diff --git a/.idea/artifacts/BSPAT.xml b/.idea/artifacts/BSPAT.xml
index b0d9105..52cda20 100644
--- a/.idea/artifacts/BSPAT.xml
+++ b/.idea/artifacts/BSPAT.xml
@@ -14,8 +14,8 @@
           <element id="library" level="project" name="commons-lang3-3.3.2" />
           <element id="library" level="project" name="commons-math-2.2" />
           <element id="library" level="project" name="guava" />
-          <element id="library" level="project" name="apache http" />
           <element id="library" level="project" name="jstl-1.2.1" />
+          <element id="library" level="project" name="apache http" />
         </element>
       </element>
       <element id="javaee-facet-resources" facet="BSPAT/web/Web" />
diff --git a/.idea/artifacts/BSPAT_war_exploded.xml b/.idea/artifacts/BSPAT_war_exploded.xml
index ed82a36..b657e77 100644
--- a/.idea/artifacts/BSPAT_war_exploded.xml
+++ b/.idea/artifacts/BSPAT_war_exploded.xml
@@ -14,8 +14,8 @@
           <element id="library" level="project" name="commons-lang3-3.3.2" />
           <element id="library" level="project" name="commons-math-2.2" />
           <element id="library" level="project" name="guava" />
-          <element id="library" level="project" name="apache http" />
           <element id="library" level="project" name="jstl-1.2.1" />
+          <element id="library" level="project" name="apache http" />
         </element>
       </element>
       <element id="javaee-facet-resources" facet="BSPAT/web/Web" />
diff --git a/BSPAT/BSPAT.iml b/BSPAT/BSPAT.iml
index 8941c51..c6aeb09 100644
--- a/BSPAT/BSPAT.iml
+++ b/BSPAT/BSPAT.iml
@@ -42,7 +42,6 @@
         <SOURCES />
       </library>
     </orderEntry>
-    <orderEntry type="library" name="apache http" level="project" />
     <orderEntry type="library" name="jstl-1.2.1" level="project" />
     <orderEntry type="module-library" scope="TEST">
       <library name="JUnit4">
@@ -54,6 +53,7 @@
         <SOURCES />
       </library>
     </orderEntry>
+    <orderEntry type="library" name="apache http" level="project" />
   </component>
   <component name="org.twodividedbyzero.idea.findbugs">
     <option name="_basePreferences">
diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/AnalysisServlet.java b/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/AnalysisServlet.java
index 03a538c..22c9534 100644
--- a/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/AnalysisServlet.java
+++ b/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/AnalysisServlet.java
@@ -90,16 +90,16 @@ public void doPost(HttpServletRequest request, HttpServletResponse response) {
 			}
 			constant.figureFormat = request.getParameter("figureFormat"); // set figure format
 			if (request.getParameter("criticalValue") != null) {
-				constant.criticalValue = Double.valueOf(request.getParameter("criticalValue"));
+				constant.criticalValue = Double.parseDouble(request.getParameter("criticalValue"));
 				constant.minMethylThreshold = 0.1;
 			} else if (request.getParameter("minmethyltext") != null) {
-				constant.minMethylThreshold = Double.valueOf(request.getParameter("minmethyltext"));
+				constant.minMethylThreshold = Double.parseDouble(request.getParameter("minmethyltext"));
 				constant.criticalValue = -1;
 			}
 
 			constant.SNPThreshold = Double.valueOf(request.getParameter("SNPThreshold"));
-			constant.conversionRateThreshold = Double.valueOf(request.getParameter("conversionRateThreshold"));
-			constant.sequenceIdentityThreshold = Double.valueOf(request.getParameter("sequenceIdentityThreshold"));
+			constant.conversionRateThreshold = Double.parseDouble(request.getParameter("conversionRateThreshold"));
+			constant.sequenceIdentityThreshold = Double.parseDouble(request.getParameter("sequenceIdentityThreshold"));
 
 			// clean up result directory and result zip file
 			Utilities.deleteFolderContent(constant.patternResultPath);
diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/MappingServlet.java b/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/MappingServlet.java
index c7188f9..406ef01 100644
--- a/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/MappingServlet.java
+++ b/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/MappingServlet.java
@@ -86,7 +86,7 @@ public void doPost(HttpServletRequest request, HttpServletResponse response) {
 			constant.refVersion = request.getParameter("refVersion");
 			constant.coorFileName = "coordinates.coor";
 			constant.qualsType = request.getParameter("qualsType");
-			constant.maxmis = Integer.valueOf(request.getParameter("maxmis"));
+			constant.maxmis = Integer.parseInt(request.getParameter("maxmis"));
 			constant.experiments = experiments;
 			constant.email = request.getParameter("email");
 			// execute BLAT query
@@ -105,7 +105,7 @@ public void doPost(HttpServletRequest request, HttpServletResponse response) {
 
 			// multiple threads to execute bismark mapping
 			ExecutorService executor;
-			if (Boolean.valueOf(properties.getProperty("useSingleThread"))) {
+			if (Boolean.parseBoolean(properties.getProperty("useSingleThread"))) {
 				executor = Executors.newSingleThreadExecutor(); // single thread
 			} else {
 				executor = Executors.newCachedThreadPool(); // multiple threads
@@ -185,7 +185,7 @@ private void handleUploadedFiles(Constant constant, HttpServletRequest request,
 				// save ref file in ref folder
 				IO.saveFileToDisk(part, constant.originalRefPath, fileName);
 			} else if (fieldName.startsWith("seqFile")) { // deal with uploaded seq file
-				int seqFileIndex = Integer.valueOf(part.getName().replace("seqFile", ""));
+				int seqFileIndex = Integer.parseInt(part.getName().replace("seqFile", ""));
 				for (Experiment experiment : experiments) { // match file index and seq file index
 					if (experiment.getIndex() == seqFileIndex) {
 						experiment.setSeqFile(fileName);
diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java
index 0c2af2f..e004fb9 100644
--- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java
+++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java
@@ -74,16 +74,17 @@ public List<ReportSummary> execute(String experimentName,
 					.length()) {
 				throw new RuntimeException("invalid target coordinates! out of reference!");
 			}
-			String tmpTargetRefSeq;
-			if (targetStart != 0 && targetEnd != refSeq.length() - 1) {
-				tmpTargetRefSeq = refSeq.substring(targetStart - 1,
-						targetEnd + 2); // used to include one more bp on both ends to detect CpG sites.
-			} else {
-				tmpTargetRefSeq = refSeq.substring(targetStart,
-						targetEnd + 1);
+			int tmpStart = 0, tmpEnd = 0;
+			// used to include one more bp on both ends to detect CpG sites.
+			if (targetStart != 0) {
+				tmpStart--;
+			}
+			if (targetEnd != refSeq.length() - 1) {
+				tmpEnd++;
 			}
-			int startCpGPos = tmpTargetRefSeq.indexOf("CG") + targetStart - 1;
-			int endCpGPos = tmpTargetRefSeq.lastIndexOf("CG") + targetStart - 1;
+			String tmpTargetRefSeq = refSeq.substring(targetStart + tmpStart, targetEnd + tmpEnd + 1);
+			int startCpGPos = tmpTargetRefSeq.indexOf("CG") + targetStart + tmpStart;
+			int endCpGPos = tmpTargetRefSeq.lastIndexOf("CG") + targetStart + tmpStart;
 			String targetRefSeq = refSeq.substring(targetStart, targetEnd + 1);
 			boolean isStartCpGPartial = (startCpGPos == targetStart - 1);
 			boolean isEndCpGPartial = (endCpGPos == targetEnd);
@@ -196,28 +197,47 @@ public List<ReportSummary> execute(String experimentName,
 		return reportSummaries;
 	}
 
-	private Map<String, Coordinate> getStringCoordinateMap(Constant constant, Map<String, String> referenceSeqs,
-	                                                       Map<String, Coordinate> refCoorMap) {
+	private synchronized Map<String, Coordinate> getStringCoordinateMap(Constant constant, Map<String, String> referenceSeqs,
+	                                                                    Map<String, Coordinate> refCoorMap) throws
+			IOException {
 		Map<String, Coordinate> targetCoorMap = IO.readCoordinates(constant.targetPath, constant.targetFileName);
 		for (String key : refCoorMap.keySet()) {
 			// if no given targetCoor, get position of first CpG and generate DEFAULT_TARGET_LENGTH bp region.
 			if (!targetCoorMap.containsKey(key)) {
 				String refString = referenceSeqs.get(key);
-				int firstPos = refString.indexOf("CG");
-				// no CpG found in ref seq, use ref start and DEFAULT_TARGET_LENGTH.
-				if (firstPos == -1) {
-					targetCoorMap.put(key, new Coordinate(refCoorMap.get(key).getId(), refCoorMap.get(key).getChr(),
-							refCoorMap.get(key).getStrand(), refCoorMap.get(key).getStart(),
-							refCoorMap.get(key).getStart() + DEFAULT_TARGET_LENGTH));
-				} else {
-					// from first CpG to min(ref end, fisrt CpG + DEFAULT_TARGET_LENGTH)
-					int endPos = refCoorMap.get(key).getStart() + firstPos + DEFAULT_TARGET_LENGTH;
-					targetCoorMap.put(key, new Coordinate(refCoorMap.get(key).getId(), refCoorMap.get(key).getChr(),
-							refCoorMap.get(key).getStrand(), refCoorMap.get(key).getStart() + firstPos,
-							endPos < refCoorMap.get(key).getEnd() ? endPos : refCoorMap.get(key).getEnd()));
+				String strand = refCoorMap.get(key).getStrand();
+				if (strand.equals("+")) {
+					int firstPos = refString.indexOf("CG");
+					if (firstPos == -1) {
+						throw new RuntimeException("no CG found in reference!");
+					} else {
+						// from first CpG to min(ref end, fisrt CpG + DEFAULT_TARGET_LENGTH)
+						int startPos = refCoorMap.get(key).getStart() + firstPos;
+						int endPos = refCoorMap.get(key).getStart() + firstPos + DEFAULT_TARGET_LENGTH - 1;
+						targetCoorMap.put(key,
+								new Coordinate(refCoorMap.get(key).getId(), refCoorMap.get(key).getChr(), strand,
+										startPos,
+										endPos < refCoorMap.get(key).getEnd() ? endPos : refCoorMap.get(key).getEnd()));
+					}
+				} else if (strand.equals("-")) {
+					int firstPos = refString.lastIndexOf("CG") + 2;
+					if (firstPos == -1) {
+						throw new RuntimeException("no CG found in reference!");
+					} else {
+						int startPos = refCoorMap.get(key).getEnd() - firstPos + 1;
+						int endPos = startPos + DEFAULT_TARGET_LENGTH - 1;
+						targetCoorMap.put(key,
+								new Coordinate(refCoorMap.get(key).getId(), refCoorMap.get(key).getChr(), strand,
+										startPos,
+										endPos < refCoorMap.get(key).getEnd() ? endPos : refCoorMap.get(key).getEnd()));
+					}
 				}
 			}
 		}
+		if (constant.getTargetFileName() == null) {
+			constant.targetFileName = "defaultTarget.coor";
+			IO.writeCoordinates(constant.targetPath + constant.targetFileName, targetCoorMap);
+		}
 		return targetCoorMap;
 	}
 
@@ -527,7 +547,6 @@ private List<Pattern> getMethylPattern(List<Sequence> allMethylSequences,
 	private int[][] calculateMismatchStat(String targetRefSeq, int targetStart, int targetEnd,
 	                                      List<Sequence> targetSequencesList) {
 		int[][] mismatchStat = new int[targetRefSeq.length()][6]; // 6 possible values.
-		// TODO double check and refactor
 		for (Sequence seq : targetSequencesList) {
 			char[] seqArray = seq.getOriginalSeq().toCharArray();
 			Arrays.fill(seqArray, '-');
diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java
index f58c52d..a2e5ef9 100644
--- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java
+++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java
@@ -166,12 +166,12 @@ public void drawPattern(PatternLink patternLink) throws IOException {
 			statList = updatedStatList;
 		}
 
+		String coordinate = String.format("chr%s:%d-%d (%s strand)", chr, beginCoor, endCoor, strand);
 		int height = FIGURE_STARTY;
-		int left = FIGURE_STARTX + cellLine.length() * CELLLINE_CHAR_LENGTH;
+		int left = FIGURE_STARTX + (int) (cellLine.length() * CELLLINE_CHAR_LENGTH / 2 * 1.3);
 
-		int imageWidth = targetLength * BPWIDTH + left + (Integer.toString(beginCoor).length() + Integer.toString(
-				endCoor)
-				.length() + chr.length()) * 15;
+		int imageWidth = left + ((targetLength * BPWIDTH + 13 * 20) > coordinate.length() * COMMON_FONT_SIZE / 2 ? targetLength * BPWIDTH + 13 * 20 : coordinate
+				.length() * COMMON_FONT_SIZE / 2);
 		int imageHeight = FIGURE_STARTY + 180 + patternResultLists.size() * HEIGHT_INTERVAL;
 
 		FigureWriter methylWriter = new FigureWriter(patternResultPath, figureFormat, region,
@@ -250,11 +250,23 @@ public void drawASMPattern(ReportSummary reportSummary, PatternResult patternWit
 		String strand = data.getCoordinate().getStrand();
 		int beginCoor = data.getCoordinate().getStart();
 		int endCoor = data.getCoordinate().getEnd();
+		String coordinate = String.format("chr%s:%d-%d (%s strand)", chr, beginCoor, endCoor, strand);
 		List<CpGStatistics> statList = data.getStatList();
 
+		if (strand.equals("-")) {
+			patternWithAllele.getCpGList()
+					.forEach(cpgPattern -> cpgPattern.setPosition(refLength - cpgPattern.getPosition() - 2));
+			patternWithoutAllele.getCpGList()
+					.forEach(cpgPattern -> cpgPattern.setPosition(refLength - cpgPattern.getPosition() - 2));
+			for (int i = 0; i < patternWithAllele.getAlleleList().size(); i++) {
+				patternWithAllele.getAlleleList().set(i, refLength - patternWithAllele.getAlleleList().get(i) - 2);
+			}
+		}
+
 		int height = FIGURE_STARTY;
-		int left = FIGURE_STARTX + cellLine.length() * CELLLINE_CHAR_LENGTH;
-		int imageWidth = refLength * BPWIDTH + left + 240;
+		int left = FIGURE_STARTX + (int) (cellLine.length() * CELLLINE_CHAR_LENGTH / 2 * 1.3);
+		int imageWidth = left + ((refLength * BPWIDTH + 13 * 20) > coordinate.length() * COMMON_FONT_SIZE / 2 ? refLength * BPWIDTH + 13 * 20 : coordinate
+				.length() * COMMON_FONT_SIZE / 2);
 		int imageHeight = FIGURE_STARTY + 180 + 10 * HEIGHT_INTERVAL;
 
 		FigureWriter ASMWriter = new FigureWriter(patternResultPath, figureFormat, region, "ASM", imageWidth,
@@ -286,6 +298,7 @@ public void drawASMPattern(ReportSummary reportSummary, PatternResult patternWit
 						endCoor, strand, beginCoor - 1, beginCoor - 1));
 		addAverage(ASMWriter.getGraphWriter(), figure_font, patternWithoutAllele.getCpGList(), chr, beginCoor,
 				"PatternA", ASMWriter.getBedWriter(), height, left);
+		ASMWriter.getGraphWriter().setFont(new Font(figure_font, Font.PLAIN, COMMON_FONT_SIZE));
 		addAllele(patternWithoutAllele, ASMWriter.getGraphWriter(), ASMWriter.getBedWriter(), chr, beginCoor,
 				height + HEIGHT_INTERVAL, left);
 		height += HEIGHT_INTERVAL * 1.5;
@@ -303,13 +316,25 @@ public void drawASMPattern(ReportSummary reportSummary, PatternResult patternWit
 		height += 2 * HEIGHT_INTERVAL;
 		addAverage(ASMWriter.getGraphWriter(), figure_font, patternWithAllele.getCpGList(), chr, beginCoor, "PatternB",
 				ASMWriter.getBedWriter(), height, left);
+		ASMWriter.getGraphWriter().setFont(new Font(figure_font, Font.PLAIN, COMMON_FONT_SIZE));
 		addAllele(patternWithAllele, ASMWriter.getGraphWriter(), ASMWriter.getBedWriter(), chr, beginCoor,
 				height + HEIGHT_INTERVAL, left);
 		// set snp info
 		if (patternWithAllele.hasAllele()) {
-			String ASMSNPrsId = retrieveSNP(chr, convertCoordinates(chr, coordinateMap.get(region).getStart(), "hg38",
-					patternResultPath, logPath) +
-					patternWithAllele.getAlleleList().get(0));
+			long snpQueryPos;
+			switch (strand) {
+				case "+":
+					snpQueryPos = convertCoordinates(chr, coordinateMap.get(region).getStart(), "hg38",
+							patternResultPath, logPath) + patternWithAllele.getAlleleList().get(0);
+					break;
+				case "-":
+					snpQueryPos = convertCoordinates(chr, coordinateMap.get(region).getEnd(), "hg38",
+							patternResultPath, logPath) - patternWithAllele.getAlleleList().get(0);
+					break;
+				default:
+					throw new RuntimeException("invalid strand:" + strand);
+			}
+			String ASMSNPrsId = retrieveSNP(chr, snpQueryPos);
 			if (ASMSNPrsId != null) {
 				reportSummary.setASMSNPrsId(ASMSNPrsId);
 			}
diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java
index e38b9c0..9635c13 100644
--- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java
+++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java
@@ -5,22 +5,15 @@
 import edu.cwru.cbc.BSPAT.DataType.MappingSummary;
 
 import javax.servlet.http.Part;
-import java.io.BufferedReader;
-import java.io.File;
-import java.io.FileReader;
-import java.io.IOException;
+import java.io.*;
 import java.util.ArrayList;
 import java.util.HashMap;
 import java.util.List;
+import java.util.Map;
 
 public class IO {
 	/**
 	 * read coordinates file
-	 *
-	 * @param coorPath
-	 * @param coorFileName
-	 * @return coordinateHash
-	 * @throws IOException
 	 */
 	public static HashMap<String, Coordinate> readCoordinates(String coorPath, String coorFileName) {
 		/**
@@ -45,8 +38,9 @@ public static HashMap<String, Coordinate> readCoordinates(String coorPath, Strin
 						throw new RuntimeException(
 								"invalid coordinate file! Please double check your uploaded coordinate file");
 					}
-					coordinateHash.put(items[0], new Coordinate(items[0], items[1], items[2], Integer.valueOf(items[3]),
-							Integer.valueOf(items[4])));
+					coordinateHash.put(items[0],
+							new Coordinate(items[0], items[1], items[2], Integer.parseInt(items[3]),
+									Integer.parseInt(items[4])));
 				}
 				line = coordinatesBuffReader.readLine();
 			}
@@ -57,6 +51,18 @@ public static HashMap<String, Coordinate> readCoordinates(String coorPath, Strin
 		return coordinateHash;
 	}
 
