From 2c201a53ef37a03656e6f77ecf7951fe64d4021c Mon Sep 17 00:00:00 2001 From: Ke Hu Date: Thu, 30 Jul 2015 18:06:17 -0400 Subject: [PATCH 01/16] refactor ImportBismarkResult --- .../cwru/cbc/BSPAT/core/BSSeqAnalysis.java | 29 ++++++++++++++----- 1 file changed, 22 insertions(+), 7 deletions(-) diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java index 1114632..5c3fae0 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java @@ -205,15 +205,30 @@ private Map getStringCoordinateMap(Constant constant, Map Date: Thu, 30 Jul 2015 20:56:56 -0400 Subject: [PATCH 02/16] fix minus strand default extention --- .../cwru/cbc/BSPAT/core/BSSeqAnalysis.java | 46 ++++++++++--------- 1 file changed, 24 insertions(+), 22 deletions(-) diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java index 5c3fae0..b5ffe38 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java @@ -202,33 +202,35 @@ private Map getStringCoordinateMap(Constant constant, Map refCoorMap.get(key).getStart() ? startPos : refCoorMap.get(key) + .getStart(), refCoorMap.get(key).getEnd())); } - } } } From 013c4cb843afbf13427fe4f8a42bbe2533f61007 Mon Sep 17 00:00:00 2001 From: lancelothk Date: Thu, 30 Jul 2015 21:37:09 -0400 Subject: [PATCH 03/16] fix minus strand default extention --- .../edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java | 17 +++++++++-------- 1 file changed, 9 insertions(+), 8 deletions(-) diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java index b5ffe38..4544664 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java @@ -82,8 +82,8 @@ public List execute(String experimentName, tmpTargetRefSeq = refSeq.substring(targetStart, targetEnd + 1); } - int startCpGPos = tmpTargetRefSeq.indexOf("CG") + targetStart - 1; - int endCpGPos = tmpTargetRefSeq.lastIndexOf("CG") + targetStart - 1; + int startCpGPos = tmpTargetRefSeq.indexOf("CG") + targetStart; + int endCpGPos = tmpTargetRefSeq.lastIndexOf("CG") + targetStart; String targetRefSeq = refSeq.substring(targetStart, targetEnd + 1); boolean isStartCpGPartial = (startCpGPos == targetStart - 1); boolean isEndCpGPartial = (endCpGPos == targetEnd); @@ -212,24 +212,26 @@ private Map getStringCoordinateMap(Constant constant, Map refCoorMap.get(key).getStart() ? startPos : refCoorMap.get(key) - .getStart(), refCoorMap.get(key).getEnd())); + startPos, + endPos < refCoorMap.get(key).getEnd() ? endPos : refCoorMap.get(key).getEnd())); } } } @@ -543,7 +545,6 @@ private List getMethylPattern(List allMethylSequences, private int[][] calculateMismatchStat(String targetRefSeq, int targetStart, int targetEnd, List targetSequencesList) { int[][] mismatchStat = new int[targetRefSeq.length()][6]; // 6 possible values. - // TODO double check and refactor for (Sequence seq : targetSequencesList) { char[] seqArray = seq.getOriginalSeq().toCharArray(); Arrays.fill(seqArray, '-'); From c93549dce872ca3c24643b02fcb778f5d9b6cbed Mon Sep 17 00:00:00 2001 From: lancelothk Date: Thu, 30 Jul 2015 22:01:33 -0400 Subject: [PATCH 04/16] fix mutation in Cpg --- BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java | 8 ++++---- BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java | 4 ++++ 2 files changed, 8 insertions(+), 4 deletions(-) diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java index 4544664..ad96431 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java @@ -82,13 +82,13 @@ public List execute(String experimentName, tmpTargetRefSeq = refSeq.substring(targetStart, targetEnd + 1); } - int startCpGPos = tmpTargetRefSeq.indexOf("CG") + targetStart; - int endCpGPos = tmpTargetRefSeq.lastIndexOf("CG") + targetStart; + int startCpGPos = tmpTargetRefSeq.indexOf("CG") + targetStart - 1; + int endCpGPos = tmpTargetRefSeq.lastIndexOf("CG") + targetStart - 1; String targetRefSeq = refSeq.substring(targetStart, targetEnd + 1); boolean isStartCpGPartial = (startCpGPos == targetStart - 1); boolean isEndCpGPartial = (endCpGPos == targetEnd); - int cpgBoundedStart = isStartCpGPartial ? startCpGPos + 1 : startCpGPos; - int cpgBoundedEnd = isEndCpGPartial ? endCpGPos : endCpGPos + 1; + int cpgBoundedStart = isStartCpGPartial ? startCpGPos + 2 : startCpGPos + 1; + int cpgBoundedEnd = isEndCpGPartial ? endCpGPos + 1 : endCpGPos + 2; String cpgRefSeq = refSeq.substring(cpgBoundedStart, cpgBoundedEnd + 1); // processing sequences diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java index 6cc58f9..594d2b2 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java @@ -83,6 +83,8 @@ public List readPatternFile(String region, String patternType) th i++; } else if (i == 0) { cpg = new CpGSitePattern(i - 1, false); + } else if (items[0].charAt(i - 1) != '-') { + cpg = new CpGSitePattern(i - 1, false); } patternResult.addCpG(cpg); } else if (items[0].charAt(i) == '@') { @@ -91,6 +93,8 @@ public List readPatternFile(String region, String patternType) th i++; } else if (i == 0) { cpg = new CpGSitePattern(i - 1, true); + } else if (items[0].charAt(i - 1) != '-') { + cpg = new CpGSitePattern(i - 1, false); } patternResult.addCpG(cpg); } else if (items[0].charAt(i) == 'A' || items[0].charAt(i) == 'C' || items[0].charAt(i) == 'G' || From d15efa7176ed9a9db68dabc547d78be823f43e5b Mon Sep 17 00:00:00 2001 From: lancelothk Date: Thu, 30 Jul 2015 22:16:04 -0400 Subject: [PATCH 05/16] fix minus strand snp position & replace unnecessary valueof with parse --- .../cbc/BSPAT/Servlet/AnalysisServlet.java | 8 ++++---- .../cwru/cbc/BSPAT/Servlet/MappingServlet.java | 6 +++--- .../edu/cwru/cbc/BSPAT/core/DrawPattern.java | 18 +++++++++++++----- BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java | 5 +++-- .../cbc/BSPAT/core/ReadAnalysisResult.java | 8 ++++---- .../src/edu/cwru/cbc/BSPAT/core/Utilities.java | 4 ++-- 6 files changed, 29 insertions(+), 20 deletions(-) diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/AnalysisServlet.java b/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/AnalysisServlet.java index 03a538c..22c9534 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/AnalysisServlet.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/AnalysisServlet.java @@ -90,16 +90,16 @@ public void doPost(HttpServletRequest request, HttpServletResponse response) { } constant.figureFormat = request.getParameter("figureFormat"); // set figure format if (request.getParameter("criticalValue") != null) { - constant.criticalValue = Double.valueOf(request.getParameter("criticalValue")); + constant.criticalValue = Double.parseDouble(request.getParameter("criticalValue")); constant.minMethylThreshold = 0.1; } else if (request.getParameter("minmethyltext") != null) { - constant.minMethylThreshold = Double.valueOf(request.getParameter("minmethyltext")); + constant.minMethylThreshold = Double.parseDouble(request.getParameter("minmethyltext")); constant.criticalValue = -1; } constant.SNPThreshold = Double.valueOf(request.getParameter("SNPThreshold")); - constant.conversionRateThreshold = Double.valueOf(request.getParameter("conversionRateThreshold")); - constant.sequenceIdentityThreshold = Double.valueOf(request.getParameter("sequenceIdentityThreshold")); + constant.conversionRateThreshold = Double.parseDouble(request.getParameter("conversionRateThreshold")); + constant.sequenceIdentityThreshold = Double.parseDouble(request.getParameter("sequenceIdentityThreshold")); // clean up result directory and result zip file Utilities.deleteFolderContent(constant.patternResultPath); diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/MappingServlet.java b/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/MappingServlet.java index 29d66c5..971e064 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/MappingServlet.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/Servlet/MappingServlet.java @@ -86,7 +86,7 @@ public void doPost(HttpServletRequest request, HttpServletResponse response) { constant.refVersion = request.getParameter("refVersion"); constant.coorFileName = "coordinates.coor"; constant.qualsType = request.getParameter("qualsType"); - constant.maxmis = Integer.valueOf(request.getParameter("maxmis")); + constant.maxmis = Integer.parseInt(request.getParameter("maxmis")); constant.experiments = experiments; constant.email = request.getParameter("email"); // execute BLAT query @@ -105,7 +105,7 @@ public void doPost(HttpServletRequest request, HttpServletResponse response) { // multiple threads to execute bismark mapping ExecutorService executor; - if (Boolean.valueOf(properties.getProperty("useSingleThread"))) { + if (Boolean.parseBoolean(properties.getProperty("useSingleThread"))) { executor = Executors.newSingleThreadExecutor(); // single thread } else { executor = Executors.newCachedThreadPool(); // multiple threads @@ -184,7 +184,7 @@ private void handleUploadedFiles(Constant constant, HttpServletRequest request, // save ref file in ref folder IO.saveFileToDisk(part, constant.originalRefPath, fileName); } else if (fieldName.startsWith("seqFile")) { // deal with uploaded seq file - int seqFileIndex = Integer.valueOf(part.getName().replace("seqFile", "")); + int seqFileIndex = Integer.parseInt(part.getName().replace("seqFile", "")); for (Experiment experiment : experiments) { // match file index and seq file index if (experiment.getIndex() == seqFileIndex) { experiment.setSeqFile(fileName); diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java index 518fd90..ace4dca 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java @@ -262,9 +262,17 @@ public void drawASMPattern(ReportSummary reportSummary, PatternResult patternWit // set snp info if (patternWithAllele.hasAllele()) { List snpList; - snpList = retreiveSNP(chr, convertCoordinates(chr, coordinateMap.get(region).getStart(), "hg38", - patternResultPath, logPath) + - patternWithAllele.getAlleleList().get(0), "1"); + int snpQueryPos; + if (strand.equals("+")) { + snpQueryPos = convertCoordinates(chr, coordinateMap.get(region).getStart(), "hg38", + patternResultPath, logPath) + patternWithAllele.getAlleleList().get(0); + } else if (strand.equals("-")) { + snpQueryPos = convertCoordinates(chr, coordinateMap.get(region).getEnd(), "hg38", + patternResultPath, logPath) - patternWithAllele.getAlleleList().get(0); + } else { + throw new RuntimeException("invalid strand:" + strand); + } + snpList = retreiveSNP(chr, snpQueryPos, "1"); if (snpList != null && snpList.size() > 0) { reportSummary.setASMsnp(snpList.get(0)); } @@ -383,7 +391,7 @@ private List retreiveSNP(String chr, long pos, String maxRet) throws Remote return snps; } - private long convertCoordinates(String chr, long pos, String targetRefVersion, String patternResultPath, + private int convertCoordinates(String chr, int pos, String targetRefVersion, String patternResultPath, String logPath) throws IOException, InterruptedException { if (refVersion.equals(targetRefVersion)) { return pos; @@ -421,7 +429,7 @@ private long convertCoordinates(String chr, long pos, String targetRefVersion, S throw new RuntimeException("Failed to delete: " + originPosFile.getAbsolutePath()); } IO.deleteFiles(patternResultPath, new String[]{".bed", ".bedmapped", ".bedunmapped"}); - return Long.valueOf(items[1].split("-")[0]); + return Integer.parseInt(items[1].split("-")[0]); } } diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java index e38b9c0..c2a38a4 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java @@ -45,8 +45,9 @@ public static HashMap readCoordinates(String coorPath, Strin throw new RuntimeException( "invalid coordinate file! Please double check your uploaded coordinate file"); } - coordinateHash.put(items[0], new Coordinate(items[0], items[1], items[2], Integer.valueOf(items[3]), - Integer.valueOf(items[4]))); + coordinateHash.put(items[0], + new Coordinate(items[0], items[1], items[2], Integer.parseInt(items[3]), + Integer.parseInt(items[4]))); } line = coordinatesBuffReader.readLine(); } diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java index 594d2b2..1afe409 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java @@ -47,8 +47,8 @@ private void readStatFile(String ID) throws IOException { break; } // start from target start. 0-based. - CpGStatistics cpgStat = new CpGStatistics(Integer.valueOf(items[0]) - targetStart); - cpgStat.setMethylLevel(Double.valueOf(items[1])); + CpGStatistics cpgStat = new CpGStatistics(Integer.parseInt(items[0]) - targetStart); + cpgStat.setMethylLevel(Double.parseDouble(items[1])); statList.add(cpgStat); line = statBuffReader.readLine(); } @@ -103,8 +103,8 @@ public List readPatternFile(String region, String patternType) th } } patternResultLists.add(patternResult); - patternResult.setCount(Integer.valueOf(items[1])); - patternResult.setPercent(Double.valueOf(items[2])); + patternResult.setCount(Integer.parseInt(items[1])); + patternResult.setPercent(Double.parseDouble(items[2])); line = patternBuffReader.readLine(); } } diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/Utilities.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/Utilities.java index 3103af4..1ed4f7b 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/Utilities.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/Utilities.java @@ -72,8 +72,8 @@ public static void convertPSLtoCoorPair(String path, String outFileName) throws if (!coorHashMap.containsKey(items[0]) && items[1].equals(items[4])) { // first query match, score equals query size coorHashMap.put(items[0], - new Coordinate(items[0], items[6], items[7], Integer.valueOf(items[8]), - Integer.valueOf(items[9]))); + new Coordinate(items[0], items[6], items[7], Integer.parseInt(items[8]), + Integer.parseInt(items[9]))); } } } From 21019d900b9e2a8eadf24ba099f3ad3865a579bc Mon Sep 17 00:00:00 2001 From: lancelothk Date: Thu, 30 Jul 2015 22:27:20 -0400 Subject: [PATCH 06/16] reduce one bp for default extension --- BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java index ad96431..94a2428 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java @@ -209,10 +209,10 @@ private Map getStringCoordinateMap(Constant constant, Map getStringCoordinateMap(Constant constant, Map Date: Thu, 30 Jul 2015 23:14:49 -0400 Subject: [PATCH 07/16] fixed cpg position --- .../cwru/cbc/BSPAT/core/BSSeqAnalysis.java | 33 ++++++++++--------- 1 file changed, 17 insertions(+), 16 deletions(-) diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java index 94a2428..c0a090b 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java @@ -74,21 +74,22 @@ public List execute(String experimentName, .length()) { throw new RuntimeException("invalid target coordinates! out of reference!"); } - String tmpTargetRefSeq; - if (targetStart != 0 && targetEnd != refSeq.length() - 1) { - tmpTargetRefSeq = refSeq.substring(targetStart - 1, - targetEnd + 2); // used to include one more bp on both ends to detect CpG sites. - } else { - tmpTargetRefSeq = refSeq.substring(targetStart, - targetEnd + 1); + int tmpStart = 0, tmpEnd = 0; + // used to include one more bp on both ends to detect CpG sites. + if (targetStart != 0) { + tmpStart--; + } + if (targetEnd != refSeq.length() - 1) { + tmpEnd++; } - int startCpGPos = tmpTargetRefSeq.indexOf("CG") + targetStart - 1; - int endCpGPos = tmpTargetRefSeq.lastIndexOf("CG") + targetStart - 1; + String tmpTargetRefSeq = refSeq.substring(targetStart + tmpStart, targetEnd + tmpEnd + 1); + int startCpGPos = tmpTargetRefSeq.indexOf("CG") + targetStart + tmpStart; + int endCpGPos = tmpTargetRefSeq.lastIndexOf("CG") + targetStart + tmpStart; String targetRefSeq = refSeq.substring(targetStart, targetEnd + 1); boolean isStartCpGPartial = (startCpGPos == targetStart - 1); boolean isEndCpGPartial = (endCpGPos == targetEnd); - int cpgBoundedStart = isStartCpGPartial ? startCpGPos + 2 : startCpGPos + 1; - int cpgBoundedEnd = isEndCpGPartial ? endCpGPos + 1 : endCpGPos + 2; + int cpgBoundedStart = isStartCpGPartial ? startCpGPos + 1 : startCpGPos; + int cpgBoundedEnd = isEndCpGPartial ? endCpGPos : endCpGPos + 1; String cpgRefSeq = refSeq.substring(cpgBoundedStart, cpgBoundedEnd + 1); // processing sequences @@ -212,8 +213,8 @@ private Map getStringCoordinateMap(Constant constant, Map getStringCoordinateMap(Constant constant, Map Date: Thu, 30 Jul 2015 23:20:16 -0400 Subject: [PATCH 08/16] update integration test. --- .../edu/cwru/cbc/BSPAT/IntegrationTest.java | 8 +- .../LOC440034_bismark.analysis.filtered.txt | 2 + .../LOC440034_bismark.analysis.txt | 135 ++++++++++++++++++ ...4_bismark.analysis_CpGBounded.filtered.txt | 2 - .../LOC440034_bismark.analysis_CpGBounded.txt | 135 ------------------ ...34_bismark.analysis_MethylationWithSNP.txt | 6 +- .../LOC440034_bismark.analysis_report.txt | 11 +- .../experiment1/pics/LOC440034_ASM.bed | 18 +-- .../experiment1/pics/LOC440034_ASM.png | Bin 5005 -> 5041 bytes .../pics/LOC440034_MethylationWithSNP.bed | 10 +- .../pics/LOC440034_MethylationWithSNP.png | Bin 4650 -> 4662 bytes .../LOC440034_bismark.analysis.filtered.txt | 2 + .../LOC440034_bismark.analysis.txt | 135 ++++++++++++++++++ ...4_bismark.analysis_CpGBounded.filtered.txt | 2 - .../LOC440034_bismark.analysis_CpGBounded.txt | 135 ------------------ ...34_bismark.analysis_MethylationWithSNP.txt | 6 +- .../LOC440034_bismark.analysis_report.txt | 11 +- .../experiment2/pics/LOC440034_ASM.bed | 18 +-- .../experiment2/pics/LOC440034_ASM.png | Bin 5018 -> 5051 bytes .../pics/LOC440034_MethylationWithSNP.bed | 10 +- .../pics/LOC440034_MethylationWithSNP.png | Bin 4660 -> 4670 bytes 21 files changed, 322 insertions(+), 324 deletions(-) diff --git a/BSPAT/test/edu/cwru/cbc/BSPAT/IntegrationTest.java b/BSPAT/test/edu/cwru/cbc/BSPAT/IntegrationTest.java index 835fe73..3ac4136 100644 --- a/BSPAT/test/edu/cwru/cbc/BSPAT/IntegrationTest.java +++ b/BSPAT/test/edu/cwru/cbc/BSPAT/IntegrationTest.java @@ -128,13 +128,13 @@ private void testAnalysis(String jobID) throws ServletException { verify(request, Mockito.times(1)).getRequestDispatcher("analysisResult.jsp"); - assertEquals("Sequence number cover target region", 1042, + assertEquals("Sequence number cover target region", 1316, myAnswer.resultConstant.seqCountSummary.getSeqTargetBounded()); - assertEquals("Sequence number after filtering", 1010, + assertEquals("Sequence number after filtering", 