ol><div class="codewrapper sourceCode" id="cb18">
@@ -613,7 +613,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb26">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -761,7 +761,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
   "identifier": "https://datacarpentry.github.io/shell-genomics/Extra_lesson.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index ec69ba39..2cecf24e 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -433,7 +433,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/shell-genomics/LICENSE.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index b1c83c6c..8f4009fd 100644
--- a/aio.html
+++ b/aio.html
@@ -954,7 +954,7 @@ <h3 class="callout-title">Finding hidden directories</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>First use the <code>man</code> command to look at the options for
 <code>ls</code>.</p>
@@ -1057,7 +1057,7 @@ <h3 class="callout-title">Navigating practice</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb21">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1167,7 +1167,7 @@ <h3 class="callout-title">Relative path resolution</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>No: there <em>is</em> a directory <code>backup</code> in
@@ -2240,7 +2240,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li><code>grep -B1 GNATNACCACTTCC SRR098026.fastq</code></li>
@@ -2369,7 +2369,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb12">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -2424,7 +2424,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb17">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -2853,7 +2853,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4"> Show me the solution </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb47">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -2897,7 +2897,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5"> Show me the solution </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb49">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -3112,7 +3112,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Use <code>nano README.txt</code> to open the file.<br>
 Add today’s date and then use <kbd>Ctrl</kbd>-<kbd>X</kbd> followed by
@@ -3203,7 +3203,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <pre><code>$ bash bad-reads-script.sh
 Script finished!</code></pre>
@@ -3380,7 +3380,7 @@ <h3 id="moving-files-between-your-laptop-and-your-instance">Moving files between
 <button class="accordion-button spoiler-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSpoiler1" aria-expanded="false" aria-controls="collapseSpoiler1">
   <h3 class="accordion-header" id="headingSpoiler1">  <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div> SCP </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <p><code>scp</code> stands for ‘secure copy protocol’, and is a widely
 used UNIX tool for moving files between computers. The simplest way to
@@ -3456,7 +3456,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
 <button class="accordion-button spoiler-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSpoiler2" aria-expanded="false" aria-controls="collapseSpoiler2">
   <h3 class="accordion-header" id="headingSpoiler2">  <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div> PCSP </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <p>If you’re using a Windows PC without Git Bash, we recommend you use
 the <em>PSCP</em> program. This program is from the same suite of tools
@@ -3671,7 +3671,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb3">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -3781,7 +3781,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb8">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4003,8 +4003,8 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/shell-genomics/aio.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/aio.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/discuss.html b/discuss.html
index 523be0b8..fb7741fc 100644
--- a/discuss.html
+++ b/discuss.html
@@ -378,7 +378,7 @@ <h1>Discussion</h1>
   "identifier": "https://datacarpentry.github.io/shell-genomics/discuss.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/etherpad_template.html b/etherpad_template.html
index 1f04e79f..eac3ed28 100644
--- a/etherpad_template.html
+++ b/etherpad_template.html
@@ -474,7 +474,7 @@ <h4 id="please-list-another-thing-you-found-less-useful-or-that-could-be-improve
   "identifier": "https://datacarpentry.github.io/shell-genomics/etherpad_template.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2024-03-14",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index 57fb6614..f1d9b246 100644
--- a/images.html
+++ b/images.html
@@ -422,8 +422,8 @@ <h3 id="05-writing-scripts-figure-1">Figure 1</h3>
   "url": "https://datacarpentry.github.io/shell-genomics/images.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/images.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index 58d95c6b..ee644767 100644
--- a/index.html
+++ b/index.html
@@ -411,8 +411,8 @@ <h3 class="callout-title">For Instructors</h3>
   "url": "https://datacarpentry.github.io/shell-genomics/index.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/index.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index e90f7ffa..bbcc1b24 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -500,8 +500,8 @@ <h4 id="command-prompt-editing">Command Prompt Editing<a class="anchor" aria-lab
   "url": "https://datacarpentry.github.io/shell-genomics/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor-notes.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/01-introduction.html b/instructor/01-introduction.html
index 68e9ccfb..d54652ed 100644
--- a/instructor/01-introduction.html
+++ b/instructor/01-introduction.html
@@ -823,7 +823,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/01-introduction.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-08-15",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/02-the-filesystem.html b/instructor/02-the-filesystem.html
index 4a95e85b..9f5d1abc 100644
--- a/instructor/02-the-filesystem.html
+++ b/instructor/02-the-filesystem.html
@@ -456,7 +456,7 @@ <h3 class="callout-title">Finding hidden directories</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>First use the <code>man</code> command to look at the options for
 <code>ls</code>.</p>
@@ -557,7 +557,7 @@ <h3 class="callout-title">Navigating practice</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb21">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -662,7 +662,7 @@ <h3 class="callout-title">Relative path resolution</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>No: there <em>is</em> a directory <code>backup</code> in