+	public static void writeCoordinates(String outFileName, Map<String, Coordinate> coorHashMap) throws
+			IOException {
+		try (BufferedWriter writer = new BufferedWriter(new FileWriter(outFileName))) {
+			for (String key : coorHashMap.keySet()) {
+				Coordinate coor = coorHashMap.get(key);
+				writer.write(
+						String.format("%s\t%s\t%s\t%s\t%s\n", key, coor.getChr(), coor.getStrand(), coor.getStart(),
+								coor.getEnd()));
+			}
+		}
+	}
+
 	public static void createFolder(String path) {
 		File folder = new File(path);
 		if (!folder.isDirectory()) {
diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java
index 6cc58f9..346901a 100644
--- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java
+++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java
@@ -35,6 +35,7 @@ private void readStatFile(String ID) throws IOException {
 			if (line == null) {
 				throw new RuntimeException("analysis report is empty!");
 			}
+			int targetLength = Integer.parseInt(line.split("\t")[1]);
 			// skip 6 lines
 			for (int i = 0; i < 9; i++) {
 				statBuffReader.readLine();
@@ -47,8 +48,12 @@ private void readStatFile(String ID) throws IOException {
 					break;
 				}
 				// start from target start. 0-based.
-				CpGStatistics cpgStat = new CpGStatistics(Integer.valueOf(items[0]) - targetStart);
-				cpgStat.setMethylLevel(Double.valueOf(items[1]));
+				int pos = Integer.parseInt(items[0]) - targetStart;
+				if (coordinate.getStrand().equals("-")) {
+					pos = targetLength - pos - 2;
+				}
+				CpGStatistics cpgStat = new CpGStatistics(pos);
+				cpgStat.setMethylLevel(Double.parseDouble(items[1]));
 				statList.add(cpgStat);
 				line = statBuffReader.readLine();
 			}
@@ -74,33 +79,42 @@ public List<PatternResult> readPatternFile(String region, String patternType) th
 
 			while (line != null) {
 				items = line.split("\t");
+				String patternString = items[0];
+				if (coordinate.getStrand().equals("-")) {
+					patternString = new StringBuilder(items[0]).reverse().toString();
+				}
 				patternResult = new PatternResult();
 				for (int i = 0; i < regionLength; i++) {
 					CpGSitePattern cpg;
-					if (items[0].charAt(i) == '*') {
+					if (patternString.charAt(i) == '*') {
 						cpg = new CpGSitePattern(i, false);
-						if (i + 1 < regionLength && items[0].charAt(i + 1) == '*') {
+						if (i + 1 < regionLength && patternString.charAt(i + 1) == '*') {
 							i++;
 						} else if (i == 0) {
 							cpg = new CpGSitePattern(i - 1, false);
+						} else if (patternString.charAt(i - 1) != '-') {
+							cpg = new CpGSitePattern(i - 1, false);
 						}
 						patternResult.addCpG(cpg);
-					} else if (items[0].charAt(i) == '@') {
+					} else if (patternString.charAt(i) == '@') {
 						cpg = new CpGSitePattern(i, true);
-						if (i + 1 < regionLength && items[0].charAt(i + 1) == '@') {
+						if (i + 1 < regionLength && patternString.charAt(i + 1) == '@') {
 							i++;
 						} else if (i == 0) {
 							cpg = new CpGSitePattern(i - 1, true);
+						} else if (patternString.charAt(i - 1) != '-') {
+							cpg = new CpGSitePattern(i - 1, false);
 						}
 						patternResult.addCpG(cpg);
-					} else if (items[0].charAt(i) == 'A' || items[0].charAt(i) == 'C' || items[0].charAt(i) == 'G' ||
-							items[0].charAt(i) == 'T') {
+					} else if (patternString.charAt(i) == 'A' || patternString.charAt(i) == 'C' || patternString.charAt(
+							i) == 'G' ||
+							patternString.charAt(i) == 'T') {
 						patternResult.addAllele(i);
 					}
 				}
 				patternResultLists.add(patternResult);
-				patternResult.setCount(Integer.valueOf(items[1]));
-				patternResult.setPercent(Double.valueOf(items[2]));
+				patternResult.setCount(Integer.parseInt(items[1]));
+				patternResult.setPercent(Double.parseDouble(items[2]));
 				line = patternBuffReader.readLine();
 			}
 		}
diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/Utilities.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/Utilities.java
index 7a22867..0279fee 100644
--- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/Utilities.java
+++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/Utilities.java
@@ -102,6 +102,7 @@ public static List<String> convertPSLtoCoorPair(String path, String outFileName)
 			throw new RuntimeException(
 					"No matched coordinate found by Blat for given reference file. Please double check your reference file");
 		}
+		IO.writeCoordinates(path + outFileName, coorHashMap);
 		return warnings;
 	}
 
diff --git a/BSPAT/test/edu/cwru/cbc/BSPAT/IntegrationTest.java b/BSPAT/test/edu/cwru/cbc/BSPAT/IntegrationTest.java
index 835fe73..3ac4136 100644
--- a/BSPAT/test/edu/cwru/cbc/BSPAT/IntegrationTest.java
+++ b/BSPAT/test/edu/cwru/cbc/BSPAT/IntegrationTest.java
@@ -128,13 +128,13 @@ private void testAnalysis(String jobID) throws ServletException {
 
 		verify(request, Mockito.times(1)).getRequestDispatcher("analysisResult.jsp");
 