1280, myAnswer.resultConstant.seqCountSummary.getSeqTargetAfterFilter()); - assertEquals("Sequences don't cover whole target but cover all CpGs", 538, + assertEquals("Sequences don't cover whole target but cover all CpGs", 264, myAnswer.resultConstant.seqCountSummary.getSeqCpGBounded()); - assertEquals("CpG bounded Sequence number after filtering", 526, + assertEquals("CpG bounded Sequence number after filtering", 256, myAnswer.resultConstant.seqCountSummary.getSeqCpGAfterFilter()); assertEquals("Sequences cover neither target nor all CpGs", 6, myAnswer.resultConstant.seqCountSummary.getSeqOthers()); diff --git a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.filtered.txt b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.filtered.txt index 8727c76..814739c 100644 --- a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.filtered.txt +++ b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.filtered.txt @@ -1,4 +1,5 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate sequenceIdentity +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:32:14975:14119#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGCAGGTAATTTGT 0.8888888888888888 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:45:8236:15678#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTTT 0.8888888888888888 0.0 0.989010989010989 ----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:100:17798:18841#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTTTTATTGCGAAGTAGGCAATCTGCTCG 0.6470588235294117 0.75 0.989010989010989 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:102:6429:20030#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTTTG 0.8888888888888888 0.0 0.9891304347826086 @@ -10,6 +11,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:108:11439:20961#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACCTTTTATTGCGAAGTAGGCAATCTGCT 0.6666666666666667 0.6666666666666666 0.978021978021978 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:3:13101:10743#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATCTGTT 0.8888888888888888 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:110:3817:10383#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGTTT 0.8888888888888888 0.5 1.0 +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:86:19255:9841#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGC 0.8888888888888888 0.0 0.9782608695652174 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:45:18827:9589#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTCTATTGTGAAGTAGGTGATTTGTTTG 0.8888888888888888 0.0 1.0 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:52:8098:9795#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTCTCATTGTGAAGTAGGTAATTTGTTT 0.8888888888888888 0.0 0.978021978021978 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:107:11427:9924#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTGGGTAATTTGTT 0.8888888888888888 0.0 0.9782608695652174 diff --git a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.txt b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.txt index 6f486a3..7617a6b 100644 --- a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.txt +++ b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.txt @@ -1,15 +1,19 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate sequenceIdentity +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:77:15843:7025#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGGTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.978021978021978 --------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:118:10163:15066#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9893617021276596 --------------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:116:6513:3332#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT 1.0 0.25 1.0 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:64:6064:6301#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTT 0.9411764705882353 0.0 0.9888888888888889 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:50:3543:3982#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989010989010989 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:88:11663:11929#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:116:15786:14188#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 +--------------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:92:11236:12432#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 1.0 1.0 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:23:18788:10690#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9891304347826086 --------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:53:9039:17208#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 0.9444444444444444 0.25 1.0 --------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:31:8560:8037#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9893617021276596 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:34:9868:11675#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:52:5458:8979#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989247311827957 -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:99:17223:20202#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTTC 0.9444444444444444 0.25 0.989010989010989 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:14182:3401#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGCAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:98:15532:4743#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:84:16790:17928#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9782608695652174 ------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:17:1650:9020#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9891304347826086 @@ -24,17 +28,22 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:81:2126:2067#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTTG 0.9411764705882353 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:77:6882:19754#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTACGAAGTAGGCGATTTGTTT 1.0 0.5 0.989010989010989 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:113:4381:5459#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9789473684210527 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:23:3544:17576#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:112:6312:15491#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTT 0.9444444444444444 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:49:3280:12447#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGTGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:39:6051:10800#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:21:12398:11200#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:62:3955:15584#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9893617021276596 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:48:13283:5382#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:91:14478:9905#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTTG 1.0 0.25 0.9891304347826086 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:94:14114:5795#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989247311827957 ----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:52:10994:14701#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:108:12552:12456#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:114:1524:5369#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATATGT 1.0 0.6666666666666666 0.9891304347826086 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:99:14837:15848#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989247311827957 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:16:8110:19717#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTCTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 0.9888888888888889 ----------------------@@---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:35:12011:17252#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.6666666666666666 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:10309:18134#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:27:13188:14342#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 0.9444444444444444 0.0 0.9891304347826086 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:102:16057:2332#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:112:17479:5885#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 @@ -42,9 +51,11 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------@@---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:35:4236:2753#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.25 0.9888888888888889 ------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:107:5368:6505#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:56:13453:19173#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:29:4284:15142#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTGT 0.9444444444444444 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:74:18136:12428#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:110:10124:14725#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTT 0.9411764705882353 0.0 0.9888888888888889 --------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:91:7483:3209#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 1.0 0.25 1.0 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:10999:18048#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:23:6840:16272#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:59:18254:10338#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989247311827957 ------------------------**---------------------------------------------------**-------@@-------@ HWUSI-EAS149L_0095_FC:1:57:12398:14558#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTTC 1.0 0.5 1.0 @@ -52,44 +63,59 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:90:9282:21266#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGATGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.978494623655914 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:107:9537:19119#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCTT 0.9444444444444444 0.0 0.978021978021978 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:99:6620:7249#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTATATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.9891304347826086 +-----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:71:18108:10304#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:68:17784:10197#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG 1.0 0.0 0.989010989010989 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:35:7916:15828#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:1:17768:19822#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCAATTTGTT 1.0 0.6666666666666666 0.9893617021276596 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:55:15693:4569#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGGTTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTC 1.0 0.6666666666666666 0.967032967032967 ----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:48:9039:18168#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGGAGGCGATTTGTT 1.0 0.6666666666666666 0.9777777777777777 ------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:16:11867:10603#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTCTTTATTGTGAAGTAGGTAATTTGTTT 0.9444444444444444 0.0 0.9782608695652174 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:48:17585:2858#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989247311827957 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:34:9290:2499#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 --------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:104:5325:11721#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9893617021276596 -------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:44:8043:14275#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.9893617021276596 --------------------------**---------------------------------------------------@@-------**-------@@ HWUSI-EAS149L_0095_FC:1:117:4564:13275#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTCG 1.0 0.5 0.9894736842105263 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:87:17487:12523#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGATAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 0.9894736842105263 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:103:9126:5944#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 --------------------------@@---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:85:18603:20747#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.5 0.9789473684210527 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:25:16942:6712#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:15:6344:17401#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9891304347826086 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:32:7807:18666#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9782608695652174 -------------------------**------------------------------------------------------------@@-------@ HWUSI-EAS149L_0095_FC:1:3:3926:1960#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGAGAAGTAGGCGATTTGTTC 0.9473684210526316 0.6666666666666666 0.9893617021276596 +----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:12:4425:10017#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:111:12785:8648#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 0.9444444444444444 0.5 1.0 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:64:13719:6381#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 +--------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:82:19792:14707#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 0.989247311827957 +----------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:59:11197:14029#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTACGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT 0.9411764705882353 0.3333333333333333 0.9775280898876404 ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:31:18528:8852#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:44:16473:19066#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:100:5200:10879#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 +-----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:53:12802:19448#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9888888888888889 --------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:12:7760:2089#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGGAGGCGATTTGTTT 0.9444444444444444 0.5 0.9893617021276596 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:21:7388:10782#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:25:6921:1178#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989247311827957 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:102:6924:18007#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:40:13258:19735#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:100:16412:11948#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 0.9444444444444444 0.0 0.989247311827957 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:83:7133:6964#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNTGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9777777777777777 ----------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:14:12889:20037#0/1 AATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:92:4196:16829#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9893617021276596 -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:83:11888:14848#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.978021978021978 ----------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:14:7232:3562#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTT 1.0 0.25 0.9888888888888889 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:107:6621:2198#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:31:7080:12250#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGGTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 0.9787234042553191 ----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:79:19152:14336#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTTT 0.9411764705882353 0.0 0.9888888888888889 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:19:11388:19464#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9893617021276596 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:5:17159:6730#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTCATTGCGAAGTAGGCGATTTGTTC 0.9411764705882353 0.75 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:106:9708:2226#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 +--------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:39:13143:15426#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:50:1310:9879#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:119:11804:13266#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 -----------------------@@---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:13:1516:20049#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.5 0.9891304347826086 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:102:6228:10337#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.9891304347826086 ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:85:17498:15821#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.9888888888888889 -----------------------@@---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:111:8517:12412#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.25 0.989010989010989 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:103:2628:10191#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:62:5734:6699#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGTTTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9777777777777777 ----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:1:3421:8774#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:22:11293:1481#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 @@ -98,22 +124,32 