 <code>/Users</code>.</li>
@@ -795,7 +795,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/02-the-filesystem.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/03-working-with-files.html b/instructor/03-working-with-files.html
index a20e845f..e040151b 100644
--- a/instructor/03-working-with-files.html
+++ b/instructor/03-working-with-files.html
@@ -1150,7 +1150,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/03-working-with-files.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/04-redirection.html b/instructor/04-redirection.html
index a272dcf7..897b8a9f 100644
--- a/instructor/04-redirection.html
+++ b/instructor/04-redirection.html
@@ -471,7 +471,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><code>grep -B1 GNATNACCACTTCC SRR098026.fastq</code></li>
 </ol><pre><code>@SRR098026.245 HWUSI-EAS1599_1:2:1:2:801 length=35
@@ -594,7 +594,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb12">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -649,7 +649,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb17">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1072,7 +1072,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4"> Show me the solution </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb47">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1116,7 +1116,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5"> Show me the solution </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb49">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1219,7 +1219,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/04-redirection.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2024-03-14",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/05-writing-scripts.html b/instructor/05-writing-scripts.html
index 3e76f745..56ad9af9 100644
--- a/instructor/05-writing-scripts.html
+++ b/instructor/05-writing-scripts.html
@@ -487,7 +487,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Use <code>nano README.txt</code> to open the file.<br>
 Add today’s date and then use <kbd>Ctrl</kbd>-<kbd>X</kbd> followed by
@@ -574,7 +574,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <pre><code>$ bash bad-reads-script.sh
 Script finished!</code></pre>
@@ -741,7 +741,7 @@ <h3 id="moving-files-between-your-laptop-and-your-instance">Moving files between
 <button class="accordion-button spoiler-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSpoiler1" aria-expanded="false" aria-controls="collapseSpoiler1">
   <h3 class="accordion-header" id="headingSpoiler1">  <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div> SCP </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <p><code>scp</code> stands for ‘secure copy protocol’, and is a widely
 used UNIX tool for moving files between computers. The simplest way to
@@ -815,7 +815,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
 <button class="accordion-button spoiler-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSpoiler2" aria-expanded="false" aria-controls="collapseSpoiler2">
   <h3 class="accordion-header" id="headingSpoiler2">  <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div> PCSP </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <p>If you’re using a Windows PC without Git Bash, we recommend you use
 the <em>PSCP</em> program. This program is from the same suite of tools
@@ -942,7 +942,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/05-writing-scripts.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2024-04-17",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/06-organization.html b/instructor/06-organization.html
index c0a85e7e..4843d17f 100644
--- a/instructor/06-organization.html
+++ b/instructor/06-organization.html
@@ -452,7 +452,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb3">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -558,7 +558,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb8">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -768,7 +768,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/06-organization.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index f5893f66..54c4ec39 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -364,8 +364,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/shell-genomics/instructor/404.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/404.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index e549f1f0..f59a3d92 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -387,7 +387,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/Extra_lesson.html b/instructor/Extra_lesson.html
index a7bbc0b9..7775cbc0 100644
--- a/instructor/Extra_lesson.html
+++ b/instructor/Extra_lesson.html
@@ -432,7 +432,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb10">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -524,7 +524,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>There are two different sample load dates.</li>
 </ol><div class="codewrapper sourceCode" id="cb18">
@@ -615,7 +615,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb26">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -763,7 +763,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/Extra_lesson.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index 497f8cfd..bc8867f5 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -435,7 +435,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/LICENSE.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/aio.html b/instructor/aio.html
index 2c3f3202..5e5f2971 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -962,7 +962,7 @@ <h3 class="callout-title">Finding hidden directories</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>First use the <code>man</code> command to look at the options for
 <code>ls</code>.</p>
@@ -1065,7 +1065,7 @@ <h3 class="callout-title">Navigating practice</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb21">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1175,7 +1175,7 @@ <h3 class="callout-title">Relative path resolution</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>No: there <em>is</em> a directory <code>backup</code> in
@@ -2250,7 +2250,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li><code>grep -B1 GNATNACCACTTCC SRR098026.fastq</code></li>