-		assertEquals("Sequence number cover target region", 1042,
+		assertEquals("Sequence number cover target region", 1316,
 				myAnswer.resultConstant.seqCountSummary.getSeqTargetBounded());
-		assertEquals("Sequence number after filtering", 1010,
+		assertEquals("Sequence number after filtering", 1280,
 				myAnswer.resultConstant.seqCountSummary.getSeqTargetAfterFilter());
-		assertEquals("Sequences don't cover whole target but cover all CpGs", 538,
+		assertEquals("Sequences don't cover whole target but cover all CpGs", 264,
 				myAnswer.resultConstant.seqCountSummary.getSeqCpGBounded());
-		assertEquals("CpG bounded Sequence number after filtering", 526,
+		assertEquals("CpG bounded Sequence number after filtering", 256,
 				myAnswer.resultConstant.seqCountSummary.getSeqCpGAfterFilter());
 		assertEquals("Sequences cover neither target nor all CpGs", 6,
 				myAnswer.resultConstant.seqCountSummary.getSeqOthers());
diff --git a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.filtered.txt b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.filtered.txt
index 8727c76..814739c 100644
--- a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.filtered.txt
+++ b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.filtered.txt
@@ -1,4 +1,5 @@
 methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	sequenceIdentity
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:32:14975:14119#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGCAGGTAATTTGT	0.8888888888888888	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:45:8236:15678#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTTT	0.8888888888888888	0.0	0.989010989010989
 ----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:100:17798:18841#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTTTTATTGCGAAGTAGGCAATCTGCTCG	0.6470588235294117	0.75	0.989010989010989
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:102:6429:20030#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTTTG	0.8888888888888888	0.0	0.9891304347826086
@@ -10,6 +11,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:108:11439:20961#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACCTTTTATTGCGAAGTAGGCAATCTGCT	0.6666666666666667	0.6666666666666666	0.978021978021978
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:3:13101:10743#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATCTGTT	0.8888888888888888	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:110:3817:10383#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGTTT	0.8888888888888888	0.5	1.0
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:86:19255:9841#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGC	0.8888888888888888	0.0	0.9782608695652174
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:45:18827:9589#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTCTATTGTGAAGTAGGTGATTTGTTTG	0.8888888888888888	0.0	1.0
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:52:8098:9795#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTCTCATTGTGAAGTAGGTAATTTGTTT	0.8888888888888888	0.0	0.978021978021978
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:107:11427:9924#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTGGGTAATTTGTT	0.8888888888888888	0.0	0.9782608695652174
diff --git a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.txt b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.txt
index 6f486a3..7617a6b 100644
--- a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.txt
+++ b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.txt
@@ -1,15 +1,19 @@
 methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	sequenceIdentity
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:77:15843:7025#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGGTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.978021978021978
 --------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:118:10163:15066#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9893617021276596
 --------------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:116:6513:3332#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT	1.0	0.25	1.0
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:64:6064:6301#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTT	0.9411764705882353	0.0	0.9888888888888889
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:50:3543:3982#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989010989010989
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:88:11663:11929#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:116:15786:14188#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
+--------------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:92:11236:12432#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	1.0	1.0
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:23:18788:10690#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:53:9039:17208#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	0.9444444444444444	0.25	1.0
 --------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:31:8560:8037#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9893617021276596
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:34:9868:11675#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:52:5458:8979#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989247311827957
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:99:17223:20202#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTTC	0.9444444444444444	0.25	0.989010989010989
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:14182:3401#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGCAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:98:15532:4743#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:84:16790:17928#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9782608695652174
 ------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:17:1650:9020#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9891304347826086
@@ -24,17 +28,22 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:81:2126:2067#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTTG	0.9411764705882353	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:77:6882:19754#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTACGAAGTAGGCGATTTGTTT	1.0	0.5	0.989010989010989
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:113:4381:5459#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9789473684210527
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:23:3544:17576#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:112:6312:15491#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTT	0.9444444444444444	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:49:3280:12447#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGTGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:39:6051:10800#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:21:12398:11200#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:62:3955:15584#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9893617021276596
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:48:13283:5382#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:91:14478:9905#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTTG	1.0	0.25	0.9891304347826086
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:94:14114:5795#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989247311827957
 ----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:52:10994:14701#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:108:12552:12456#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:114:1524:5369#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATATGT	1.0	0.6666666666666666	0.9891304347826086
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:99:14837:15848#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989247311827957
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:16:8110:19717#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTCTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	0.9888888888888889
 ----------------------@@---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:35:12011:17252#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.6666666666666666	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:10309:18134#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:27:13188:14342#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	0.9444444444444444	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:102:16057:2332#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:112:17479:5885#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
@@ -42,9 +51,11 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------@@---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:35:4236:2753#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.25	0.9888888888888889
 ------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:107:5368:6505#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:56:13453:19173#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:29:4284:15142#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTGT	0.9444444444444444	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:74:18136:12428#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:110:10124:14725#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTT	0.9411764705882353	0.0	0.9888888888888889
 --------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:91:7483:3209#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	1.0	0.25	1.0
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:10999:18048#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:23:6840:16272#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:59:18254:10338#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989247311827957
 ------------------------**---------------------------------------------------**-------@@-------@	HWUSI-EAS149L_0095_FC:1:57:12398:14558#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTTC	1.0	0.5	1.0
@@ -52,44 +63,59 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:90:9282:21266#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGATGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.978494623655914
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:107:9537:19119#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCTT	0.9444444444444444	0.0	0.978021978021978
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:99:6620:7249#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTATATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.9891304347826086
+-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:71:18108:10304#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:68:17784:10197#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG	1.0	0.0	0.989010989010989
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:35:7916:15828#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:1:17768:19822#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCAATTTGTT	1.0	0.6666666666666666	0.9893617021276596
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:55:15693:4569#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGGTTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTC	1.0	0.6666666666666666	0.967032967032967
 ----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:48:9039:18168#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGGAGGCGATTTGTT	1.0	0.6666666666666666	0.9777777777777777
 ------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:16:11867:10603#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTCTTTATTGTGAAGTAGGTAATTTGTTT	0.9444444444444444	0.0	0.9782608695652174
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:48:17585:2858#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989247311827957
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:34:9290:2499#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 --------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:104:5325:11721#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9893617021276596
 -------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:44:8043:14275#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.9893617021276596
 --------------------------**---------------------------------------------------@@-------**-------@@	HWUSI-EAS149L_0095_FC:1:117:4564:13275#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTCG	1.0	0.5	0.9894736842105263
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:87:17487:12523#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGATAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	0.9894736842105263
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:103:9126:5944#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 --------------------------@@---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:85:18603:20747#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.5	0.9789473684210527
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:25:16942:6712#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:15:6344:17401#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9891304347826086
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:32:7807:18666#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9782608695652174
 -------------------------**------------------------------------------------------------@@-------@	HWUSI-EAS149L_0095_FC:1:3:3926:1960#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGAGAAGTAGGCGATTTGTTC	0.9473684210526316	0.6666666666666666	0.9893617021276596
+----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:12:4425:10017#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:111:12785:8648#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	0.9444444444444444	0.5	1.0
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:64:13719:6381#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
+--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:82:19792:14707#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	0.989247311827957
+----------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:59:11197:14029#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTACGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT	0.9411764705882353	0.3333333333333333	0.9775280898876404
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:31:18528:8852#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:44:16473:19066#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:100:5200:10879#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
+-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:53:12802:19448#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9888888888888889
 --------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:12:7760:2089#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGGAGGCGATTTGTTT	0.9444444444444444	0.5	0.9893617021276596
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:21:7388:10782#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:25:6921:1178#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989247311827957
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:102:6924:18007#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:40:13258:19735#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:100:16412:11948#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	0.9444444444444444	0.0	0.989247311827957
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:83:7133:6964#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNTGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9777777777777777
 ----------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:14:12889:20037#0/1	AATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:92:4196:16829#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9893617021276596
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:83:11888:14848#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.978021978021978
 ----------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:14:7232:3562#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTT	1.0	0.25	0.9888888888888889
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:107:6621:2198#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:31:7080:12250#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGGTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	0.9787234042553191
 ----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:79:19152:14336#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTTT	0.9411764705882353	0.0	0.9888888888888889
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:19:11388:19464#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9893617021276596
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:5:17159:6730#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTCATTGCGAAGTAGGCGATTTGTTC	0.9411764705882353	0.75	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:106:9708:2226#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
+--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:39:13143:15426#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:50:1310:9879#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:119:11804:13266#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 -----------------------@@---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:13:1516:20049#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.5	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:102:6228:10337#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.9891304347826086
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:85:17498:15821#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.9888888888888889
 -----------------------@@---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:111:8517:12412#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.25	0.989010989010989
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:103:2628:10191#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:62:5734:6699#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGTTTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9777777777777777
 ----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:1:3421:8774#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:22:11293:1481#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
@@ -98,22 +124,32 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:70:5730:17725#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:9:16907:8644#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
 ------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:61:10279:6054#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGCTC	0.9444444444444444	0.75	0.9891304347826086
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:102:5313:18932#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT	1.0	0.0	1.0
 ------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:5:3085:18998#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:92:4039:5825#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.9893617021276596
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:27:2732:17318#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9888888888888889
 ------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:51:4585:10580#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTT	0.9444444444444444	0.0	0.9891304347826086
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:34:10051:2459#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:102:6454:8479#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:40:10856:18594#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9893617021276596
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:67:9458:5615#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:85:16848:3379#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	0.9893617021276596
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:77:3732:14626#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:101:6623:14752#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:44:14560:3192#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9891304347826086
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:102:11220:1600#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT	0.9444444444444444	0.0	0.978494623655914
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:93:9706:8567#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATCGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.978494623655914
+------------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:64:9015:5464#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989010989010989
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:15:7540:17757#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTCGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.978494623655914
+-----------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:39:4650:10479#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	1.0	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:54:4965:8189#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGGAGTAGGTAATTTGT	1.0	0.0	0.978494623655914
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:120:2881:8152#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTTT	0.9444444444444444	0.5	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:43:13447:1806#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:82:10039:4336#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9789473684210527
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:59:4720:3310#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
 ----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:61:8545:16950#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 ----------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:90:18813:12713#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.989010989010989
+--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:66:2125:10585#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:46:14736:4396#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9894736842105263
 -----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:90:2874:15379#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 ----------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:70:2592:1500#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTTCG	0.9411764705882353	0.25	0.989010989010989
@@ -123,12 +159,15 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:40:8611:16197#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.978021978021978
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:25:12563:16716#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGCTTG	0.9444444444444444	0.5	1.0
 ------------------------@@---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:70:12612:3362#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTT	1.0	0.5	0.9891304347826086
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:25:13778:17411#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATCGCGAAGCAGGCGATTTGT	0.9444444444444444	0.6666666666666666	0.989010989010989
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:58:12435:12677#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:91:8849:8265#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:21:13519:11772#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 -------------------------**---------------------------------------------------**-------@@-------@	HWUSI-EAS149L_0095_FC:1:26:9943:12912#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGGGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGTTC	0.9444444444444444	0.5	0.989247311827957
 --------------------------**---------------------------------------------------@@-------**-------@	HWUSI-EAS149L_0095_FC:1:109:3432:9586#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTC	0.9444444444444444	0.5	1.0
 --------------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:69:9410:8065#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAACTTGTTT	0.9444444444444444	0.25	0.9893617021276596
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:51:4164:14098#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989247311827957
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:92:11327:11493#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT	0.9411764705882353	0.0	0.9887640449438202
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:106:7276:11159#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------@@-------*	HWUSI-EAS149L_0095_FC:1:66:11418:7696#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTTT	1.0	0.25	0.989010989010989
 ------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:94:6925:11821#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9891304347826086
@@ -136,17 +175,23 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:92:6924:11221#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:88:19722:3591#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCTTG	0.9444444444444444	0.0	0.989247311827957
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:20:5553:11948#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:5:15737:20008#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.978494623655914
 -----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:16:12993:10414#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTGTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.978021978021978
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:5:6704:5793#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9775280898876404
 ----------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:116:15956:4732#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:101:15088:2959#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTCTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	0.9894736842105263
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:12:17583:1833#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	1.0
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:88:13953:13083#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+--------------------------@@---------------------------------------------------**-------@@------	HWUSI-EAS149L_0095_FC:1:30:5197:5711#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGT	1.0	0.6666666666666666	0.989247311827957
+----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:101:9016:4251#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGT	0.9411764705882353	0.3333333333333333	1.0
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:33:11901:2396#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:82:3041:2170#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.9789473684210527
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:84:2500:14136#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:23:8119:5446#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGGTT	0.9444444444444444	0.5	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:85:17732:14091#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.978021978021978
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:84:18394:12081#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.989247311827957
 -------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:30:9371:13789#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	0.9444444444444444	0.0	0.9893617021276596
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:45:15091:4983#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:94:11186:17000#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:120:7792:14002#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -------------------------@@---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:113:3486:16026#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.25	0.989247311827957
@@ -156,10 +201,12 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:19:6116:16506#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:52:5694:13346#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9888888888888889
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:65:11104:18884#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:27:14240:16451#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
 ------------------------**---------------------------------------------------**-------@@-------*	HWUSI-EAS149L_0095_FC:1:19:19717:18232#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGACTTGTTT	0.9444444444444444	0.25	1.0
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:82:18090:17810#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.989010989010989
 -------------------------**---------------------------------------------------**-------@@-------	HWUSI-EAS149L_0095_FC:1:63:9973:16478#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTT	1.0	0.3333333333333333	0.978494623655914
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:84:5500:7681#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:86:9386:5659#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.978021978021978
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:91:11393:2881#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG	1.0	0.0	1.0
 ----------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:13:15126:8131#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
 -------------------------**---------------------------------------------------**-------@@-------	HWUSI-EAS149L_0095_FC:1:20:10053:7014#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGCTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTT	1.0	0.3333333333333333	0.989247311827957
@@ -173,7 +220,9 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:94:12939:19620#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:64:15632:1870#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:71:5502:2228#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.989010989010989
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:44:4202:7452#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:111:14249:10509#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTT	0.9444444444444444	0.5	1.0
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:3:12922:5118#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
 ------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:84:12044:6359#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:39:18392:9057#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTCTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:5:7040:17423#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.978021978021978
@@ -184,23 +233,29 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:13:13655:14338#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGCGATTTGTTCG	0.9411764705882353	0.75	1.0
 --------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:107:7813:3462#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTCTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9787234042553191
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:99:15350:20472#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+----------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:4:18175:20380#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATCTGT	0.9411764705882353	1.0	0.9887640449438202
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:119:14231:4902#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:28:15527:2892#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:82:1925:5422#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTAATTTTTATTGCGAAGCAGGCGATTTGT	0.9411764705882353	0.6666666666666666	0.9775280898876404
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:43:7034:13767#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:111:3742:7841#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989247311827957
 --------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:54:11618:11257#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	0.9444444444444444	0.25	0.9893617021276596
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:40:2999:11441#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGGTTTGTTTG	1.0	0.5	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:9:18755:18704#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9893617021276596
 --------------------------@@---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:2:15790:11791#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.25	0.9787234042553191
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:61:13323:20465#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGTGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	0.9894736842105263
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:14:11753:5243#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAACTTGT	0.9444444444444444	0.0	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:53:15819:10255#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:46:12910:7602#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT	1.0	0.25	1.0
 ----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:50:6284:15511#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:70:3228:15885#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
 -------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:2:11563:4180#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 -----------------------@@---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:83:9753:13233#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	0.9444444444444444	0.5	0.978021978021978
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:56:10809:9049#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTTT	0.9411764705882353	0.5	1.0
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:50:15021:9805#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGTGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	0.9787234042553191
 --------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:88:14959:20003#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:107:13187:18513#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9891304347826086
+--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:28:5771:16612#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.989247311827957
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:112:6478:19954#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:8:14427:17272#0/1	GAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 --------------------------@@---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:25:15960:2022#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9893617021276596
@@ -210,6 +265,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:53:17499:9298#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989247311827957
 ----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:13:17165:17709#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGCTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9777777777777777
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:107:19094:11274#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.989247311827957
+-----------------------@@---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:113:9028:13236#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.6666666666666666	0.9888888888888889
 --------------------------@@---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:52:12442:18539#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	1.0	1.0
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:38:17125:8917#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTT	1.0	0.0	1.0
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:44:18234:9205#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.989247311827957
@@ -220,12 +276,19 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:113:16595:14136#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	1.0	0.25	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------**-------@@	HWUSI-EAS149L_0095_FC:1:19:4022:11896#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTCG	1.0	0.5	0.989247311827957
 ----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:67:9242:3190#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
+-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:63:6489:5999#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGCGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:16:14938:1949#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTNTTTATTGCGAAGCAGGCGATTTGTTTG	0.9444444444444444	0.5	0.9894736842105263
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:79:4216:15468#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTCTGAAGTAGGTAATTTGTT	1.0	0.0	0.9782608695652174
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:56:9413:14341#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
+-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:109:2145:2574#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	0.9444444444444444	0.3333333333333333	1.0
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:43:16298:11550#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------**-------@	HWUSI-EAS149L_0095_FC:1:79:12871:20232#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTC	1.0	0.5	0.9891304347826086
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:44:19095:13268#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:14:12443:14734#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
 ----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:53:7775:6334#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:6:6320:9556#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989010989010989
 -----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:36:6468:12513#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGGGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	0.989010989010989
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:114:13733:11173#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT	0.9411764705882353	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:85:15347:11593#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.9888888888888889
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:28:7475:8171#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGCAGGTAATTTGTT	0.9444444444444444	0.0	0.989010989010989
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:5:17961:10326#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.989247311827957
@@ -237,7 +300,9 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:112:13666:18085#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTCGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.978021978021978
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:91:19012:17701#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:32:5769:16856#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAGGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.978021978021978
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:42:17960:8689#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9891304347826086
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:9:12619:13908#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTTTG	0.9444444444444444	0.0	0.9894736842105263
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:72:1618:18551#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:13:1967:6417#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGATTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.989247311827957
 --------------------------@@---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:111:17328:7398#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.6666666666666666	0.9893617021276596
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:9:3185:15386#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	0.9894736842105263
@@ -247,16 +312,23 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:90:16658:19315#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:115:13696:1814#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989247311827957
 ----------------------@@---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:70:4495:9676#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	0.9411764705882353	0.3333333333333333	0.9888888888888889
+-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:9:4354:18324#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGGAGTAGGTGATATGT	0.9444444444444444	0.3333333333333333	0.9777777777777777
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:61:16104:20243#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGGT	0.9444444444444444	0.6666666666666666	0.9891304347826086
 ------------------------@@---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:54:5927:18218#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGTGGAGAAGGTTTATTTTTTTTTGCGAAGTAGGCGATTTGTTT	1.0	0.75	0.9782608695652174
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:55:11992:13207#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.989010989010989