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:70:5730:17725#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:9:16907:8644#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 ------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:61:10279:6054#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGCTC 0.9444444444444444 0.75 0.9891304347826086 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:102:5313:18932#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT 1.0 0.0 1.0 ------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:5:3085:18998#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 0.9891304347826086 --------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:92:4039:5825#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.9893617021276596 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:27:2732:17318#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9888888888888889 ------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:51:4585:10580#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTT 0.9444444444444444 0.0 0.9891304347826086 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:34:10051:2459#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:102:6454:8479#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:40:10856:18594#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9893617021276596 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:67:9458:5615#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:85:16848:3379#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 0.9893617021276596 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:77:3732:14626#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:101:6623:14752#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:44:14560:3192#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9891304347826086 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:102:11220:1600#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT 0.9444444444444444 0.0 0.978494623655914 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:93:9706:8567#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATCGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.978494623655914 +------------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:64:9015:5464#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989010989010989 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:15:7540:17757#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTCGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.978494623655914 +-----------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:39:4650:10479#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 1.0 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:54:4965:8189#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGGAGTAGGTAATTTGT 1.0 0.0 0.978494623655914 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:120:2881:8152#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTTT 0.9444444444444444 0.5 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:43:13447:1806#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:82:10039:4336#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9789473684210527 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:59:4720:3310#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:61:8545:16950#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 ----------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:90:18813:12713#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.989010989010989 +--------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:66:2125:10585#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:46:14736:4396#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9894736842105263 -----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:90:2874:15379#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 ----------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:70:2592:1500#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTTCG 0.9411764705882353 0.25 0.989010989010989 @@ -123,12 +159,15 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:40:8611:16197#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.978021978021978 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:25:12563:16716#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGCTTG 0.9444444444444444 0.5 1.0 ------------------------@@---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:70:12612:3362#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTT 1.0 0.5 0.9891304347826086 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:25:13778:17411#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATCGCGAAGCAGGCGATTTGT 0.9444444444444444 0.6666666666666666 0.989010989010989 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:58:12435:12677#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:91:8849:8265#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:21:13519:11772#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 -------------------------**---------------------------------------------------**-------@@-------@ HWUSI-EAS149L_0095_FC:1:26:9943:12912#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGGGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGTTC 0.9444444444444444 0.5 0.989247311827957 --------------------------**---------------------------------------------------@@-------**-------@ HWUSI-EAS149L_0095_FC:1:109:3432:9586#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTC 0.9444444444444444 0.5 1.0 --------------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:69:9410:8065#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAACTTGTTT 0.9444444444444444 0.25 0.9893617021276596 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:51:4164:14098#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989247311827957 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:92:11327:11493#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT 0.9411764705882353 0.0 0.9887640449438202 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:106:7276:11159#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------@@-------* HWUSI-EAS149L_0095_FC:1:66:11418:7696#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTTT 1.0 0.25 0.989010989010989 ------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:94:6925:11821#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9891304347826086 @@ -136,17 +175,23 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:92:6924:11221#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:88:19722:3591#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCTTG 0.9444444444444444 0.0 0.989247311827957 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:20:5553:11948#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:5:15737:20008#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.978494623655914 -----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:16:12993:10414#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTGTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.978021978021978 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:5:6704:5793#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9775280898876404 ----------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:116:15956:4732#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:101:15088:2959#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTCTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 0.9894736842105263 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:12:17583:1833#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 1.0 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:88:13953:13083#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +--------------------------@@---------------------------------------------------**-------@@------ HWUSI-EAS149L_0095_FC:1:30:5197:5711#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGT 1.0 0.6666666666666666 0.989247311827957 +----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:101:9016:4251#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGT 0.9411764705882353 0.3333333333333333 1.0 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:33:11901:2396#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:82:3041:2170#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.9789473684210527 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:84:2500:14136#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 ------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:23:8119:5446#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGGTT 0.9444444444444444 0.5 0.9891304347826086 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:85:17732:14091#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.978021978021978 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:84:18394:12081#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.989247311827957 -------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:30:9371:13789#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 0.9444444444444444 0.0 0.9893617021276596 