@@ -2379,7 +2379,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb12">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -2434,7 +2434,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb17">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -2863,7 +2863,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4"> Show me the solution </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb47">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -2907,7 +2907,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5"> Show me the solution </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb49">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -3123,7 +3123,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Use <code>nano README.txt</code> to open the file.<br>
 Add today’s date and then use <kbd>Ctrl</kbd>-<kbd>X</kbd> followed by
@@ -3214,7 +3214,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <pre><code>$ bash bad-reads-script.sh
 Script finished!</code></pre>
@@ -3391,7 +3391,7 @@ <h3 id="moving-files-between-your-laptop-and-your-instance">Moving files between
 <button class="accordion-button spoiler-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSpoiler1" aria-expanded="false" aria-controls="collapseSpoiler1">
   <h3 class="accordion-header" id="headingSpoiler1">  <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div> SCP </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <p><code>scp</code> stands for ‘secure copy protocol’, and is a widely
 used UNIX tool for moving files between computers. The simplest way to
@@ -3467,7 +3467,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
 <button class="accordion-button spoiler-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSpoiler2" aria-expanded="false" aria-controls="collapseSpoiler2">
   <h3 class="accordion-header" id="headingSpoiler2">  <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div> PCSP </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <p>If you’re using a Windows PC without Git Bash, we recommend you use
 the <em>PSCP</em> program. This program is from the same suite of tools
@@ -3683,7 +3683,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb3">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -3793,7 +3793,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb8">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4015,8 +4015,8 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/shell-genomics/instructor/aio.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/aio.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/discuss.html b/instructor/discuss.html
index c8a436f9..f5622a13 100644
--- a/instructor/discuss.html
+++ b/instructor/discuss.html
@@ -380,7 +380,7 @@ <h1>Discussion</h1>
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/discuss.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/etherpad_template.html b/instructor/etherpad_template.html
index 76a229ae..6f8d46d5 100644
--- a/instructor/etherpad_template.html
+++ b/instructor/etherpad_template.html
@@ -476,7 +476,7 @@ <h4 id="please-list-another-thing-you-found-less-useful-or-that-could-be-improve
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/etherpad_template.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2024-03-14",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/images.html b/instructor/images.html
index 71e992ed..c7a55ab8 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -428,8 +428,8 @@ <h3 id="05-writing-scripts-figure-1">Figure 1</h3>
   "url": "https://datacarpentry.github.io/shell-genomics/instructor/images.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/images.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index 5d5623d7..1c077c0a 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -489,8 +489,8 @@ <h3 class="callout-title">For Instructors</h3>
   "url": "https://datacarpentry.github.io/shell-genomics/instructor/index.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/index.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 26991d65..ffc49d29 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -512,8 +512,8 @@ <h4 id="command-prompt-editing">Command Prompt Editing<a class="anchor" aria-lab
   "url": "https://datacarpentry.github.io/shell-genomics/instructor/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/instructor-notes.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index 5622eb89..1049beb6 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -480,8 +480,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://datacarpentry.github.io/shell-genomics/instructor/key-points.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/key-points.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index 98d4c4d0..b1fbcc96 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -336,8 +336,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/shell-genomics/instructor/profiles.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/profiles.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index 14db4a98..98f8b495 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -655,7 +655,7 @@ <h3 id="high-throughput-sequencing">High-throughput sequencing<a class="anchor"
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/reference.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index 9eda7bea..5d72761e 100644
--- a/key-points.html
+++ b/key-points.html
@@ -474,8 +474,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://datacarpentry.github.io/shell-genomics/key-points.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/key-points.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index 7e1a1e8e..b7a64e4e 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -1,5 +1,5 @@
 pandoc: 3.1.11
-pkgdown: 2.1.0
+pkgdown: 2.1.1
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-09-17T00:24Z
+last_built: 2024-09-24T00:28Z
diff --git a/profiles.html b/profiles.html
index 97b3bd96..cda78f52 100644
--- a/profiles.html
+++ b/profiles.html
@@ -336,8 +336,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/shell-genomics/profiles.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/profiles.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-09-17",
-  "datePublished": "2024-09-17"
+  "dateModified": "2024-09-24",
+  "datePublished": "2024-09-24"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index d8b3ffdd..40e1913d 100644
--- a/reference.html
+++ b/reference.html
@@ -653,7 +653,7 @@ <h3 id="high-throughput-sequencing">High-throughput sequencing<a class="anchor"
   "identifier": "https://datacarpentry.github.io/shell-genomics/reference.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2024-09-17"
+  "datePublished": "2024-09-24"
 }
 
   </script><script>