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:10:17906:8553#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:111:14889:9140#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	1.0
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:38:6357:9946#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT	1.0	0.0	1.0
 --------------------------@@---------------------------------------------------@@-------**-------@	HWUSI-EAS149L_0095_FC:1:23:18719:15486#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGTGATTTGTTC	0.9444444444444444	0.75	1.0
 --------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:114:17505:6886#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9893617021276596
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:31:5478:14639#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:69:4798:7601#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
+--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:61:5516:2993#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.989247311827957
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:94:10892:7222#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:19:11249:1874#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	1.0
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:58:14717:7603#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9893617021276596
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:120:13618:9629#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:59:4111:2084#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
 -------------------------@@---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:47:11562:11584#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:58:11612:19627#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	1.0	0.25	1.0
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:90:14214:10122#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
@@ -269,6 +341,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:17:2103:11114#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTTG	0.9444444444444444	0.0	0.9894736842105263
 -----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:35:10789:18569#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTC	0.9444444444444444	0.75	1.0
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:119:6346:14961#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
+------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:91:4374:15473#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.978021978021978
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:103:3795:3240#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:29:14804:5990#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989247311827957
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:95:7313:16321#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	1.0
@@ -281,12 +354,15 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:103:5164:13563#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	1.0
 ----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:114:15155:17906#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:6:14985:3997#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTCATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	0.989247311827957
+----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:37:17848:8896#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9887640449438202
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:108:7851:15709#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:85:10445:1329#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.9888888888888889
 --------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:49:17701:20488#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	0.9787234042553191
 ----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:115:19601:4276#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9777777777777777
+------------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:29:13001:19024#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGT	0.9444444444444444	1.0	1.0
 -------------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:18:7754:20236#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT	1.0	0.25	1.0
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:90:12859:17003#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.989010989010989
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:103:2511:6814#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:16:6262:3651#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTC	0.9411764705882353	0.75	0.9888888888888889
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:50:6541:15325#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:19:8871:6559#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9891304347826086
@@ -296,13 +372,17 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:107:17659:20457#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.989247311827957
 ------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:106:2685:2812#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.978494623655914
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:22:18897:12772#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:53:9228:6974#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTGTTTTTTATTGCGAAGTAGGTGGTTTGT	1.0	0.3333333333333333	0.978494623655914
 -------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:38:15952:5794#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTTTG	0.9444444444444444	0.0	0.9893617021276596
 ------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:56:9108:9769#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9891304347826086
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:72:2425:6509#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGGAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9782608695652174
 ------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:115:10651:13041#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGTTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:106:19752:14847#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:20:4212:17390#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
 -------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:94:3257:7340#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:33:5776:9400#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATCTGTT	0.9444444444444444	0.0	1.0
 -----------------------**---------------------------------------------------@@-------**-------@	HWUSI-EAS149L_0095_FC:1:23:7510:12488#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTC	1.0	0.5	0.989010989010989
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:118:14160:4917#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:42:13444:9357#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.9891304347826086
 -------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:29:16442:16813#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:119:7949:4251#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
@@ -311,6 +391,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:93:5160:17395#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTTTG	0.9444444444444444	0.0	0.978494623655914
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:53:9340:9905#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:59:15566:20958#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:31:13230:11014#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:39:17539:11038#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGTAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	0.9894736842105263
 -----------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:49:14462:19519#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
 -----------------------------------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:2:9047:16847#0/1	ATATTTTTAATGAGGGAGGAGGTTAGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTCATTTGTT	1.0	0.0	0.978494623655914
@@ -319,11 +400,14 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:72:3655:14965#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTACTTTTTATTGCGAAGTAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:38:12828:5706#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:100:5448:1789#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9777777777777777
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:105:12196:15923#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:21:15175:2955#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:51:7737:10019#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989247311827957
 --------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:27:3682:14219#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	0.9893617021276596
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:67:5741:17197#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 -----------------------@@---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:106:2569:2009#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTT	0.9444444444444444	0.25	0.989010989010989
 --------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:11:9886:11287#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGGGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9787234042553191
+------------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:2:18641:11188#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.3333333333333333	0.978021978021978
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:72:11324:11120#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9894736842105263
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:90:9750:11542#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCT	0.9444444444444444	0.0	0.9891304347826086
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:113:3251:11964#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGAATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.978494623655914
@@ -333,28 +417,37 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:119:16585:16052#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTC	0.9444444444444444	0.25	0.989010989010989
 ------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:33:15712:16498#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
 -----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:107:2911:2621#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTTCG	0.9444444444444444	0.75	1.0
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:6:16152:3252#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
 --------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:111:13164:3213#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:8:6105:7585#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATCTGTTT	0.9411764705882353	0.5	1.0
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:102:1375:14472#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989247311827957
 --------------------------**---------------------------------------------------@@-------**-------@@	HWUSI-EAS149L_0095_FC:1:103:8312:5333#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTCG	1.0	0.5	1.0
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:22:19584:14824#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9411764705882353	0.0	0.9887640449438202
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:112:14054:12476#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:104:17850:5243#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989010989010989
 -------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:71:11152:3132#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9893617021276596
 -------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:40:14731:16181#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:50:9385:7170#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGGTTTGT	1.0	0.6666666666666666	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:31:10306:2199#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:119:15514:10453#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9782608695652174
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:3:15025:3872#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	1.0
+----------------------**---------------------------------------------------**---------------	HWUSI-EAS149L_0095_FC:1:116:8272:13490#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGAAATTTGT	1.0	0.0	0.9777777777777777
+----------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:29:19279:7711#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9887640449438202
 --------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:58:6975:17154#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:31:14331:21228#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:97:13666:13471#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.989010989010989
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:54:8251:3089#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:31:13888:4551#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG	1.0	0.0	1.0
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:30:15386:1114#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTCATTTGTTTG	1.0	0.0	0.9894736842105263
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:22:10539:21301#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:42:9056:6124#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 --------------------------@@---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:47:3456:5888#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCT	0.9444444444444444	0.3333333333333333	0.9787234042553191
 ------------------------@@---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:90:13396:13441#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	1.0	0.5	1.0
 -------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:119:12066:16144#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGACGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	0.9893617021276596
 ----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:80:12921:12995#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:5:13645:18270#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.978494623655914
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:116:18879:15094#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:57:7044:1075#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:70:9058:1995#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9891304347826086
 -------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:66:18509:15120#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	1.0
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:101:8657:6838#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	1.0
@@ -362,6 +455,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------@@---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:110:13834:16506#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9777777777777777
 ------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:110:1524:13706#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:69:6315:13539#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:120:12153:2594#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
 ----------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:52:13664:17037#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:115:4259:6179#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:32:6441:11392#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	1.0
@@ -371,13 +465,18 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:69:12194:6802#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:21:6037:12663#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9893617021276596
 ------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:62:14612:2841#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.989247311827957
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:89:17998:9449#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGC	0.9444444444444444	0.0	0.989010989010989
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:27:13433:7049#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:16:3862:2747#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTCTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	0.9893617021276596
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:33:12753:11382#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@----------------**	HWUSI-EAS149L_0095_FC:1:1:3305:4686#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGGCATTTGTTTG	1.0	0.3333333333333333	0.9787234042553191
 ----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:29:8477:13177#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9888888888888889
 ------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:31:17149:10996#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:107:9389:7926#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTATT	0.9444444444444444	0.6666666666666666	0.989010989010989
 ----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:94:2665:19800#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9777777777777777
 --------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:76:9862:10159#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTCG	0.9444444444444444	0.25	0.9894736842105263
+--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:111:11199:8776#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989247311827957
+-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:64:3406:8819#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9891304347826086
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:19:4192:10756#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9893617021276596
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:15:3380:5778#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 ----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:5:14682:16114#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9411764705882353	0.5	0.989010989010989
@@ -399,60 +498,86 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 --------------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:111:16956:12364#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGCTT	0.9444444444444444	0.25	1.0
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:64:18699:11442#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989010989010989
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:47:15426:3950#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:91:2889:7279#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 --------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:85:16489:20693#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.9894736842105263
 --------------------------@@---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:38:3414:16222#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9893617021276596
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:49:3663:10350#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATCTGTTC	0.9444444444444444	0.25	1.0
 -----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:119:5747:19584#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:73:9072:18632#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:50:12130:2345#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 -----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:61:3543:20032#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 -----------------------**---------------------------------------------------@@-------**-------@@	HWUSI-EAS149L_0095_FC:1:40:18130:17162#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTCG	1.0	0.5	0.9891304347826086
 -------------------------@@---------------------------------------------------**-------@@-------	HWUSI-EAS149L_0095_FC:1:120:7709:20949#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:113:3071:19281#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9893617021276596
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:2:12991:6734#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
 -----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:63:5420:6533#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 ------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:95:2063:19150#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	1.0
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:38:13297:17612#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTT	0.9411764705882353	0.0	0.9888888888888889
 ------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:21:1888:8890#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
 ----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:105:9111:15026#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9888888888888889
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:49:15646:10176#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+-----------------------@@---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:18:9720:20109#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.6666666666666666	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:52:10104:16958#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:39:5608:10049#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -------------------------@@---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:1:17458:13141#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAACGTTTATTTTTTATTGTGAAGTAGGTTATTTGTTTG	1.0	0.25	0.9787234042553191
 -------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:26:2209:19040#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:23:7460:15072#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 -----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:120:5180:5177#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 --------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:43:7396:16925#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 ----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:30:7231:6525#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9888888888888889
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:52:17444:5169#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGGAGTAGGTAATTTGTTTG	1.0	0.0	0.9789473684210527
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:36:5399:2910#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGCTTG	0.9444444444444444	0.5	1.0
+-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:46:4452:17142#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
 ----------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:16:17379:14991#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:40:11457:3917#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:47:2522:10751#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGGAGGAGGCGATTTGT	1.0	0.6666666666666666	0.9662921348314607
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:117:14054:9820#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	0.9891304347826086
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:79:18653:14901#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTACGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.989010989010989
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:33:19020:3875#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
+-----------------------**---------------------------------------------------**-------@@------	HWUSI-EAS149L_0095_FC:1:111:1779:3962#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT	0.9444444444444444	0.3333333333333333	1.0
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:33:4188:18202#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:28:10967:19498#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.9891304347826086
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:93:11029:16359#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTTTG	0.9411764705882353	0.0	0.989010989010989
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:80:19322:12804#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT	1.0	0.0	1.0
 ----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:48:18854:18813#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGCT	0.9411764705882353	0.3333333333333333	0.9888888888888889
+-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:67:15937:14264#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATCTGT	0.9444444444444444	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------@@-------**-------@	HWUSI-EAS149L_0095_FC:1:61:7030:12215#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTC	1.0	0.5	0.9893617021276596
 --------------------------@@---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:85:12586:16821#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9893617021276596
 ------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:9:17478:4682#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9891304347826086
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:27:2071:8097#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:97:2317:4178#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:101:17935:11346#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 ----------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:18:2403:16530#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGCTT	0.9411764705882353	0.25	1.0
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:19:5022:20573#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:83:7794:16714#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNTGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTTT	0.9444444444444444	0.5	0.978494623655914
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:6457:3262#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:92:8096:1489#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
+--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:17:11652:4598#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCAATTTGT	1.0	0.6666666666666666	0.989247311827957
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:71:3960:4319#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:16:16481:3935#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTGTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9782608695652174
 --------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:6:16457:13742#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.9894736842105263
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:84:6547:11792#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGATGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.9888888888888889
 ----------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:21:11836:12058#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT	1.0	0.25	1.0
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:66:7005:16340#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:62:5433:14061#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	1.0
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:27:16313:13260#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.9891304347826086
 --------------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:93:10287:20060#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
 --------------------------@@---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:63:9851:6144#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATCTGTTT	0.9444444444444444	0.75	1.0
+----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:67:9082:11058#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:36:13890:14059#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT	0.9411764705882353	0.6666666666666666	0.9887640449438202
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:79:5201:2073#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	1.0
 --------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:54:3133:4712#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9893617021276596
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:117:5337:19361#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.989010989010989
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:109:12003:4813#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989010989010989
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:51:10894:10721#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTTC	0.9411764705882353	0.75	1.0
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:52:16848:1117#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
 --------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:61:6258:16105#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTC	0.9444444444444444	0.75	1.0
 -------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:51:9210:17279#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTTG	0.9444444444444444	0.0	0.9893617021276596
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:83:1846:2116#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9888888888888889
 ------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:82:12251:13902#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTTG	1.0	0.25	0.978494623655914
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:107:12689:3335#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:67:4939:3237#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
+--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:52:5349:8871#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAACTTGT	0.9444444444444444	0.3333333333333333	0.989247311827957
 -------------------------@@---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:102:7976:5346#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.75	1.0
 -------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:50:6292:12085#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9893617021276596
 --------------------------**---------------------------------------------------@@-------**-------@	HWUSI-EAS149L_0095_FC:1:9:19232:11313#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGTTC	0.9444444444444444	0.5	1.0
@@ -463,6 +588,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:89:13949:15582#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG	1.0	0.0	1.0
 ------------------------**---------------------------------------------------**-------@@-------	HWUSI-EAS149L_0095_FC:1:66:13198:3730#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTT	1.0	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------@@----------------	HWUSI-EAS149L_0095_FC:1:27:8882:14394#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGCGAAGGAGGAGATTTGTT	1.0	0.5	0.968421052631579
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:18:13018:3685#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
 -------------------------**---------------------------------------------------@@-------**-------@@	HWUSI-EAS149L_0095_FC:1:1:19700:1397#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTCATTTGTTCG	1.0	0.5	0.9893617021276596
 ------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:95:11758:20077#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	1.0	0.25	1.0
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:120:5345:9252#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
@@ -471,21 +597,26 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:36:10260:9777#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATCGCGAAGTAGGTGATTTGTTTG	1.0	0.25	0.9787234042553191
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:76:11398:13587#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTACGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTTTG	0.9444444444444444	0.0	0.978494623655914
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:80:7474:11931#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9891304347826086
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:10823:9201#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:69:6439:8653#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 -------------------------**---------------------------------------------------**-------@@-------**	HWUSI-EAS149L_0095_FC:1:38:18288:8052#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTTTG	1.0	0.25	1.0
 ------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:13:14984:4205#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	1.0
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:34:1223:11481#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.9891304347826086
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:34:10859:19560#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:82:5943:14912#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.978021978021978
 --------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:36:16668:17926#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGACAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTT	1.0	0.0	0.9893617021276596
+-----------------------**---------------------------------------------------**-------@@------	HWUSI-EAS149L_0095_FC:1:94:14634:6875#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT	0.9444444444444444	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:112:1958:7414#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:76:12490:9670#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGACGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.989010989010989
 --------------------------@@---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:106:10305:14184#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTTG	1.0	0.5	0.9894736842105263
 ----------------------**---------------------------------------------------@@----------------**	HWUSI-EAS149L_0095_FC:1:57:4795:19503#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGATTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGGGATTTGTTTG	1.0	0.3333333333333333	0.9782608695652174
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:33:16847:14881#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9894736842105263
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:20:7392:9880#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:34:11217:11624#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:39:8355:2852#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989010989010989
 ----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:50:4205:7323#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:34:18567:11507#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.989247311827957
+-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:116:15058:9492#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGGTTTGT	1.0	0.3333333333333333	0.9888888888888889
 --------------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:80:7991:7229#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:106:12097:13856#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.9893617021276596
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:80:11273:10873#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	1.0
@@ -494,6 +625,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:103:16764:8490#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989010989010989
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:92:19311:19515#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9888888888888889
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:2:19209:12239#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.989247311827957
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:4:9107:19260#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGTTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9777777777777777
 --------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:75:5744:4950#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	1.0	0.25	1.0
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:52:9021:6412#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 ----------------------------------------------------------------------------**-------@@-------@	HWUSI-EAS149L_0095_FC:1:77:5343:14698#0/1	TATTTTTAATGAGGGAGGAGGTTAGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTTC	1.0	0.6666666666666666	0.9782608695652174
@@ -502,5 +634,8 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 --------------------------**---------------------------------------------------**-------@@-------**	HWUSI-EAS149L_0095_FC:1:23:3163:2799#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTTTG	1.0	0.25	0.9894736842105263
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:90:8752:16528#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9894736842105263
 ----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:31:9697:8933#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTT	1.0	0.0	1.0
+----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:103:19349:6942#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
+------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:70:12921:5624#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989010989010989
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:25:3221:7590#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:42:6875:13793#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:120:16758:12213#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
diff --git a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.filtered.txt b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.filtered.txt
index 4cdf7f4..1c47ecc 100644
--- a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.filtered.txt
+++ b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.filtered.txt
@@ -1,7 +1,5 @@
 methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	sequenceIdentity
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:32:14975:14119#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGCAGGTAATTTGT	0.8888888888888888	0.0	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:73:9326:13034#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGTGATTTG	0.8823529411764706	0.3333333333333333	1.0
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:86:19255:9841#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGC	0.8888888888888888	0.0	0.9782608695652174
 ------------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:39:15226:14145#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATCTG	0.8823529411764706	1.0	1.0
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:35:3892:16175#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTG	0.8823529411764706	0.0	0.9775280898876404
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:113:4122:14966#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTG	0.8823529411764706	0.0	0.9888888888888889
diff --git a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.txt b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.txt
index 7cee45a..221d5e1 100644
--- a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.txt
+++ b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.txt
@@ -2,192 +2,93 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:41:18716:16092#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9886363636363636
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:50:10679:2420#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTG	0.9411764705882353	0.0	0.9891304347826086
 ----------------------**---------------------------------------------------@@--------------	HWUSI-EAS149L_0095_FC:1:1:5263:7689#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGGTATTTG	1.0	0.5	0.9775280898876404
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:77:15843:7025#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGGTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.978021978021978
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:110:13124:3050#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTG	0.9411764705882353	0.0	0.9891304347826086
---------------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:92:11236:12432#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	1.0	1.0
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:23:18788:10690#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9891304347826086
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:50:17539:10710#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
 ----------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:73:3668:9734#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATCTG	0.9375	1.0	1.0
 -----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:104:13024:10013#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9887640449438202
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:14182:3401#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGCAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:23:3544:17576#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:68:7798:14690#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:21:12398:11200#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:48:13283:5382#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:5:4717:10585#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9886363636363636
