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MRML_Slicer

Matlab functions for adding modalities and scenes to a mrml scene file.

Requirements

Structure Tree

image

Adding Modalities

Add Volume

add_vol('../file.nii', 'background')

Functions:

info_vol

Function that get info from de header of the .nii file.

volume_node

Node that represents the volume, stores the references to the display and storage nodes and also basic info about the volume.

volumedisplay_node

Node that stores the info about how to display the volume in the scene. Here you can change, among others, the following parameters:

  • Window
  • Level
  • ColorNode
  • Threshold
  • Auto WindowLevel
  • Auto Threshold
  • Interpolate

volumearchetypestorage_node

Node that stores the info about the storage of the .nii volume file.

Add Model

add_model('../file.vtp')

Functions:

model_node

Node that represents the model, stores the references to the display and storage nodes and also basic info about the model.

modeldisplay_node

Node that stores the info about how to display the 3D view of the model in the scene. Here you can change, among others, the following parameters:

  • FrontfaceCulling
  • BackfaceCulling
  • EdgeVisibility
  • Visibility

modelstorage_node

Node that stores the info about the storage of the .vtp model file.

Add Markups

add_markups('../file.fcsv')

Functions:

markupsfiducial_node

Node that represents the fiducial markups, stores the references to the display and storage nodes and also basic info about the markups.

markupsdisplay_node

Node that stores the info about how to display the fiducial points in the scene. Here you can change, among others, the following parameters:

  • Opacity
  • Scale
  • Interpolation
  • Visibility

markupsstorage_node

Node that stores the info about the storage of the .fcsv file.

Add Volume Properties

add_volumeproperty('../file.vp')

Functions:

volumeproperty_node

Node that represents the volume property, stores the references to the storage node and also the properties of the volume.

volumepropertystorage_node

Node that stores the info about the storage of the .vp file.

Adding Scene View

Add SceneView

add_view()