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After creat media folder with -media parameter still something wrong with higlass-manage (higlass.tilesets) #92

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ntukirafang opened this issue Oct 14, 2023 · 0 comments

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@ntukirafang
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Hi there,

I try to upload my cool file in higlass and everything goes well no matter start or upload.
Until I try to use higlass-manage view parameter.
The error message is below

(myenv) jimmyfang@ROLLEIFLEX:~/hg-data/media/media$ higlass-manage view /home/jimmyfang/hg-data/media/media/MLAF9_matrix_1kb.cool
state True
temp_dir: /tmp/higlass-docker
Inferred filetype: cooler
Inferred datatype: matrix
Traceback (most recent call last):
File "/home/jimmyfang/anaconda3/envs/myenv/bin/higlass-manage", line 8, in
sys.exit(cli())
File "/home/jimmyfang/anaconda3/envs/myenv/lib/python3.7/site-packages/click/core.py", line 1157, in call
return self.main(*args, **kwargs)
File "/home/jimmyfang/anaconda3/envs/myenv/lib/python3.7/site-packages/click/core.py", line 1078, in main
rv = self.invoke(ctx)
File "/home/jimmyfang/anaconda3/envs/myenv/lib/python3.7/site-packages/click/core.py", line 1688, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/jimmyfang/anaconda3/envs/myenv/lib/python3.7/site-packages/click/core.py", line 1434, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/jimmyfang/anaconda3/envs/myenv/lib/python3.7/site-packages/click/core.py", line 783, in invoke
return __callback(*args, **kwargs)
File "/home/jimmyfang/anaconda3/envs/myenv/lib/python3.7/site-packages/higlass_manage/view.py", line 157, in view
from higlass.client import Track, View, ViewConf
File "/home/jimmyfang/anaconda3/envs/myenv/lib/python3.7/site-packages/higlass/init.py", line 3, in
from .server import Server
File "/home/jimmyfang/anaconda3/envs/myenv/lib/python3.7/site-packages/higlass/server/init.py", line 8, in
from higlass.tilesets import LocalTileset
ImportError: cannot import name 'LocalTileset' from 'higlass.tilesets'

Also, I consider that it may be an installation issue. As a result, I try re-install again.
However, it still prints the same error message on it.
Would you help me to figure out this issue?

BTW, I also checked the docker installation. The higlass-manage start didn't indicate any error.

(myenv) jimmyfang@ROLLEIFLEX:~/hg-data/media/media$ higlass-manage start --no-public-data --media-dir /home/jimmyfang/hg-data/media/media/
Stopping previously running container
Pulling latest image...
done
Data directory: /home/jimmyfang/hg-data
Temp directory: ()
Starting... default 8989
Docker started: higlass-manage-container-default
sending request 1
Waiting to start (tilesets)...
sending request 2
Waiting to start (tilesets)...
sending request 3
Waiting to start (tilesets)...
sending request 4
Waiting to start (tilesets)...
sending request 5
Waiting to start (tilesets)...
sending request 6
Non 200 status code returned (502), waiting...
sending request 7
Non 200 status code returned (502), waiting...
sending request 8
Non 200 status code returned (502), waiting...
sending request 9
Non 200 status code returned (502), waiting...
sending request 10
Non 200 status code returned (502), waiting...
sending request 11
Non 200 status code returned (502), waiting...
sending request 12
Non 200 status code returned (502), waiting...
sending request 13
Non 200 status code returned (502), waiting...
sending request 14
Non 200 status code returned (502), waiting...
sending request 15
Non 200 status code returned (502), waiting...
sending request 16
Non 200 status code returned (502), waiting...
sending request 17
Non 200 status code returned (502), waiting...
sending request 18
Non 200 status code returned (502), waiting...
sending request 19
Non 200 status code returned (502), waiting...
sending request 20
Non 200 status code returned (502), waiting...
sending request 21
Non 200 status code returned (502), waiting...
sending request 22
Non 200 status code returned (502), waiting...
sending request 23
Non 200 status code returned (502), waiting...
sending request 24
Non 200 status code returned (502), waiting...
sending request 25
Non 200 status code returned (502), waiting...
sending request 26
Non 200 status code returned (502), waiting...
sending request 27
Non 200 status code returned (502), waiting...
sending request 28
Non 200 status code returned (502), waiting...
sending request 29
public_data: False
ret: b'{"uid": "default_local"}'
ret: ExecResult(exit_code=0, output=b'')
Replaced js file
Started

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