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:59:6673:8547#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:1:10244:15506#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9775280898876404
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:114:1524:5369#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATATGT	1.0	0.6666666666666666	0.9891304347826086
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:10309:18134#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 -----------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:66:16117:19233#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGCGAAGTAGGCGATCTG	0.9411764705882353	1.0	0.9887640449438202
-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:29:4284:15142#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTGT	0.9444444444444444	0.3333333333333333	1.0
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:106:9329:13047#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:10999:18048#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:26:5432:2528#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTG	0.9411764705882353	0.6666666666666666	1.0
------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:71:18108:10304#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:35:7916:15828#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:37:17637:8223#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9888888888888889
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:85:12165:18439#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9888888888888889
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:34:9290:2499#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:21:15777:12532#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.989010989010989
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:57:8890:17286#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:103:9126:5944#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 ----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:13:5299:19969#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTG	0.9375	0.3333333333333333	1.0
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:15:6344:17401#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:22:5350:6147#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:12:4425:10017#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:64:13719:6381#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
---------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:82:19792:14707#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	0.989247311827957
-----------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:59:11197:14029#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTACGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT	0.9411764705882353	0.3333333333333333	0.9775280898876404
 --------------------------**---------------------------------------------------@@--------------	HWUSI-EAS149L_0095_FC:1:4:3721:8929#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTCTTATTGCGAAGTAGGGGATTTG	0.9444444444444444	0.5	0.978494623655914
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:100:5200:10879#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:53:12802:19448#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9888888888888889
 -----------------------**---------------------------------------------------**-------@@-----	HWUSI-EAS149L_0095_FC:1:69:19606:14436#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTG	1.0	0.3333333333333333	0.9887640449438202
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:83:7133:6964#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNTGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9777777777777777
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:59:12278:2294#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9887640449438202
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:6:3665:7171#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9887640449438202
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:107:6621:2198#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:106:15461:2802#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9886363636363636
 -------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:62:10244:20413#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.989010989010989
---------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:39:13143:15426#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:31:12358:15175#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9886363636363636
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:106:15084:11883#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:103:2628:10191#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:17:8838:1875#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:102:5313:18932#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT	1.0	0.0	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:34:10051:2459#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------@@-----	HWUSI-EAS149L_0095_FC:1:18:6066:10447#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTG	1.0	0.3333333333333333	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:77:3732:14626#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:102:11220:1600#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT	0.9444444444444444	0.0	0.978494623655914
 ------------------------**---------------------------------------------------**-------@@-----	HWUSI-EAS149L_0095_FC:1:22:11589:7115#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTG	1.0	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:89:4923:19956#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9891304347826086
-------------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:64:9015:5464#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989010989010989
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:80:17517:14963#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:39:4650:10479#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	1.0	1.0
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:54:4965:8189#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGGAGTAGGTAATTTGT	1.0	0.0	0.978494623655914
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:43:13447:1806#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:59:4720:3310#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
---------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:66:2125:10585#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:4:9785:14963#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9772727272727273
 --------------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:106:6179:11721#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	1.0	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:25:13778:17411#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATCGCGAAGCAGGCGATTTGT	0.9444444444444444	0.6666666666666666	0.989010989010989
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:58:12435:12677#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:45:12653:3333#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9782608695652174
 ------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:76:5187:19457#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTGTGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	0.9888888888888889
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:92:11327:11493#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT	0.9411764705882353	0.0	0.9887640449438202
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:86:4883:9283#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGATAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9772727272727273
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:5:15737:20008#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.978494623655914
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:79:4491:3136#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTACGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9782608695652174
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:91:8644:7694#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:5:6704:5793#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9775280898876404
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:69:11702:15456#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTG	0.9411764705882353	0.6666666666666666	1.0
---------------------------@@---------------------------------------------------**-------@@------	HWUSI-EAS149L_0095_FC:1:30:5197:5711#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGT	1.0	0.6666666666666666	0.989247311827957
-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:101:9016:4251#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGT	0.9411764705882353	0.3333333333333333	1.0
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:33:11901:2396#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:102:8585:12687#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:45:15091:4983#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:115:11692:8909#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG	0.9411764705882353	0.0	0.9887640449438202
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:33:9514:5682#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:27:14240:16451#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:86:9386:5659#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.978021978021978
 --------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:108:7526:15001#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:90:6730:7759#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9888888888888889
 -------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:79:6994:20980#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTATGAAGTAGGTAATTTG	1.0	0.0	0.978021978021978
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:44:4202:7452#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9891304347826086
 ----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:88:10315:19653#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9772727272727273
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:3:12922:5118#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
 -------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:51:18994:19283#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTG	0.9411764705882353	0.0	0.989010989010989
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:43:11257:5282#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9888888888888889
-----------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:4:18175:20380#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATCTGT	0.9411764705882353	1.0	0.9887640449438202
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:82:1925:5422#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTAATTTTTATTGCGAAGCAGGCGATTTGT	0.9411764705882353	0.6666666666666666	0.9775280898876404
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:43:7034:13767#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:118:18342:9854#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTATGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9777777777777777
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:14:11753:5243#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAACTTGT	0.9444444444444444	0.0	0.9888888888888889
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:70:3228:15885#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:113:15880:14296#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAGGTAGGCGATTTG	1.0	0.6666666666666666	0.9887640449438202
---------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:28:5771:16612#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.989247311827957
 -----------------------@@---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:34:3569:3441#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9887640449438202
 -------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:111:8817:8723#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.989010989010989
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:18:18887:6369#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
------------------------@@---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:113:9028:13236#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.6666666666666666	0.9888888888888889
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:31:15406:19134#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATCGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9782608695652174
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:19:15114:7938#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTG	0.9411764705882353	0.6666666666666666	1.0
--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:63:6489:5999#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGCGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	0.9891304347826086
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:56:9413:14341#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:109:2145:2574#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	0.9444444444444444	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:99:16079:18603#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTG	0.9411764705882353	0.6666666666666666	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:43:16298:11550#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:44:19095:13268#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:6:6320:9556#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989010989010989
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:114:13733:11173#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT	0.9411764705882353	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:120:19429:11309#0/1	ATATTTTTAATGAGGGAGGAGGTTTGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9777777777777777
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:16:18887:5717#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTNTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9782608695652174
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:65:16528:3052#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9887640449438202
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:42:17960:8689#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9891304347826086
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:72:1618:18551#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:107:9214:10845#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:107:16130:14905#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:6:17971:16051#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9891304347826086
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:56:10923:1862#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTG	0.9411764705882353	0.0	0.9891304347826086
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:1:19017:11869#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9886363636363636
 ------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:84:2010:19781#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGGAGGTGATTTG	1.0	0.3333333333333333	0.9888888888888889
------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:9:4354:18324#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGGAGTAGGTGATATGT	0.9444444444444444	0.3333333333333333	0.9777777777777777
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:10:17906:8553#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:38:6357:9946#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT	1.0	0.0	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:31:5478:14639#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:69:4798:7601#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
---------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:61:5516:2993#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.989247311827957
 ------------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:94:10019:10450#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	1.0	1.0
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:59:4111:2084#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
 ----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:102:10740:17228#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
 ------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:109:9459:16055#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATCTG	0.9411764705882353	0.3333333333333333	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:57:19080:15132#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:91:4374:15473#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.978021978021978
 ----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:56:3519:17256#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:37:17848:8896#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9887640449438202
 -----------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:101:18225:15779#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAGGTAGGCGATTTG	1.0	1.0	0.9775280898876404
 ----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:68:5903:3079#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
-------------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:29:13001:19024#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGT	0.9444444444444444	1.0	1.0
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:103:2511:6814#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:6:5807:9140#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9888888888888889
 -----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:22:10197:14474#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	0.9887640449438202
---------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:53:9228:6974#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTGTTTTTTATTGCGAAGTAGGTGGTTTGT	1.0	0.3333333333333333	0.978494623655914
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:72:2425:6509#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGGAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9782608695652174
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:20:4212:17390#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:118:14160:4917#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:85:18363:8381#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9888888888888889
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:31:13230:11014#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:84:8516:17952#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:117:12302:14767#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.989010989010989
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:105:12196:15923#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:67:5741:17197#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
-------------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:2:18641:11188#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.3333333333333333	0.978021978021978
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:39:8702:20480#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
 -------------------------@@---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:29:18868:4640#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.989010989010989
 -----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:62:2336:12324#0/1	TATTTTTAATGAGGGAGGAGGTTTGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	0.9887640449438202
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:53:18192:11474#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTAATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9886363636363636
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:6:16152:3252#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:106:19493:14466#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTG	1.0	0.0	1.0
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:22:19584:14824#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9411764705882353	0.0	0.9887640449438202
 ------------------------@@---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:18:7583:13173#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9888888888888889
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:106:13786:9519#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9886363636363636
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:50:9385:7170#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGGTTTGT	1.0	0.6666666666666666	0.9891304347826086
-----------------------**---------------------------------------------------**---------------	HWUSI-EAS149L_0095_FC:1:116:8272:13490#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGAAATTTGT	1.0	0.0	0.9777777777777777
-----------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:29:19279:7711#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9887640449438202
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:70:11874:5641#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:54:8251:3089#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:22:10539:21301#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:61:5219:13579#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:116:18879:15094#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:57:7044:1075#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:43:15250:21194#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9891304347826086
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:120:12153:2594#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:103:10383:13152#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9888888888888889
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:89:17998:9449#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGC	0.9444444444444444	0.0	0.989010989010989
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:27:13433:7049#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:33:12753:11382#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
---------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:111:11199:8776#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989247311827957
--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:64:3406:8819#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9891304347826086
 -------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:14:4697:7599#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTAATTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.978021978021978
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:35:15806:4243#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGATAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.989010989010989
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:32:7493:6543#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9777777777777777
@@ -196,69 +97,33 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:15:13384:4055#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9886363636363636
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:101:8182:7471#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9888888888888889
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:38:8898:12120#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG	0.9375	0.0	0.9886363636363636
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:91:2889:7279#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:108:2511:9867#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:50:12130:2345#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:49:7094:18917#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9772727272727273
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:2:12991:6734#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
------------------------@@---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:18:9720:20109#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.6666666666666666	0.9888888888888889
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:23:7460:15072#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:26:15173:1410#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9777777777777777
--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:46:4452:17142#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
 -------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:116:5324:7064#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.989010989010989
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:40:11457:3917#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:77:18168:16979#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGGTTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9886363636363636
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:47:2522:10751#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGGAGGAGGCGATTTGT	1.0	0.6666666666666666	0.9662921348314607
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:33:19020:3875#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------**-------@@------	HWUSI-EAS149L_0095_FC:1:111:1779:3962#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT	0.9444444444444444	0.3333333333333333	1.0
 -----------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:33:11136:11732#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGCTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	1.0	0.9775280898876404
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:56:5480:13168#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTG	1.0	0.0	1.0
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:80:19322:12804#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT	1.0	0.0	1.0
--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:67:15937:14264#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATCTGT	0.9444444444444444	0.3333333333333333	1.0
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:32:9249:2282#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9887640449438202
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:27:2071:8097#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:54:18704:4246#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG	0.9411764705882353	0.0	0.989010989010989
 ----------------------@@---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:58:5257:4508#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTG	0.9375	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:35:6003:5011#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:19:5022:20573#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 -----------------------@@---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:58:13494:10638#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9887640449438202
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:26:15138:1886#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTG	0.9375	0.6666666666666666	0.9886363636363636
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:3:13447:10439#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:6457:3262#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:92:8096:1489#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
---------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:17:11652:4598#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCAATTTGT	1.0	0.6666666666666666	0.989247311827957
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:21:7848:13698#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9891304347826086
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:71:3960:4319#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:35:11029:16456#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9888888888888889
 ------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:114:12170:10992#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9888888888888889
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:66:7005:16340#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:98:9949:10066#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9782608695652174
-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:67:9082:11058#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:36:13890:14059#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT	0.9411764705882353	0.6666666666666666	0.9887640449438202
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:52:16848:1117#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:83:1846:2116#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9888888888888889
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:107:12689:3335#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:67:4939:3237#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
---------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:52:5349:8871#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAACTTGT	0.9444444444444444	0.3333333333333333	0.989247311827957
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:109:13940:20846#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	0.9411764705882353	0.0	0.9887640449438202
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:50:3987:12525#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9891304347826086
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:18:13018:3685#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:37:19558:18369#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCTGGTAATTTG	0.9411764705882353	0.3333333333333333	0.9782608695652174
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:10823:9201#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:69:6439:8653#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 --------------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:40:17857:19275#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	1.0	1.0
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:66:3990:11032#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTG	0.9411764705882353	0.0	0.9887640449438202
 --------------------------**---------------------------------------------------**-------@@-----	HWUSI-EAS149L_0095_FC:1:56:9665:10172#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTG	0.9411764705882353	0.3333333333333333	1.0
------------------------**---------------------------------------------------**-------@@------	HWUSI-EAS149L_0095_FC:1:94:14634:6875#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT	0.9444444444444444	0.3333333333333333	1.0
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:34:11217:11624#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:116:15058:9492#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGGTTTGT	1.0	0.3333333333333333	0.9888888888888889
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:33:13042:3193#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9888888888888889
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:4:9107:19260#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGTTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9777777777777777
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:35:10464:4522#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGACAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.989010989010989
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:58:4104:15536#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9887640449438202
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:111:4850:20696#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG	0.9411764705882353	0.0	0.9888888888888889
-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:103:19349:6942#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:70:12921:5624#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989010989010989
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:25:3221:7590#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 -----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:34:3615:18454#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
 -------------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:118:17634:13195#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	1.0	1.0
diff --git a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_MethylationWithSNP.txt b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_MethylationWithSNP.txt
index 6b3a9c6..a0d8415 100644
--- a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_MethylationWithSNP.txt
+++ b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_MethylationWithSNP.txt
@@ -1,4 +1,4 @@
 MethylationWithSNP	count	percentage	MethylParent
-CGAGGATGGCTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTCCCACTGCGAAGCAGGCGACCTGCT	ref
-**---------------------------------------------------**-------*A-------	174	0.344554	0
-**---------------------------------------------------@@-------@@-------	189	0.374257	1
+CGAGGATGGCTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTCCCACTGCGAAGCAGGCGACCTGC	ref
+**---------------------------------------------------**-------*A------	221	0.345313	0
+**---------------------------------------------------@@-------@@------	237	0.370313	1
diff --git a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_report.txt b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_report.txt
index eed16ca..2d084e9 100644
--- a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_report.txt
+++ b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_report.txt
@@ -1,11 +1,11 @@
 target region start position:	31
-target region length:	71
+target region length:	70
 Bisulfite conversion rate threshold:	0.9
 Sequence identity threshold:	0.9
-A. Sequences cover whole target region:	521
-A. After quality control:	505
-B. Sequences don't cover whole target but cover all CpGs:	269
-B. After quality control:	263
+A. Sequences cover whole target region:	658
+A. After quality control:	640
+B. Sequences don't cover whole target but cover all CpGs:	132
+B. After quality control:	128
 C. Sequences cover neither target nor all CpGs:	3
 methylation rate for each CpG site:
 pos	rate
@@ -83,4 +83,3 @@ mismatch stat:
 68	ref:T	A:0	C:0	G:0	T:0	N:0	total:     0	coverage:768
 69	ref:G	A:1	C:0	G:0	T:0	N:0	total:     1	coverage:768
 70	ref:C	A:0	C:0	G:2	T:0	N:0	total:     2	coverage:640
-71	ref:T	A:0	C:2	G:0	T:0	N:0	total:     2	coverage:505
diff --git a/BSPAT/testFiles/experiment1/pics/LOC440034_ASM.bed b/BSPAT/testFiles/experiment1/pics/LOC440034_ASM.bed
index 4ecc84e..40cae3a 100644
--- a/BSPAT/testFiles/experiment1/pics/LOC440034_ASM.bed
+++ b/BSPAT/testFiles/experiment1/pics/LOC440034_ASM.bed
@@ -1,13 +1,13 @@
-browser position chr11:31794641-31794711
+browser position chr11:31794641-31794710
 browser hide all
 track name="PatternA" description="experiment1-LOC440034-ASM" visibility=1 itemRgb="On"
-chr11	31794640	31794711	refbar	0	+	31794640	31794640	0,0,0
-chr11	31794693	31794695	CG-PatternA	251	+	31794693	31794695	255,41,0
-chr11	31794702	31794704	CG-PatternA	212	+	31794702	31794704	255,111,0
-chr11	31794640	31794642	CG-PatternA	20	+	31794640	31794642	37,255,0
+chr11	31794640	31794710	refbar	0	+	31794640	31794640	0,0,0
+chr11	31794693	31794695	CG-PatternA	317	+	31794693	31794695	255,40,0
+chr11	31794702	31794704	CG-PatternA	266	+	31794702	31794704	255,113,0
+chr11	31794640	31794642	CG-PatternA	24	+	31794640	31794642	35,255,0
 track name="PatternB" description="experiment1-LOC440034-ASM" visibility=1 itemRgb="On"
-chr11	31794640	31794711	refbar	0	+	31794640	31794640	0,0,0
-chr11	31794693	31794695	CG-PatternB	35	+	31794693	31794695	77,255,0
-chr11	31794702	31794704	CG-PatternB	5	+	31794702	31794704	11,255,0
-chr11	31794640	31794642	CG-PatternB	24	+	31794640	31794642	53,255,0
+chr11	31794640	31794710	refbar	0	+	31794640	31794640	0,0,0
+chr11	31794693	31794695	CG-PatternB	46	+	31794693	31794695	79,255,0
+chr11	31794702	31794704	CG-PatternB	7	+	31794702	31794704	12,255,0
+chr11	31794640	31794642	CG-PatternB	31	+	31794640	31794642	53,255,0
 chr11	31794703	31794704	SNP-Pattern0	1000	+	31794703	31794704	0,0,255
diff --git a/BSPAT/testFiles/experiment1/pics/LOC440034_ASM.png b/BSPAT/testFiles/experiment1/pics/LOC440034_ASM.png
index d2f4a67..667dfab 100644
Binary files a/BSPAT/testFiles/experiment1/pics/LOC440034_ASM.png and b/BSPAT/testFiles/experiment1/pics/LOC440034_ASM.png differ
diff --git a/BSPAT/testFiles/experiment1/pics/LOC440034_MethylationWithSNP.bed b/BSPAT/testFiles/experiment1/pics/LOC440034_MethylationWithSNP.bed
index 618f1c5..e402ce4 100644
--- a/BSPAT/testFiles/experiment1/pics/LOC440034_MethylationWithSNP.bed
+++ b/BSPAT/testFiles/experiment1/pics/LOC440034_MethylationWithSNP.bed
@@ -1,20 +1,20 @@
-browser position chr11:31794641-31794711
+browser position chr11:31794641-31794710
 browser hide all
 track name="Pattern0" description="experiment1-LOC440034" visibility=1 itemRgb="On"
-chr11	31794640	31794711	refbar	0	+	31794640	31794640	0,0,0
+chr11	31794640	31794710	refbar	0	+	31794640	31794640	0,0,0
 chr11	31794640	31794642	CG-Pattern0	0	+	31794640	31794642	224,224,224
 chr11	31794693	31794695	CG-Pattern0	0	+	31794693	31794695	224,224,224
 chr11	31794702	31794704	CG-Pattern0	0	+	31794702	31794704	224,224,224
 chr11	31794703	31794704	SNP-Pattern0	1000	+	31794703	31794704	0,0,255
 track name="Pattern1" description="experiment1-LOC440034" visibility=1 itemRgb="On"
-chr11	31794640	31794711	refbar	0	+	31794640	31794640	0,0,0
+chr11	31794640	31794710	refbar	0	+	31794640	31794640	0,0,0
 chr11	31794640	31794642	CG-Pattern1	0	+	31794640	31794642	224,224,224
 chr11	31794693	31794695	CG-Pattern1	0	+	31794693	31794695	0,0,0
 chr11	31794702	31794704	CG-Pattern1	0	+	31794702	31794704	0,0,0
-browser position chr11:31794641-31794711
+browser position chr11:31794641-31794710
 browser hide all
 track name="Average" description="experiment1-LOC440034" visibility=1 itemRgb="On"
-chr11	31794640	31794711	refbar	0	+	31794640	31794640	0,0,0
+chr11	31794640	31794710	refbar	0	+	31794640	31794640	0,0,0
 chr11	31794640	31794642	CG-Pattern-Average	0	+	31794640	31794642	45,255,0
 chr11	31794693	31794695	CG-Pattern-Average	0	+	31794693	31794695	255,220,0
 chr11	31794702	31794704	CG-Pattern-Average	0	+	31794702	31794704	216,255,0
diff --git a/BSPAT/testFiles/experiment1/pics/LOC440034_MethylationWithSNP.png b/BSPAT/testFiles/experiment1/pics/LOC440034_MethylationWithSNP.png
index cfeba48..cfcfa8d 100644
Binary files a/BSPAT/testFiles/experiment1/pics/LOC440034_MethylationWithSNP.png and b/BSPAT/testFiles/experiment1/pics/LOC440034_MethylationWithSNP.png differ
diff --git a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.filtered.txt b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.filtered.txt
index 8727c76..814739c 100644
--- a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.filtered.txt
+++ b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.filtered.txt
@@ -1,4 +1,5 @@
 methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	sequenceIdentity
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:32:14975:14119#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGCAGGTAATTTGT	0.8888888888888888	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:45:8236:15678#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTTT	0.8888888888888888	0.0	0.989010989010989
 ----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:100:17798:18841#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTTTTATTGCGAAGTAGGCAATCTGCTCG	0.6470588235294117	0.75	0.989010989010989
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:102:6429:20030#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTTTG	0.8888888888888888	0.0	0.9891304347826086
@@ -10,6 +11,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:108:11439:20961#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACCTTTTATTGCGAAGTAGGCAATCTGCT	0.6666666666666667	0.6666666666666666	0.978021978021978
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:3:13101:10743#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATCTGTT	0.8888888888888888	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:110:3817:10383#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGTTT	0.8888888888888888	0.5	1.0
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:86:19255:9841#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGC	0.8888888888888888	0.0	0.9782608695652174
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:45:18827:9589#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTCTATTGTGAAGTAGGTGATTTGTTTG	0.8888888888888888	0.0	1.0
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:52:8098:9795#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTCTCATTGTGAAGTAGGTAATTTGTTT	0.8888888888888888	0.0	0.978021978021978
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:107:11427:9924#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTGGGTAATTTGTT	0.8888888888888888	0.0	0.9782608695652174
diff --git a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.txt b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.txt
index 6f486a3..7617a6b 100644
--- a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.txt
+++ b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.txt
@@ -1,15 +1,19 @@
 methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	sequenceIdentity
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:77:15843:7025#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGGTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.978021978021978
 --------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:118:10163:15066#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9893617021276596
 --------------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:116:6513:3332#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT	1.0	0.25	1.0
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:64:6064:6301#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTT	0.9411764705882353	0.0	0.9888888888888889
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:50:3543:3982#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989010989010989
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:88:11663:11929#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:116:15786:14188#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
+--------------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:92:11236:12432#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	1.0	1.0
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:23:18788:10690#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:53:9039:17208#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	0.9444444444444444	0.25	1.0
 --------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:31:8560:8037#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9893617021276596
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:34:9868:11675#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:52:5458:8979#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989247311827957
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:99:17223:20202#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTTC	0.9444444444444444	0.25	0.989010989010989
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:14182:3401#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGCAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:98:15532:4743#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:84:16790:17928#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9782608695652174
 ------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:17:1650:9020#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9891304347826086
@@ -24,17 +28,22 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:81:2126:2067#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTTG	0.9411764705882353	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:77:6882:19754#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTACGAAGTAGGCGATTTGTTT	1.0	0.5	0.989010989010989
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:113:4381:5459#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9789473684210527
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:23:3544:17576#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:112:6312:15491#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTT	0.9444444444444444	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:49:3280:12447#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGTGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:39:6051:10800#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:21:12398:11200#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:62:3955:15584#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9893617021276596
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:48:13283:5382#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:91:14478:9905#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTTG	1.0	0.25	0.9891304347826086
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:94:14114:5795#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989247311827957
 ----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:52:10994:14701#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:108:12552:12456#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:114:1524:5369#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATATGT	1.0	0.6666666666666666	0.9891304347826086
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:99:14837:15848#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989247311827957
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:16:8110:19717#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTCTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	0.9888888888888889
 ----------------------@@---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:35:12011:17252#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.6666666666666666	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:10309:18134#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:27:13188:14342#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	0.9444444444444444	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:102:16057:2332#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:112:17479:5885#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
@@ -42,9 +51,11 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------@@---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:35:4236:2753#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.25	0.9888888888888889
 ------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:107:5368:6505#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:56:13453:19173#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:29:4284:15142#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTGT	0.9444444444444444	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:74:18136:12428#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:110:10124:14725#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTT	0.9411764705882353	0.0	0.9888888888888889
 --------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:91:7483:3209#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	1.0	0.25	1.0
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:10999:18048#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:23:6840:16272#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:59:18254:10338#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989247311827957
 ------------------------**---------------------------------------------------**-------@@-------@	HWUSI-EAS149L_0095_FC:1:57:12398:14558#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTTC	1.0	0.5	1.0
@@ -52,44 +63,59 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:90:9282:21266#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGATGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.978494623655914
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:107:9537:19119#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCTT	0.9444444444444444	0.0	0.978021978021978
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:99:6620:7249#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTATATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.9891304347826086
+-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:71:18108:10304#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:68:17784:10197#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG	1.0	0.0	0.989010989010989
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:35:7916:15828#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:1:17768:19822#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCAATTTGTT	1.0	0.6666666666666666	0.9893617021276596
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:55:15693:4569#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGGTTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTC	1.0	0.6666666666666666	0.967032967032967
 ----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:48:9039:18168#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGGAGGCGATTTGTT	1.0	0.6666666666666666	0.9777777777777777
 ------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:16:11867:10603#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTCTTTATTGTGAAGTAGGTAATTTGTTT	0.9444444444444444	0.0	0.9782608695652174
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:48:17585:2858#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989247311827957
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:34:9290:2499#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 --------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:104:5325:11721#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9893617021276596
 -------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:44:8043:14275#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.9893617021276596
 --------------------------**---------------------------------------------------@@-------**-------@@	HWUSI-EAS149L_0095_FC:1:117:4564:13275#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTCG	1.0	0.5	0.9894736842105263
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:87:17487:12523#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGATAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	0.9894736842105263
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:103:9126:5944#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 --------------------------@@---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:85:18603:20747#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.5	0.9789473684210527
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:25:16942:6712#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:15:6344:17401#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9891304347826086
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:32:7807:18666#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9782608695652174
 -------------------------**------------------------------------------------------------@@-------@	HWUSI-EAS149L_0095_FC:1:3:3926:1960#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGAGAAGTAGGCGATTTGTTC	0.9473684210526316	0.6666666666666666	0.9893617021276596
+----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:12:4425:10017#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:111:12785:8648#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	0.9444444444444444	0.5	1.0
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:64:13719:6381#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
+--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:82:19792:14707#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	0.989247311827957
+----------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:59:11197:14029#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTACGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT	0.9411764705882353	0.3333333333333333	0.9775280898876404
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:31:18528:8852#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:44:16473:19066#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:100:5200:10879#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
+-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:53:12802:19448#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9888888888888889
 --------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:12:7760:2089#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGGAGGCGATTTGTTT	0.9444444444444444	0.5	0.9893617021276596
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:21:7388:10782#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:25:6921:1178#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989247311827957
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:102:6924:18007#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:40:13258:19735#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:100:16412:11948#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	0.9444444444444444	0.0	0.989247311827957
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:83:7133:6964#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNTGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9777777777777777
 ----------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:14:12889:20037#0/1	AATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:92:4196:16829#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9893617021276596
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:83:11888:14848#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.978021978021978
 ----------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:14:7232:3562#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTT	1.0	0.25	0.9888888888888889
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:107:6621:2198#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:31:7080:12250#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGGTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	0.9787234042553191
 ----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:79:19152:14336#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTTT	0.9411764705882353	0.0	0.9888888888888889
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:19:11388:19464#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9893617021276596
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:5:17159:6730#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTCATTGCGAAGTAGGCGATTTGTTC	0.9411764705882353	0.75	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:106:9708:2226#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
+--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:39:13143:15426#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:50:1310:9879#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:119:11804:13266#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 -----------------------@@---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:13:1516:20049#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.5	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:102:6228:10337#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.9891304347826086
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:85:17498:15821#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.9888888888888889
 -----------------------@@---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:111:8517:12412#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.25	0.989010989010989
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:103:2628:10191#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:62:5734:6699#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGTTTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9777777777777777
 ----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:1:3421:8774#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:22:11293:1481#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
@@ -98,22 +124,32 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:70:5730:17725#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:9:16907:8644#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
 ------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:61:10279:6054#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGCTC	0.9444444444444444	0.75	0.9891304347826086
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:102:5313:18932#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT	1.0	0.0	1.0
 ------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:5:3085:18998#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:92:4039:5825#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.9893617021276596
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:27:2732:17318#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9888888888888889
 ------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:51:4585:10580#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTT	0.9444444444444444	0.0	0.9891304347826086
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:34:10051:2459#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:102:6454:8479#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:40:10856:18594#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9893617021276596
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:67:9458:5615#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:85:16848:3379#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	0.9893617021276596
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:77:3732:14626#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:101:6623:14752#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:44:14560:3192#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9891304347826086
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:102:11220:1600#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT	0.9444444444444444	0.0	0.978494623655914
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:93:9706:8567#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATCGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.978494623655914
+------------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:64:9015:5464#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989010989010989
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:15:7540:17757#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTCGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.978494623655914
+-----------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:39:4650:10479#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	1.0	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:54:4965:8189#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGGAGTAGGTAATTTGT	1.0	0.0	0.978494623655914
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:120:2881:8152#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTTT	0.9444444444444444	0.5	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:43:13447:1806#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:82:10039:4336#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9789473684210527
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:59:4720:3310#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
 ----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:61:8545:16950#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 ----------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:90:18813:12713#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.989010989010989
+--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:66:2125:10585#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:46:14736:4396#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9894736842105263
 -----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:90:2874:15379#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 ----------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:70:2592:1500#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTTCG	0.9411764705882353	0.25	0.989010989010989
@@ -123,12 +159,15 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:40:8611:16197#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.978021978021978
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:25:12563:16716#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGCTTG	0.9444444444444444	0.5	1.0
 ------------------------@@---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:70:12612:3362#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTT	1.0	0.5	0.9891304347826086
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:25:13778:17411#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATCGCGAAGCAGGCGATTTGT	0.9444444444444444	0.6666666666666666	0.989010989010989
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:58:12435:12677#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:91:8849:8265#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:21:13519:11772#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 -------------------------**---------------------------------------------------**-------@@-------@	HWUSI-EAS149L_0095_FC:1:26:9943:12912#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGGGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGTTC	0.9444444444444444	0.5	0.989247311827957
 --------------------------**---------------------------------------------------@@-------**-------@	HWUSI-EAS149L_0095_FC:1:109:3432:9586#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTC	0.9444444444444444	0.5	1.0
 --------------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:69:9410:8065#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAACTTGTTT	0.9444444444444444	0.25	0.9893617021276596
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:51:4164:14098#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989247311827957
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:92:11327:11493#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT	0.9411764705882353	0.0	0.9887640449438202
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:106:7276:11159#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------@@-------*	HWUSI-EAS149L_0095_FC:1:66:11418:7696#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTTT	1.0	0.25	0.989010989010989
 ------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:94:6925:11821#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9891304347826086
@@ -136,17 +175,23 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:92:6924:11221#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:88:19722:3591#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCTTG	0.9444444444444444	0.0	0.989247311827957
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:20:5553:11948#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:5:15737:20008#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.978494623655914
 -----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:16:12993:10414#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTGTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.978021978021978
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:5:6704:5793#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9775280898876404
 ----------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:116:15956:4732#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:101:15088:2959#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTCTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	0.9894736842105263
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:12:17583:1833#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	1.0
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:88:13953:13083#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+--------------------------@@---------------------------------------------------**-------@@------	HWUSI-EAS149L_0095_FC:1:30:5197:5711#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGT	1.0	0.6666666666666666	0.989247311827957
+----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:101:9016:4251#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGT	0.9411764705882353	0.3333333333333333	1.0
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:33:11901:2396#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:82:3041:2170#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.9789473684210527
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:84:2500:14136#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:23:8119:5446#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGGTT	0.9444444444444444	0.5	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:85:17732:14091#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.978021978021978
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:84:18394:12081#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.989247311827957
 -------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:30:9371:13789#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	0.9444444444444444	0.0	0.9893617021276596
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:45:15091:4983#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:94:11186:17000#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:120:7792:14002#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -------------------------@@---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:113:3486:16026#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.25	0.989247311827957
@@ -156,10 +201,12 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:19:6116:16506#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:52:5694:13346#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9888888888888889
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:65:11104:18884#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:27:14240:16451#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
 ------------------------**---------------------------------------------------**-------@@-------*	HWUSI-EAS149L_0095_FC:1:19:19717:18232#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGACTTGTTT	0.9444444444444444	0.25	1.0
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:82:18090:17810#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.989010989010989
 -------------------------**---------------------------------------------------**-------@@-------	HWUSI-EAS149L_0095_FC:1:63:9973:16478#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTT	1.0	0.3333333333333333	0.978494623655914
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:84:5500:7681#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:86:9386:5659#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.978021978021978
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:91:11393:2881#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG	1.0	0.0	1.0
 ----------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:13:15126:8131#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
 -------------------------**---------------------------------------------------**-------@@-------	HWUSI-EAS149L_0095_FC:1:20:10053:7014#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGCTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTT	1.0	0.3333333333333333	0.989247311827957
@@ -173,7 +220,9 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:94:12939:19620#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:64:15632:1870#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:71:5502:2228#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.989010989010989
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:44:4202:7452#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:111:14249:10509#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTT	0.9444444444444444	0.5	1.0
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:3:12922:5118#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
 ------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:84:12044:6359#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:39:18392:9057#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTCTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:5:7040:17423#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.978021978021978
@@ -184,23 +233,29 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:13:13655:14338#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGCGATTTGTTCG	0.9411764705882353	0.75	1.0
 --------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:107:7813:3462#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTCTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9787234042553191
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:99:15350:20472#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+----------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:4:18175:20380#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATCTGT	0.9411764705882353	1.0	0.9887640449438202
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:119:14231:4902#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:28:15527:2892#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:82:1925:5422#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTAATTTTTATTGCGAAGCAGGCGATTTGT	0.9411764705882353	0.6666666666666666	0.9775280898876404
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:43:7034:13767#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:111:3742:7841#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989247311827957
 --------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:54:11618:11257#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	0.9444444444444444	0.25	0.9893617021276596
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:40:2999:11441#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGGTTTGTTTG	1.0	0.5	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:9:18755:18704#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9893617021276596
 --------------------------@@---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:2:15790:11791#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.25	0.9787234042553191
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:61:13323:20465#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGTGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	0.9894736842105263
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:14:11753:5243#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAACTTGT	0.9444444444444444	0.0	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:53:15819:10255#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:46:12910:7602#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT	1.0	0.25	1.0
 ----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:50:6284:15511#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:70:3228:15885#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
 -------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:2:11563:4180#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 -----------------------@@---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:83:9753:13233#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	0.9444444444444444	0.5	0.978021978021978
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:56:10809:9049#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTTT	0.9411764705882353	0.5	1.0
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:50:15021:9805#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGTGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	0.9787234042553191
 --------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:88:14959:20003#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:107:13187:18513#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9891304347826086
+--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:28:5771:16612#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.989247311827957
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:112:6478:19954#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:8:14427:17272#0/1	GAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 --------------------------@@---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:25:15960:2022#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9893617021276596
@@ -210,6 +265,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:53:17499:9298#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989247311827957
 ----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:13:17165:17709#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGCTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9777777777777777
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:107:19094:11274#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.989247311827957
+-----------------------@@---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:113:9028:13236#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.6666666666666666	0.9888888888888889
 --------------------------@@---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:52:12442:18539#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	1.0	1.0
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:38:17125:8917#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTT	1.0	0.0	1.0
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:44:18234:9205#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.989247311827957
@@ -220,12 +276,19 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:113:16595:14136#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	1.0	0.25	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------**-------@@	HWUSI-EAS149L_0095_FC:1:19:4022:11896#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTCG	1.0	0.5	0.989247311827957
 ----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:67:9242:3190#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
+-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:63:6489:5999#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGCGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:16:14938:1949#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTNTTTATTGCGAAGCAGGCGATTTGTTTG	0.9444444444444444	0.5	0.9894736842105263
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:79:4216:15468#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTCTGAAGTAGGTAATTTGTT	1.0	0.0	0.9782608695652174
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:56:9413:14341#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
+-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:109:2145:2574#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	0.9444444444444444	0.3333333333333333	1.0
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:43:16298:11550#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------**-------@	HWUSI-EAS149L_0095_FC:1:79:12871:20232#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTC	1.0	0.5	0.9891304347826086
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:44:19095:13268#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:14:12443:14734#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
 ----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:53:7775:6334#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:6:6320:9556#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989010989010989
 -----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:36:6468:12513#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGGGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	0.989010989010989
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:114:13733:11173#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT	0.9411764705882353	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:85:15347:11593#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.9888888888888889
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:28:7475:8171#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGCAGGTAATTTGTT	0.9444444444444444	0.0	0.989010989010989
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:5:17961:10326#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.989247311827957
@@ -237,7 +300,9 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:112:13666:18085#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTCGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.978021978021978
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:91:19012:17701#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:32:5769:16856#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAGGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.978021978021978
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:42:17960:8689#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9891304347826086
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:9:12619:13908#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTTTG	0.9444444444444444	0.0	0.9894736842105263
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:72:1618:18551#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:13:1967:6417#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGATTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.989247311827957
 --------------------------@@---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:111:17328:7398#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.6666666666666666	0.9893617021276596
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:9:3185:15386#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	0.9894736842105263
@@ -247,16 +312,23 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:90:16658:19315#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:115:13696:1814#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989247311827957
 ----------------------@@---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:70:4495:9676#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	0.9411764705882353	0.3333333333333333	0.9888888888888889
+-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:9:4354:18324#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGGAGTAGGTGATATGT	0.9444444444444444	0.3333333333333333	0.9777777777777777
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:61:16104:20243#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGGT	0.9444444444444444	0.6666666666666666	0.9891304347826086
 ------------------------@@---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:54:5927:18218#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGTGGAGAAGGTTTATTTTTTTTTGCGAAGTAGGCGATTTGTTT	1.0	0.75	0.9782608695652174
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:55:11992:13207#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.989010989010989
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:10:17906:8553#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:111:14889:9140#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	1.0
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:38:6357:9946#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT	1.0	0.0	1.0
 --------------------------@@---------------------------------------------------@@-------**-------@	HWUSI-EAS149L_0095_FC:1:23:18719:15486#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGTGATTTGTTC	0.9444444444444444	0.75	1.0
 --------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:114:17505:6886#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9893617021276596
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:31:5478:14639#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:69:4798:7601#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
+--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:61:5516:2993#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.989247311827957
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:94:10892:7222#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:19:11249:1874#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	1.0
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:58:14717:7603#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9893617021276596
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:120:13618:9629#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:59:4111:2084#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
 -------------------------@@---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:47:11562:11584#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:58:11612:19627#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	1.0	0.25	1.0
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:90:14214:10122#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
@@ -269,6 +341,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:17:2103:11114#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTTG	0.9444444444444444	0.0	0.9894736842105263
 -----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:35:10789:18569#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTC	0.9444444444444444	0.75	1.0
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:119:6346:14961#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
+------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:91:4374:15473#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.978021978021978
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:103:3795:3240#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:29:14804:5990#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989247311827957
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:95:7313:16321#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	1.0
@@ -281,12 +354,15 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:103:5164:13563#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	1.0
 ----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:114:15155:17906#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:6:14985:3997#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTCATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	0.989247311827957
+----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:37:17848:8896#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9887640449438202
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:108:7851:15709#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:85:10445:1329#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.9888888888888889
 --------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:49:17701:20488#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	0.9787234042553191
 ----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:115:19601:4276#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9777777777777777
+------------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:29:13001:19024#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGT	0.9444444444444444	1.0	1.0
 -------------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:18:7754:20236#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT	1.0	0.25	1.0
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:90:12859:17003#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.989010989010989
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:103:2511:6814#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:16:6262:3651#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTC	0.9411764705882353	0.75	0.9888888888888889
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:50:6541:15325#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:19:8871:6559#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9891304347826086
@@ -296,13 +372,17 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:107:17659:20457#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.989247311827957
 ------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:106:2685:2812#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.978494623655914
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:22:18897:12772#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:53:9228:6974#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTGTTTTTTATTGCGAAGTAGGTGGTTTGT	1.0	0.3333333333333333	0.978494623655914
 -------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:38:15952:5794#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTTTG	0.9444444444444444	0.0	0.9893617021276596
 ------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:56:9108:9769#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9891304347826086
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:72:2425:6509#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGGAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9782608695652174
 ------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:115:10651:13041#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGTTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:106:19752:14847#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:20:4212:17390#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
 -------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:94:3257:7340#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:33:5776:9400#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATCTGTT	0.9444444444444444	0.0	1.0
 -----------------------**---------------------------------------------------@@-------**-------@	HWUSI-EAS149L_0095_FC:1:23:7510:12488#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTC	1.0	0.5	0.989010989010989
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:118:14160:4917#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:42:13444:9357#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.9891304347826086
 -------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:29:16442:16813#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:119:7949:4251#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
@@ -311,6 +391,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:93:5160:17395#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTTTG	0.9444444444444444	0.0	0.978494623655914
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:53:9340:9905#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:59:15566:20958#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:31:13230:11014#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:39:17539:11038#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGTAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	0.9894736842105263
 -----------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:49:14462:19519#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
 -----------------------------------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:2:9047:16847#0/1	ATATTTTTAATGAGGGAGGAGGTTAGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTCATTTGTT	1.0	0.0	0.978494623655914
@@ -319,11 +400,14 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:72:3655:14965#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTACTTTTTATTGCGAAGTAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:38:12828:5706#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:100:5448:1789#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9777777777777777
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:105:12196:15923#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:21:15175:2955#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:51:7737:10019#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989247311827957
 --------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:27:3682:14219#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	0.9893617021276596
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:67:5741:17197#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 -----------------------@@---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:106:2569:2009#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTT	0.9444444444444444	0.25	0.989010989010989
 --------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:11:9886:11287#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGGGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9787234042553191
+------------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:2:18641:11188#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.3333333333333333	0.978021978021978
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:72:11324:11120#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9894736842105263
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:90:9750:11542#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCT	0.9444444444444444	0.0	0.9891304347826086
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:113:3251:11964#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGAATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.978494623655914
@@ -333,28 +417,37 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:119:16585:16052#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTC	0.9444444444444444	0.25	0.989010989010989
 ------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:33:15712:16498#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
 -----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:107:2911:2621#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTTCG	0.9444444444444444	0.75	1.0
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:6:16152:3252#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
 --------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:111:13164:3213#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:8:6105:7585#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATCTGTTT	0.9411764705882353	0.5	1.0
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:102:1375:14472#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989247311827957
 --------------------------**---------------------------------------------------@@-------**-------@@	HWUSI-EAS149L_0095_FC:1:103:8312:5333#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTCG	1.0	0.5	1.0
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:22:19584:14824#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9411764705882353	0.0	0.9887640449438202
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:112:14054:12476#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:104:17850:5243#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989010989010989
 -------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:71:11152:3132#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9893617021276596
 -------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:40:14731:16181#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
+-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:50:9385:7170#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGGTTTGT	1.0	0.6666666666666666	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:31:10306:2199#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:119:15514:10453#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9782608695652174
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:3:15025:3872#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	1.0
+----------------------**---------------------------------------------------**---------------	HWUSI-EAS149L_0095_FC:1:116:8272:13490#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGAAATTTGT	1.0	0.0	0.9777777777777777
+----------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:29:19279:7711#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9887640449438202
 --------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:58:6975:17154#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:31:14331:21228#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:97:13666:13471#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.989010989010989
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:54:8251:3089#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:31:13888:4551#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG	1.0	0.0	1.0
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:30:15386:1114#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTCATTTGTTTG	1.0	0.0	0.9894736842105263
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:22:10539:21301#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:42:9056:6124#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 --------------------------@@---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:47:3456:5888#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCT	0.9444444444444444	0.3333333333333333	0.9787234042553191
 ------------------------@@---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:90:13396:13441#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	1.0	0.5	1.0
 -------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:119:12066:16144#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGACGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	0.9893617021276596
 ----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:80:12921:12995#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 -------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:5:13645:18270#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.978494623655914
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:116:18879:15094#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:57:7044:1075#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:70:9058:1995#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9891304347826086
 -------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:66:18509:15120#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	1.0
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:101:8657:6838#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	1.0
@@ -362,6 +455,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------@@---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:110:13834:16506#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9777777777777777
 ------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:110:1524:13706#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:69:6315:13539#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:120:12153:2594#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
 ----------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:52:13664:17037#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:115:4259:6179#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:32:6441:11392#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	1.0
@@ -371,13 +465,18 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:69:12194:6802#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:21:6037:12663#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9893617021276596
 ------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:62:14612:2841#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.989247311827957
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:89:17998:9449#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGC	0.9444444444444444	0.0	0.989010989010989
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:27:13433:7049#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:16:3862:2747#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTCTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	0.9893617021276596
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:33:12753:11382#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@----------------**	HWUSI-EAS149L_0095_FC:1:1:3305:4686#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGGCATTTGTTTG	1.0	0.3333333333333333	0.9787234042553191
 ----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:29:8477:13177#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9888888888888889
 ------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:31:17149:10996#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:107:9389:7926#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTATT	0.9444444444444444	0.6666666666666666	0.989010989010989
 ----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:94:2665:19800#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.9777777777777777
 --------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:76:9862:10159#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTCG	0.9444444444444444	0.25	0.9894736842105263
+--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:111:11199:8776#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989247311827957
+-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:64:3406:8819#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9891304347826086
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:19:4192:10756#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9893617021276596
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:15:3380:5778#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 ----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:5:14682:16114#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9411764705882353	0.5	0.989010989010989
@@ -399,60 +498,86 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 --------------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:111:16956:12364#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGCTT	0.9444444444444444	0.25	1.0
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:64:18699:11442#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989010989010989
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:47:15426:3950#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:91:2889:7279#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 --------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:85:16489:20693#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.9894736842105263
 --------------------------@@---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:38:3414:16222#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9893617021276596
 -----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:49:3663:10350#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATCTGTTC	0.9444444444444444	0.25	1.0
 -----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:119:5747:19584#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC	1.0	0.75	1.0
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:73:9072:18632#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.989010989010989
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:50:12130:2345#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 -----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:61:3543:20032#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 -----------------------**---------------------------------------------------@@-------**-------@@	HWUSI-EAS149L_0095_FC:1:40:18130:17162#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTCG	1.0	0.5	0.9891304347826086
 -------------------------@@---------------------------------------------------**-------@@-------	HWUSI-EAS149L_0095_FC:1:120:7709:20949#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:113:3071:19281#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9893617021276596
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:2:12991:6734#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
 -----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:63:5420:6533#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 ------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:95:2063:19150#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	1.0
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:38:13297:17612#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTT	0.9411764705882353	0.0	0.9888888888888889
 ------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:21:1888:8890#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
 ----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:105:9111:15026#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9888888888888889
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:49:15646:10176#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+-----------------------@@---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:18:9720:20109#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.6666666666666666	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:52:10104:16958#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:39:5608:10049#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -------------------------@@---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:1:17458:13141#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAACGTTTATTTTTTATTGTGAAGTAGGTTATTTGTTTG	1.0	0.25	0.9787234042553191
 -------------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:26:2209:19040#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:23:7460:15072#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 -----------------------**---------------------------------------------------@@-------@@-------@@	HWUSI-EAS149L_0095_FC:1:120:5180:5177#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG	1.0	0.75	1.0
 --------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:43:7396:16925#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 ----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:30:7231:6525#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9888888888888889
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:52:17444:5169#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGGAGTAGGTAATTTGTTTG	1.0	0.0	0.9789473684210527
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:36:5399:2910#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGCTTG	0.9444444444444444	0.5	1.0
+-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:46:4452:17142#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
 ----------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:16:17379:14991#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:40:11457:3917#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:47:2522:10751#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGGAGGAGGCGATTTGT	1.0	0.6666666666666666	0.9662921348314607
 ------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:117:14054:9820#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTT	0.9444444444444444	0.6666666666666666	0.9891304347826086
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:79:18653:14901#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTACGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.989010989010989
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:33:19020:3875#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
+-----------------------**---------------------------------------------------**-------@@------	HWUSI-EAS149L_0095_FC:1:111:1779:3962#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT	0.9444444444444444	0.3333333333333333	1.0
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:33:4188:18202#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:28:10967:19498#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.9891304347826086
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:93:11029:16359#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTTTG	0.9411764705882353	0.0	0.989010989010989
+-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:80:19322:12804#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT	1.0	0.0	1.0
 ----------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:48:18854:18813#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGCT	0.9411764705882353	0.3333333333333333	0.9888888888888889
+-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:67:15937:14264#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATCTGT	0.9444444444444444	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------@@-------**-------@	HWUSI-EAS149L_0095_FC:1:61:7030:12215#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTC	1.0	0.5	0.9893617021276596
 --------------------------@@---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:85:12586:16821#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.9893617021276596
 ------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:9:17478:4682#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9891304347826086
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:27:2071:8097#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:97:2317:4178#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:101:17935:11346#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 ----------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:18:2403:16530#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGCTT	0.9411764705882353	0.25	1.0
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:19:5022:20573#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:83:7794:16714#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNTGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTTT	0.9444444444444444	0.5	0.978494623655914
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:6457:3262#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
+------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:92:8096:1489#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
+--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:17:11652:4598#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCAATTTGT	1.0	0.6666666666666666	0.989247311827957
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:71:3960:4319#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:16:16481:3935#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTGTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9782608695652174
 --------------------------**---------------------------------------------------**-------**-------@@	HWUSI-EAS149L_0095_FC:1:6:16457:13742#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG	1.0	0.25	0.9894736842105263
 ----------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:84:6547:11792#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGATGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	0.9888888888888889
 ----------------------**---------------------------------------------------@@-------**-------*	HWUSI-EAS149L_0095_FC:1:21:11836:12058#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT	1.0	0.25	1.0
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:66:7005:16340#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:62:5433:14061#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	1.0
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:27:16313:13260#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.9891304347826086
 --------------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:93:10287:20060#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
 --------------------------@@---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:63:9851:6144#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATCTGTTT	0.9444444444444444	0.75	1.0
+----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:67:9082:11058#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:36:13890:14059#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT	0.9411764705882353	0.6666666666666666	0.9887640449438202
 --------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:79:5201:2073#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	1.0
 --------------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:54:3133:4712#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9893617021276596
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:117:5337:19361#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.989010989010989
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:109:12003:4813#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989010989010989
 ----------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:51:10894:10721#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTTC	0.9411764705882353	0.75	1.0
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:52:16848:1117#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
 --------------------------**---------------------------------------------------@@-------@@-------@	HWUSI-EAS149L_0095_FC:1:61:6258:16105#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTC	0.9444444444444444	0.75	1.0
 -------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:51:9210:17279#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTTG	0.9444444444444444	0.0	0.9893617021276596
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:83:1846:2116#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9888888888888889
 ------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:82:12251:13902#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTTG	1.0	0.25	0.978494623655914
+----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:107:12689:3335#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
+------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:67:4939:3237#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
+--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:52:5349:8871#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAACTTGT	0.9444444444444444	0.3333333333333333	0.989247311827957
 -------------------------@@---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:102:7976:5346#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.75	1.0
 -------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:50:6292:12085#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9893617021276596
 --------------------------**---------------------------------------------------@@-------**-------@	HWUSI-EAS149L_0095_FC:1:9:19232:11313#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGTTC	0.9444444444444444	0.5	1.0
@@ -463,6 +588,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:89:13949:15582#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG	1.0	0.0	1.0
 ------------------------**---------------------------------------------------**-------@@-------	HWUSI-EAS149L_0095_FC:1:66:13198:3730#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTT	1.0	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------@@----------------	HWUSI-EAS149L_0095_FC:1:27:8882:14394#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGCGAAGGAGGAGATTTGTT	1.0	0.5	0.968421052631579
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:18:13018:3685#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
 -------------------------**---------------------------------------------------@@-------**-------@@	HWUSI-EAS149L_0095_FC:1:1:19700:1397#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTCATTTGTTCG	1.0	0.5	0.9893617021276596
 ------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:95:11758:20077#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	1.0	0.25	1.0
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:120:5345:9252#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT	1.0	0.3333333333333333	1.0
@@ -471,21 +597,26 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:36:10260:9777#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATCGCGAAGTAGGTGATTTGTTTG	1.0	0.25	0.9787234042553191
 ------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:76:11398:13587#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTACGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTTTG	0.9444444444444444	0.0	0.978494623655914
 -----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:80:7474:11931#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9891304347826086
+--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:10823:9201#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:69:6439:8653#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 -------------------------**---------------------------------------------------**-------@@-------**	HWUSI-EAS149L_0095_FC:1:38:18288:8052#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTTTG	1.0	0.25	1.0
 ------------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:13:14984:4205#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	0.9444444444444444	0.5	1.0
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:34:1223:11481#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.9891304347826086
 ------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:34:10859:19560#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:82:5943:14912#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT	1.0	0.0	0.978021978021978
 --------------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:36:16668:17926#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGACAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTT	1.0	0.0	0.9893617021276596
+-----------------------**---------------------------------------------------**-------@@------	HWUSI-EAS149L_0095_FC:1:94:14634:6875#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT	0.9444444444444444	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:112:1958:7414#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:76:12490:9670#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGACGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	0.989010989010989
 --------------------------@@---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:106:10305:14184#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTTG	1.0	0.5	0.9894736842105263
 ----------------------**---------------------------------------------------@@----------------**	HWUSI-EAS149L_0095_FC:1:57:4795:19503#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGATTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGGGATTTGTTTG	1.0	0.3333333333333333	0.9782608695652174
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:33:16847:14881#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9894736842105263
 --------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:20:7392:9880#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:34:11217:11624#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 ----------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:39:8355:2852#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.989010989010989
 ----------------------**---------------------------------------------------**-------**-------@	HWUSI-EAS149L_0095_FC:1:50:4205:7323#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC	1.0	0.25	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------**-------	HWUSI-EAS149L_0095_FC:1:34:18567:11507#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT	1.0	0.3333333333333333	0.989247311827957
+-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:116:15058:9492#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGGTTTGT	1.0	0.3333333333333333	0.9888888888888889
 --------------------------@@---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:80:7991:7229#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	1.0	1.0
 --------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:106:12097:13856#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.9893617021276596
 -----------------------**---------------------------------------------------@@-------@@-------**	HWUSI-EAS149L_0095_FC:1:80:11273:10873#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG	1.0	0.5	1.0
@@ -494,6 +625,7 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 -----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:103:16764:8490#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.989010989010989
 ----------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:92:19311:19515#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT	1.0	0.0	0.9888888888888889
 -------------------------**---------------------------------------------------**-------**-------	HWUSI-EAS149L_0095_FC:1:2:19209:12239#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGTGAAGTAGGTAATTTGTT	0.9444444444444444	0.0	0.989247311827957
+-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:4:9107:19260#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGTTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9777777777777777
 --------------------------**---------------------------------------------------@@-------**-------**	HWUSI-EAS149L_0095_FC:1:75:5744:4950#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG	1.0	0.25	1.0
 -------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:52:9021:6412#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
 ----------------------------------------------------------------------------**-------@@-------@	HWUSI-EAS149L_0095_FC:1:77:5343:14698#0/1	TATTTTTAATGAGGGAGGAGGTTAGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTTC	1.0	0.6666666666666666	0.9782608695652174
@@ -502,5 +634,8 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 --------------------------**---------------------------------------------------**-------@@-------**	HWUSI-EAS149L_0095_FC:1:23:3163:2799#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTTTG	1.0	0.25	0.9894736842105263
 --------------------------**---------------------------------------------------**-------**-------**	HWUSI-EAS149L_0095_FC:1:90:8752:16528#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG	1.0	0.0	0.9894736842105263
 ----------------------**---------------------------------------------------**-------**-------*	HWUSI-EAS149L_0095_FC:1:31:9697:8933#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTT	1.0	0.0	1.0
+----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:103:19349:6942#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
+------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:70:12921:5624#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989010989010989
+-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:25:3221:7590#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------@@-------	HWUSI-EAS149L_0095_FC:1:42:6875:13793#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------@@-------*	HWUSI-EAS149L_0095_FC:1:120:16758:12213#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT	1.0	0.5	1.0
diff --git a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.filtered.txt b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.filtered.txt
index 4cdf7f4..1c47ecc 100644
--- a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.filtered.txt
+++ b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.filtered.txt
@@ -1,7 +1,5 @@
 methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	sequenceIdentity
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:32:14975:14119#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGCAGGTAATTTGT	0.8888888888888888	0.0	0.9891304347826086
 ------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:73:9326:13034#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGTGATTTG	0.8823529411764706	0.3333333333333333	1.0
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:86:19255:9841#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGC	0.8888888888888888	0.0	0.9782608695652174
 ------------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:39:15226:14145#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATCTG	0.8823529411764706	1.0	1.0
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:35:3892:16175#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTG	0.8823529411764706	0.0	0.9775280898876404
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:113:4122:14966#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTG	0.8823529411764706	0.0	0.9888888888888889
diff --git a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.txt b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.txt
index 7cee45a..221d5e1 100644
--- a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.txt
+++ b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.txt
@@ -2,192 +2,93 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:41:18716:16092#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9886363636363636
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:50:10679:2420#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTG	0.9411764705882353	0.0	0.9891304347826086
 ----------------------**---------------------------------------------------@@--------------	HWUSI-EAS149L_0095_FC:1:1:5263:7689#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGGTATTTG	1.0	0.5	0.9775280898876404
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:77:15843:7025#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGGTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.978021978021978
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:110:13124:3050#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTG	0.9411764705882353	0.0	0.9891304347826086
---------------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:92:11236:12432#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	1.0	1.0
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:23:18788:10690#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9891304347826086
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:50:17539:10710#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
 ----------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:73:3668:9734#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATCTG	0.9375	1.0	1.0
 -----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:104:13024:10013#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9887640449438202
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:14182:3401#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGCAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:23:3544:17576#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:68:7798:14690#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:21:12398:11200#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:48:13283:5382#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:5:4717:10585#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9886363636363636
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:59:6673:8547#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:1:10244:15506#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9775280898876404
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:114:1524:5369#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATATGT	1.0	0.6666666666666666	0.9891304347826086
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:10309:18134#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 -----------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:66:16117:19233#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGCGAAGTAGGCGATCTG	0.9411764705882353	1.0	0.9887640449438202
-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:29:4284:15142#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTGT	0.9444444444444444	0.3333333333333333	1.0
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:106:9329:13047#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:10999:18048#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:26:5432:2528#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTG	0.9411764705882353	0.6666666666666666	1.0
------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:71:18108:10304#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:35:7916:15828#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:37:17637:8223#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9888888888888889
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:85:12165:18439#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9888888888888889
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:34:9290:2499#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:21:15777:12532#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.989010989010989
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:57:8890:17286#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:103:9126:5944#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 ----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:13:5299:19969#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTG	0.9375	0.3333333333333333	1.0
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:15:6344:17401#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9891304347826086
 --------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:22:5350:6147#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:12:4425:10017#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:64:13719:6381#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
---------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:82:19792:14707#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	0.989247311827957
-----------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:59:11197:14029#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTACGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT	0.9411764705882353	0.3333333333333333	0.9775280898876404
 --------------------------**---------------------------------------------------@@--------------	HWUSI-EAS149L_0095_FC:1:4:3721:8929#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTCTTATTGCGAAGTAGGGGATTTG	0.9444444444444444	0.5	0.978494623655914
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:100:5200:10879#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:53:12802:19448#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9888888888888889
 -----------------------**---------------------------------------------------**-------@@-----	HWUSI-EAS149L_0095_FC:1:69:19606:14436#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTG	1.0	0.3333333333333333	0.9887640449438202
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:83:7133:6964#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNTGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9777777777777777
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:59:12278:2294#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9887640449438202
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:6:3665:7171#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9887640449438202
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:107:6621:2198#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:106:15461:2802#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9886363636363636
 -------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:62:10244:20413#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.989010989010989
---------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:39:13143:15426#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:31:12358:15175#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9886363636363636
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:106:15084:11883#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:103:2628:10191#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:17:8838:1875#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:102:5313:18932#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT	1.0	0.0	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:34:10051:2459#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------@@-----	HWUSI-EAS149L_0095_FC:1:18:6066:10447#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTG	1.0	0.3333333333333333	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:77:3732:14626#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:102:11220:1600#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT	0.9444444444444444	0.0	0.978494623655914
 ------------------------**---------------------------------------------------**-------@@-----	HWUSI-EAS149L_0095_FC:1:22:11589:7115#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTG	1.0	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:89:4923:19956#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9891304347826086
-------------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:64:9015:5464#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989010989010989
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:80:17517:14963#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:39:4650:10479#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	1.0	1.0
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:54:4965:8189#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGGAGTAGGTAATTTGT	1.0	0.0	0.978494623655914
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:43:13447:1806#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:59:4720:3310#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
---------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:66:2125:10585#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:4:9785:14963#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9772727272727273
 --------------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:106:6179:11721#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	1.0	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:25:13778:17411#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATCGCGAAGCAGGCGATTTGT	0.9444444444444444	0.6666666666666666	0.989010989010989
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:58:12435:12677#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:45:12653:3333#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9782608695652174
 ------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:76:5187:19457#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTGTGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	0.9888888888888889
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:92:11327:11493#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT	0.9411764705882353	0.0	0.9887640449438202
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:86:4883:9283#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGATAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9772727272727273
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:5:15737:20008#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.978494623655914
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:79:4491:3136#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTACGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9782608695652174
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:91:8644:7694#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:5:6704:5793#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9775280898876404
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:69:11702:15456#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTG	0.9411764705882353	0.6666666666666666	1.0
---------------------------@@---------------------------------------------------**-------@@------	HWUSI-EAS149L_0095_FC:1:30:5197:5711#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGT	1.0	0.6666666666666666	0.989247311827957
-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:101:9016:4251#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGT	0.9411764705882353	0.3333333333333333	1.0
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:33:11901:2396#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:102:8585:12687#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:45:15091:4983#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:115:11692:8909#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG	0.9411764705882353	0.0	0.9887640449438202
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:33:9514:5682#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:27:14240:16451#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:86:9386:5659#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.978021978021978
 --------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:108:7526:15001#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:90:6730:7759#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9888888888888889
 -------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:79:6994:20980#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTATGAAGTAGGTAATTTG	1.0	0.0	0.978021978021978
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:44:4202:7452#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9891304347826086
 ----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:88:10315:19653#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9772727272727273
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:3:12922:5118#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
 -------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:51:18994:19283#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTG	0.9411764705882353	0.0	0.989010989010989
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:43:11257:5282#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9888888888888889
-----------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:4:18175:20380#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATCTGT	0.9411764705882353	1.0	0.9887640449438202
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:82:1925:5422#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTAATTTTTATTGCGAAGCAGGCGATTTGT	0.9411764705882353	0.6666666666666666	0.9775280898876404
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:43:7034:13767#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:118:18342:9854#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTATGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9777777777777777
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:14:11753:5243#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAACTTGT	0.9444444444444444	0.0	0.9888888888888889
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:70:3228:15885#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:113:15880:14296#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAGGTAGGCGATTTG	1.0	0.6666666666666666	0.9887640449438202
---------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:28:5771:16612#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.989247311827957
 -----------------------@@---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:34:3569:3441#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9887640449438202
 -------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:111:8817:8723#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.989010989010989
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:18:18887:6369#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
------------------------@@---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:113:9028:13236#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.6666666666666666	0.9888888888888889
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:31:15406:19134#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATCGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9782608695652174
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:19:15114:7938#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTG	0.9411764705882353	0.6666666666666666	1.0
--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:63:6489:5999#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGCGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	0.9891304347826086
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:56:9413:14341#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:109:2145:2574#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	0.9444444444444444	0.3333333333333333	1.0
 --------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:99:16079:18603#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTG	0.9411764705882353	0.6666666666666666	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:43:16298:11550#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:44:19095:13268#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:6:6320:9556#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989010989010989
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:114:13733:11173#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT	0.9411764705882353	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:120:19429:11309#0/1	ATATTTTTAATGAGGGAGGAGGTTTGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9777777777777777
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:16:18887:5717#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTNTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9782608695652174
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:65:16528:3052#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9887640449438202
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:42:17960:8689#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9891304347826086
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:72:1618:18551#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:107:9214:10845#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:107:16130:14905#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:6:17971:16051#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9891304347826086
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:56:10923:1862#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTG	0.9411764705882353	0.0	0.9891304347826086
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:1:19017:11869#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9886363636363636
 ------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:84:2010:19781#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGGAGGTGATTTG	1.0	0.3333333333333333	0.9888888888888889
------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:9:4354:18324#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGGAGTAGGTGATATGT	0.9444444444444444	0.3333333333333333	0.9777777777777777
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:10:17906:8553#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:38:6357:9946#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT	1.0	0.0	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:31:5478:14639#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:69:4798:7601#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
---------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:61:5516:2993#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.989247311827957
 ------------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:94:10019:10450#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	1.0	1.0
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:59:4111:2084#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
 ----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:102:10740:17228#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
 ------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:109:9459:16055#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATCTG	0.9411764705882353	0.3333333333333333	0.9888888888888889
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:57:19080:15132#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:91:4374:15473#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.978021978021978
 ----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:56:3519:17256#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:37:17848:8896#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9887640449438202
 -----------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:101:18225:15779#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAGGTAGGCGATTTG	1.0	1.0	0.9775280898876404
 ----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:68:5903:3079#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
-------------------------@@---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:29:13001:19024#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGT	0.9444444444444444	1.0	1.0
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:103:2511:6814#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:6:5807:9140#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9888888888888889
 -----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:22:10197:14474#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	0.9887640449438202
---------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:53:9228:6974#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTGTTTTTTATTGCGAAGTAGGTGGTTTGT	1.0	0.3333333333333333	0.978494623655914
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:72:2425:6509#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGGAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9782608695652174
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:20:4212:17390#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:118:14160:4917#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:85:18363:8381#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9888888888888889
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:31:13230:11014#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9891304347826086
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:84:8516:17952#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:117:12302:14767#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.989010989010989
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:105:12196:15923#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:67:5741:17197#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
-------------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:2:18641:11188#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.3333333333333333	0.978021978021978
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:39:8702:20480#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
 -------------------------@@---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:29:18868:4640#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.989010989010989
 -----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:62:2336:12324#0/1	TATTTTTAATGAGGGAGGAGGTTTGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	0.9887640449438202
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:53:18192:11474#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTAATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9886363636363636
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:6:16152:3252#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:106:19493:14466#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTG	1.0	0.0	1.0
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:22:19584:14824#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9411764705882353	0.0	0.9887640449438202
 ------------------------@@---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:18:7583:13173#0/1	ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9888888888888889
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:106:13786:9519#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9886363636363636
--------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:50:9385:7170#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGGTTTGT	1.0	0.6666666666666666	0.9891304347826086
-----------------------**---------------------------------------------------**---------------	HWUSI-EAS149L_0095_FC:1:116:8272:13490#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGAAATTTGT	1.0	0.0	0.9777777777777777
-----------------------@@---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:29:19279:7711#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9887640449438202
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:70:11874:5641#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:54:8251:3089#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:22:10539:21301#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:61:5219:13579#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:116:18879:15094#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:57:7044:1075#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:43:15250:21194#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9891304347826086
-----------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:120:12153:2594#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9887640449438202
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:103:10383:13152#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9888888888888889
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:89:17998:9449#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGC	0.9444444444444444	0.0	0.989010989010989
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:27:13433:7049#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:33:12753:11382#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
---------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:111:11199:8776#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989247311827957
--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:64:3406:8819#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.9891304347826086
 -------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:14:4697:7599#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTAATTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.978021978021978
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:35:15806:4243#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGATAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.989010989010989
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:32:7493:6543#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9777777777777777
@@ -196,69 +97,33 @@ methylationString	ID	originalSequence	BisulfiteConversionRate	methylationRate	se
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:15:13384:4055#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9886363636363636
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:101:8182:7471#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9888888888888889
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:38:8898:12120#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG	0.9375	0.0	0.9886363636363636
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:91:2889:7279#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:108:2511:9867#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:50:12130:2345#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:49:7094:18917#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9772727272727273
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:2:12991:6734#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
------------------------@@---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:18:9720:20109#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.6666666666666666	0.9888888888888889
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:23:7460:15072#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:26:15173:1410#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9777777777777777
--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:46:4452:17142#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
 -------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:116:5324:7064#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.989010989010989
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:40:11457:3917#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:77:18168:16979#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGGTTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.9886363636363636
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:47:2522:10751#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGGAGGAGGCGATTTGT	1.0	0.6666666666666666	0.9662921348314607
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:33:19020:3875#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------**-------@@------	HWUSI-EAS149L_0095_FC:1:111:1779:3962#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT	0.9444444444444444	0.3333333333333333	1.0
 -----------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:33:11136:11732#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGCTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	1.0	0.9775280898876404
 ----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:56:5480:13168#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTG	1.0	0.0	1.0
--------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:80:19322:12804#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT	1.0	0.0	1.0
--------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:67:15937:14264#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATCTGT	0.9444444444444444	0.3333333333333333	1.0
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:32:9249:2282#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9887640449438202
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:27:2071:8097#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 -------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:54:18704:4246#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG	0.9411764705882353	0.0	0.989010989010989
 ----------------------@@---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:58:5257:4508#0/1	ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTG	0.9375	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:35:6003:5011#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:19:5022:20573#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 -----------------------@@---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:58:13494:10638#0/1	TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9887640449438202
 ----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:26:15138:1886#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTG	0.9375	0.6666666666666666	0.9886363636363636
 -----------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:3:13447:10439#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	1.0
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:6457:3262#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
-------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:92:8096:1489#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989010989010989
---------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:17:11652:4598#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCAATTTGT	1.0	0.6666666666666666	0.989247311827957
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:21:7848:13698#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9891304347826086
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:71:3960:4319#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	0.9444444444444444	0.6666666666666666	1.0
 ------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:35:11029:16456#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9888888888888889
 ------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:114:12170:10992#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9888888888888889
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:66:7005:16340#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
 --------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:98:9949:10066#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9782608695652174
-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:67:9082:11058#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:36:13890:14059#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT	0.9411764705882353	0.6666666666666666	0.9887640449438202
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:52:16848:1117#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.9888888888888889
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:83:1846:2116#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9888888888888889
-----------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:107:12689:3335#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
-------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:67:4939:3237#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	1.0
---------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:52:5349:8871#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAACTTGT	0.9444444444444444	0.3333333333333333	0.989247311827957
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:109:13940:20846#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	0.9411764705882353	0.0	0.9887640449438202
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:50:3987:12525#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG	1.0	0.3333333333333333	0.9891304347826086
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:18:13018:3685#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT	0.9444444444444444	0.0	0.989247311827957
 --------------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:37:19558:18369#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCTGGTAATTTG	0.9411764705882353	0.3333333333333333	0.9782608695652174
---------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:101:10823:9201#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.989247311827957
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:69:6439:8653#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 --------------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:40:17857:19275#0/1	AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	1.0	1.0
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:66:3990:11032#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTG	0.9411764705882353	0.0	0.9887640449438202
 --------------------------**---------------------------------------------------**-------@@-----	HWUSI-EAS149L_0095_FC:1:56:9665:10172#0/1	AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTG	0.9411764705882353	0.3333333333333333	1.0
------------------------**---------------------------------------------------**-------@@------	HWUSI-EAS149L_0095_FC:1:94:14634:6875#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT	0.9444444444444444	0.3333333333333333	1.0
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:34:11217:11624#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:116:15058:9492#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGGTTTGT	1.0	0.3333333333333333	0.9888888888888889
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:33:13042:3193#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9888888888888889
------------------------**---------------------------------------------------@@-------@@------	HWUSI-EAS149L_0095_FC:1:4:9107:19260#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGTTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATTTGT	1.0	0.6666666666666666	0.9777777777777777
 -------------------------**---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:35:10464:4522#0/1	AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGACAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	0.6666666666666666	0.989010989010989
 -----------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:58:4104:15536#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG	1.0	0.0	0.9887640449438202
 ------------------------**---------------------------------------------------**-------**-----	HWUSI-EAS149L_0095_FC:1:111:4850:20696#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG	0.9411764705882353	0.0	0.9888888888888889
-----------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:103:19349:6942#0/1	ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT	1.0	0.3333333333333333	1.0
-------------------------**---------------------------------------------------@@-------**------	HWUSI-EAS149L_0095_FC:1:70:12921:5624#0/1	ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT	1.0	0.3333333333333333	0.989010989010989
------------------------**---------------------------------------------------**-------**------	HWUSI-EAS149L_0095_FC:1:25:3221:7590#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT	1.0	0.0	0.9888888888888889
 -----------------------**---------------------------------------------------@@-------**-----	HWUSI-EAS149L_0095_FC:1:34:3615:18454#0/1	TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG	1.0	0.3333333333333333	1.0
 -------------------------@@---------------------------------------------------@@-------@@-----	HWUSI-EAS149L_0095_FC:1:118:17634:13195#0/1	AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG	1.0	1.0	1.0
diff --git a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_MethylationWithSNP.txt b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_MethylationWithSNP.txt
index 6b3a9c6..a0d8415 100644
--- a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_MethylationWithSNP.txt
+++ b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_MethylationWithSNP.txt
@@ -1,4 +1,4 @@
 MethylationWithSNP	count	percentage	MethylParent
-CGAGGATGGCTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTCCCACTGCGAAGCAGGCGACCTGCT	ref
-**---------------------------------------------------**-------*A-------	174	0.344554	0
-**---------------------------------------------------@@-------@@-------	189	0.374257	1
+CGAGGATGGCTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTCCCACTGCGAAGCAGGCGACCTGC	ref
+**---------------------------------------------------**-------*A------	221	0.345313	0
+**---------------------------------------------------@@-------@@------	237	0.370313	1
diff --git a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_report.txt b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_report.txt
index eed16ca..2d084e9 100644
--- a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_report.txt
+++ b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_report.txt
@@ -1,11 +1,11 @@
 target region start position:	31
-target region length:	71
+target region length:	70
 Bisulfite conversion rate threshold:	0.9
 Sequence identity threshold:	0.9
-A. Sequences cover whole target region:	521
-A. After quality control:	505
-B. Sequences don't cover whole target but cover all CpGs:	269
-B. After quality control:	263
+A. Sequences cover whole target region:	658
+A. After quality control:	640
+B. Sequences don't cover whole target but cover all CpGs:	132
+B. After quality control:	128
 C. Sequences cover neither target nor all CpGs:	3
 methylation rate for each CpG site:
 pos	rate
@@ -83,4 +83,3 @@ mismatch stat:
 68	ref:T	A:0	C:0	G:0	T:0	N:0	total:     0	coverage:768
 69	ref:G	A:1	C:0	G:0	T:0	N:0	total:     1	coverage:768
 70	ref:C	A:0	C:0	G:2	T:0	N:0	total:     2	coverage:640
-71	ref:T	A:0	C:2	G:0	T:0	N:0	total:     2	coverage:505
diff --git a/BSPAT/testFiles/experiment2/pics/LOC440034_ASM.bed b/BSPAT/testFiles/experiment2/pics/LOC440034_ASM.bed
index 42cd144..df8a3d9 100644
--- a/BSPAT/testFiles/experiment2/pics/LOC440034_ASM.bed
+++ b/BSPAT/testFiles/experiment2/pics/LOC440034_ASM.bed
@@ -1,13 +1,13 @@
-browser position chr11:31794641-31794711
+browser position chr11:31794641-31794710
 browser hide all
 track name="PatternA" description="experiment2-LOC440034-ASM" visibility=1 itemRgb="On"
-chr11	31794640	31794711	refbar	0	+	31794640	31794640	0,0,0
-chr11	31794693	31794695	CG-PatternA	251	+	31794693	31794695	255,41,0
-chr11	31794702	31794704	CG-PatternA	212	+	31794702	31794704	255,111,0
-chr11	31794640	31794642	CG-PatternA	20	+	31794640	31794642	37,255,0
+chr11	31794640	31794710	refbar	0	+	31794640	31794640	0,0,0
+chr11	31794693	31794695	CG-PatternA	317	+	31794693	31794695	255,40,0
+chr11	31794702	31794704	CG-PatternA	266	+	31794702	31794704	255,113,0
+chr11	31794640	31794642	CG-PatternA	24	+	31794640	31794642	35,255,0
 track name="PatternB" description="experiment2-LOC440034-ASM" visibility=1 itemRgb="On"
-chr11	31794640	31794711	refbar	0	+	31794640	31794640	0,0,0
-chr11	31794693	31794695	CG-PatternB	35	+	31794693	31794695	77,255,0
-chr11	31794702	31794704	CG-PatternB	5	+	31794702	31794704	11,255,0
-chr11	31794640	31794642	CG-PatternB	24	+	31794640	31794642	53,255,0
+chr11	31794640	31794710	refbar	0	+	31794640	31794640	0,0,0
+chr11	31794693	31794695	CG-PatternB	46	+	31794693	31794695	79,255,0
+chr11	31794702	31794704	CG-PatternB	7	+	31794702	31794704	12,255,0
+chr11	31794640	31794642	CG-PatternB	31	+	31794640	31794642	53,255,0
 chr11	31794703	31794704	SNP-Pattern0	1000	+	31794703	31794704	0,0,255
diff --git a/BSPAT/testFiles/experiment2/pics/LOC440034_ASM.png b/BSPAT/testFiles/experiment2/pics/LOC440034_ASM.png
index ae9dd38..015a0c9 100644
Binary files a/BSPAT/testFiles/experiment2/pics/LOC440034_ASM.png and b/BSPAT/testFiles/experiment2/pics/LOC440034_ASM.png differ
diff --git a/BSPAT/testFiles/experiment2/pics/LOC440034_MethylationWithSNP.bed b/BSPAT/testFiles/experiment2/pics/LOC440034_MethylationWithSNP.bed
index aff42e0..154ccea 100644
--- a/BSPAT/testFiles/experiment2/pics/LOC440034_MethylationWithSNP.bed
+++ b/BSPAT/testFiles/experiment2/pics/LOC440034_MethylationWithSNP.bed
@@ -1,20 +1,20 @@
-browser position chr11:31794641-31794711
+browser position chr11:31794641-31794710
 browser hide all
 track name="Pattern0" description="experiment2-LOC440034" visibility=1 itemRgb="On"
-chr11	31794640	31794711	refbar	0	+	31794640	31794640	0,0,0
+chr11	31794640	31794710	refbar	0	+	31794640	31794640	0,0,0
 chr11	31794640	31794642	CG-Pattern0	0	+	31794640	31794642	224,224,224
 chr11	31794693	31794695	CG-Pattern0	0	+	31794693	31794695	224,224,224
 chr11	31794702	31794704	CG-Pattern0	0	+	31794702	31794704	224,224,224
 chr11	31794703	31794704	SNP-Pattern0	1000	+	31794703	31794704	0,0,255
 track name="Pattern1" description="experiment2-LOC440034" visibility=1 itemRgb="On"
-chr11	31794640	31794711	refbar	0	+	31794640	31794640	0,0,0
+chr11	31794640	31794710	refbar	0	+	31794640	31794640	0,0,0
 chr11	31794640	31794642	CG-Pattern1	0	+	31794640	31794642	224,224,224
 chr11	31794693	31794695	CG-Pattern1	0	+	31794693	31794695	0,0,0
 chr11	31794702	31794704	CG-Pattern1	0	+	31794702	31794704	0,0,0
-browser position chr11:31794641-31794711
+browser position chr11:31794641-31794710
 browser hide all
 track name="Average" description="experiment2-LOC440034" visibility=1 itemRgb="On"
-chr11	31794640	31794711	refbar	0	+	31794640	31794640	0,0,0
+chr11	31794640	31794710	refbar	0	+	31794640	31794640	0,0,0
 chr11	31794640	31794642	CG-Pattern-Average	0	+	31794640	31794642	45,255,0
 chr11	31794693	31794695	CG-Pattern-Average	0	+	31794693	31794695	255,220,0
 chr11	31794702	31794704	CG-Pattern-Average	0	+	31794702	31794704	216,255,0
diff --git a/BSPAT/testFiles/experiment2/pics/LOC440034_MethylationWithSNP.png b/BSPAT/testFiles/experiment2/pics/LOC440034_MethylationWithSNP.png
index 3f579c9..df030cf 100644
Binary files a/BSPAT/testFiles/experiment2/pics/LOC440034_MethylationWithSNP.png and b/BSPAT/testFiles/experiment2/pics/LOC440034_MethylationWithSNP.png differ
diff --git a/BSPAT/web/WEB-INF/config.properties b/BSPAT/web/WEB-INF/config.properties
index d0d0ec6..fb8d176 100644
--- a/BSPAT/web/WEB-INF/config.properties
+++ b/BSPAT/web/WEB-INF/config.properties
@@ -1,6 +1,6 @@
 gmailUsername=username
 gmailPassword=password
-bismarkPath=/path/bismark_v0.14.2_noSleep/
-bowtiePath=/path/bowtie-1.1.1/
+bismarkPath=/home/lancelothk/software/bismark_v0.14.2_noSleep/
+bowtiePath=/home/lancelothk/software/bowtie-1.1.1/
 figure_font=Arial
 useSingleThread=FALSE
diff --git a/BSPAT/web/manualAnalysis.jsp b/BSPAT/web/manualAnalysis.jsp
index a37c977..2d894c7 100644
--- a/BSPAT/web/manualAnalysis.jsp
+++ b/BSPAT/web/manualAnalysis.jsp
@@ -177,9 +177,7 @@
                         <p class="ptext">If no target coordinate file uploaded, by default BSPAT will use
                             a <%=BSSeqAnalysis.DEFAULT_TARGET_LENGTH%>bp region start from the first CpG in the
                             reference. If this region exceeds the end of reference, a region from the first CpG to the
-                            end of reference will be used. If there is no CpG found in the reference,
-                            a <%=BSSeqAnalysis.DEFAULT_TARGET_LENGTH%>bp region start from the beginning of reference
-                            will be used.</p>
+                            end of reference will be used.</p>
 
                         <p class="ptext">
                             Notice: In the analysis procedure, only sequences fully covering target region will be
diff --git a/BSPAT_analysis/BSPAT_analysis.iml b/BSPAT_analysis/BSPAT_analysis.iml
index 94d7d78..5391389 100644
--- a/BSPAT_analysis/BSPAT_analysis.iml
+++ b/BSPAT_analysis/BSPAT_analysis.iml
@@ -11,6 +11,7 @@
     <orderEntry type="library" name="super-csv" level="project" />
     <orderEntry type="library" name="commons-lang3-3.3.2" level="project" />
     <orderEntry type="library" name="guava" level="project" />
+    <orderEntry type="library" name="apache http" level="project" />
   </component>
   <component name="org.twodividedbyzero.idea.findbugs">
     <option name="_basePreferences">