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:45:15091:4983#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:94:11186:17000#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:120:7792:14002#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -------------------------@@---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:113:3486:16026#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.25 0.989247311827957 @@ -156,10 +201,12 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:19:6116:16506#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:52:5694:13346#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9888888888888889 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:65:11104:18884#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:27:14240:16451#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 ------------------------**---------------------------------------------------**-------@@-------* HWUSI-EAS149L_0095_FC:1:19:19717:18232#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGACTTGTTT 0.9444444444444444 0.25 1.0 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:82:18090:17810#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.989010989010989 -------------------------**---------------------------------------------------**-------@@------- HWUSI-EAS149L_0095_FC:1:63:9973:16478#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTT 1.0 0.3333333333333333 0.978494623655914 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:84:5500:7681#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:86:9386:5659#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.978021978021978 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:91:11393:2881#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG 1.0 0.0 1.0 ----------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:13:15126:8131#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 -------------------------**---------------------------------------------------**-------@@------- HWUSI-EAS149L_0095_FC:1:20:10053:7014#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGCTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTT 1.0 0.3333333333333333 0.989247311827957 @@ -173,7 +220,9 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:94:12939:19620#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:64:15632:1870#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:71:5502:2228#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.989010989010989 +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:44:4202:7452#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9891304347826086 ------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:111:14249:10509#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTT 0.9444444444444444 0.5 1.0 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:3:12922:5118#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 ------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:84:12044:6359#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9891304347826086 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:39:18392:9057#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTCTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.9891304347826086 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:5:7040:17423#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.978021978021978 @@ -184,23 +233,29 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:13:13655:14338#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGCGATTTGTTCG 0.9411764705882353 0.75 1.0 --------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:107:7813:3462#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTCTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9787234042553191 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:99:15350:20472#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +----------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:4:18175:20380#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATCTGT 0.9411764705882353 1.0 0.9887640449438202 ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:119:14231:4902#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:28:15527:2892#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:82:1925:5422#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTAATTTTTATTGCGAAGCAGGCGATTTGT 0.9411764705882353 0.6666666666666666 0.9775280898876404 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:43:7034:13767#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:111:3742:7841#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989247311827957 --------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:54:11618:11257#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 0.9444444444444444 0.25 0.9893617021276596 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:40:2999:11441#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGGTTTGTTTG 1.0 0.5 0.9891304347826086 --------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:9:18755:18704#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9893617021276596 --------------------------@@---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:2:15790:11791#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.25 0.9787234042553191 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:61:13323:20465#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGTGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 0.9894736842105263 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:14:11753:5243#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAACTTGT 0.9444444444444444 0.0 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:53:15819:10255#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:46:12910:7602#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT 1.0 0.25 1.0 ----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:50:6284:15511#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:70:3228:15885#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 -------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:2:11563:4180#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 -----------------------@@---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:83:9753:13233#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 0.9444444444444444 0.5 0.978021978021978 ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:56:10809:9049#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTTT 0.9411764705882353 0.5 1.0 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:50:15021:9805#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGTGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 0.9787234042553191 --------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:88:14959:20003#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:107:13187:18513#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9891304347826086 +--------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:28:5771:16612#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.989247311827957 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:112:6478:19954#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:8:14427:17272#0/1 GAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 --------------------------@@---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:25:15960:2022#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9893617021276596 @@ -210,6 +265,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:53:17499:9298#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989247311827957 ----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:13:17165:17709#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGCTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9777777777777777 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:107:19094:11274#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.989247311827957 +-----------------------@@---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:113:9028:13236#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.6666666666666666 0.9888888888888889 --------------------------@@---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:52:12442:18539#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 1.0 1.0 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:38:17125:8917#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTT 1.0 0.0 1.0 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:44:18234:9205#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.989247311827957 @@ -220,12 +276,19 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:113:16595:14136#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 1.0 0.25 0.9891304347826086 ------------------------**---------------------------------------------------@@-------**-------@@ HWUSI-EAS149L_0095_FC:1:19:4022:11896#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTCG 1.0 0.5 0.989247311827957 ----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:67:9242:3190#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 +-------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:63:6489:5999#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGCGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 0.9891304347826086 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:16:14938:1949#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTNTTTATTGCGAAGCAGGCGATTTGTTTG 0.9444444444444444 0.5 0.9894736842105263 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:79:4216:15468#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTCTGAAGTAGGTAATTTGTT 1.0 0.0 0.9782608695652174 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:56:9413:14341#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 +-------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:109:2145:2574#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 0.9444444444444444 0.3333333333333333 1.0 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:43:16298:11550#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------**-------@ HWUSI-EAS149L_0095_FC:1:79:12871:20232#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTC 1.0 0.5 0.9891304347826086 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:44:19095:13268#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:14:12443:14734#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 ----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:53:7775:6334#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:6:6320:9556#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989010989010989 -----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:36:6468:12513#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGGGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 0.989010989010989 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:114:13733:11173#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT 0.9411764705882353 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:85:15347:11593#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.9888888888888889 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:28:7475:8171#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGCAGGTAATTTGTT 0.9444444444444444 0.0 0.989010989010989 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:5:17961:10326#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.989247311827957 @@ -237,7 +300,9 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:112:13666:18085#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTCGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.978021978021978 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:91:19012:17701#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:32:5769:16856#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAGGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.978021978021978 +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:42:17960:8689#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9891304347826086 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:9:12619:13908#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTTTG 0.9444444444444444 0.0 0.9894736842105263 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:72:1618:18551#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:13:1967:6417#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGATTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.989247311827957 --------------------------@@---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:111:17328:7398#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.6666666666666666 0.9893617021276596 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:9:3185:15386#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 0.9894736842105263 @@ -247,16 +312,23 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:90:16658:19315#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:115:13696:1814#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989247311827957 ----------------------@@---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:70:4495:9676#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 0.9411764705882353 0.3333333333333333 0.9888888888888889 +-----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:9:4354:18324#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGGAGTAGGTGATATGT 0.9444444444444444 0.3333333333333333 0.9777777777777777 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:61:16104:20243#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGGT 0.9444444444444444 0.6666666666666666 0.9891304347826086 ------------------------@@---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:54:5927:18218#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGTGGAGAAGGTTTATTTTTTTTTGCGAAGTAGGCGATTTGTTT 1.0 0.75 0.9782608695652174 -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:55:11992:13207#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.989010989010989 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:10:17906:8553#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:111:14889:9140#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 1.0 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:38:6357:9946#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT 1.0 0.0 1.0 --------------------------@@---------------------------------------------------@@-------**-------@ HWUSI-EAS149L_0095_FC:1:23:18719:15486#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGTGATTTGTTC 0.9444444444444444 0.75 1.0 --------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:114:17505:6886#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9893617021276596 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:31:5478:14639#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:69:4798:7601#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 +--------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:61:5516:2993#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.989247311827957 ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:94:10892:7222#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:19:11249:1874#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 1.0 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:58:14717:7603#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9893617021276596 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:120:13618:9629#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:59:4111:2084#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 -------------------------@@---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:47:11562:11584#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:58:11612:19627#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 1.0 0.25 1.0 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:90:14214:10122#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 @@ -269,6 +341,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:17:2103:11114#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTTG 0.9444444444444444 0.0 0.9894736842105263 -----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:35:10789:18569#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTC 0.9444444444444444 0.75 1.0 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:119:6346:14961#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 +------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:91:4374:15473#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.978021978021978 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:103:3795:3240#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:29:14804:5990#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989247311827957 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:95:7313:16321#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 1.0 @@ -281,12 +354,15 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:103:5164:13563#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 1.0 ----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:114:15155:17906#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9888888888888889 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:6:14985:3997#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTCATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 0.989247311827957 +----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:37:17848:8896#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9887640449438202 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:108:7851:15709#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:85:10445:1329#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.9888888888888889 --------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:49:17701:20488#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 0.9787234042553191 ----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:115:19601:4276#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9777777777777777 +------------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:29:13001:19024#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGT 0.9444444444444444 1.0 1.0 -------------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:18:7754:20236#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT 1.0 0.25 1.0 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:90:12859:17003#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.989010989010989 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:103:2511:6814#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:16:6262:3651#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTC 0.9411764705882353 0.75 0.9888888888888889 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:50:6541:15325#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:19:8871:6559#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9891304347826086 @@ -296,13 +372,17 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:107:17659:20457#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.989247311827957 ------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:106:2685:2812#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.978494623655914 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:22:18897:12772#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +--------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:53:9228:6974#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTGTTTTTTATTGCGAAGTAGGTGGTTTGT 1.0 0.3333333333333333 0.978494623655914 -------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:38:15952:5794#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTTTG 0.9444444444444444 0.0 0.9893617021276596 ------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:56:9108:9769#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9891304347826086 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:72:2425:6509#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGGAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9782608695652174 ------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:115:10651:13041#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGTTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 0.9891304347826086 ------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:106:19752:14847#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:20:4212:17390#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 -------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:94:3257:7340#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:33:5776:9400#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATCTGTT 0.9444444444444444 0.0 1.0 -----------------------**---------------------------------------------------@@-------**-------@ HWUSI-EAS149L_0095_FC:1:23:7510:12488#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTC 1.0 0.5 0.989010989010989 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:118:14160:4917#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:42:13444:9357#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.9891304347826086 -------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:29:16442:16813#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:119:7949:4251#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 @@ -311,6 +391,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:93:5160:17395#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTTTG 0.9444444444444444 0.0 0.978494623655914 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:53:9340:9905#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:59:15566:20958#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:31:13230:11014#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9891304347826086 --------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:39:17539:11038#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGTAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 0.9894736842105263 -----------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:49:14462:19519#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 -----------------------------------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:2:9047:16847#0/1 ATATTTTTAATGAGGGAGGAGGTTAGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTCATTTGTT 1.0 0.0 0.978494623655914 @@ -319,11 +400,14 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:72:3655:14965#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTACTTTTTATTGCGAAGTAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 0.9891304347826086 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:38:12828:5706#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:100:5448:1789#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9777777777777777 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:105:12196:15923#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:21:15175:2955#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:51:7737:10019#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989247311827957 --------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:27:3682:14219#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 0.9893617021276596 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:67:5741:17197#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -----------------------@@---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:106:2569:2009#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTT 0.9444444444444444 0.25 0.989010989010989 --------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:11:9886:11287#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGGGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9787234042553191 +------------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:2:18641:11188#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.3333333333333333 0.978021978021978 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:72:11324:11120#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9894736842105263 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:90:9750:11542#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCT 0.9444444444444444 0.0 0.9891304347826086 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:113:3251:11964#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGAATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.978494623655914 @@ -333,28 +417,37 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:119:16585:16052#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTC 0.9444444444444444 0.25 0.989010989010989 ------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:33:15712:16498#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 -----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:107:2911:2621#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTTCG 0.9444444444444444 0.75 1.0 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:6:16152:3252#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 --------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:111:13164:3213#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:8:6105:7585#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATCTGTTT 0.9411764705882353 0.5 1.0 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:102:1375:14472#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989247311827957 --------------------------**---------------------------------------------------@@-------**-------@@ HWUSI-EAS149L_0095_FC:1:103:8312:5333#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTCG 1.0 0.5 1.0 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:22:19584:14824#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9411764705882353 0.0 0.9887640449438202 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:112:14054:12476#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:104:17850:5243#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989010989010989 -------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:71:11152:3132#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9893617021276596 -------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:40:14731:16181#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:50:9385:7170#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGGTTTGT 1.0 0.6666666666666666 0.9891304347826086 --------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:31:10306:2199#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:119:15514:10453#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9782608695652174 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:3:15025:3872#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 1.0 +----------------------**---------------------------------------------------**--------------- HWUSI-EAS149L_0095_FC:1:116:8272:13490#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGAAATTTGT 1.0 0.0 0.9777777777777777 +----------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:29:19279:7711#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9887640449438202 --------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:58:6975:17154#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:31:14331:21228#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:97:13666:13471#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.989010989010989 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:54:8251:3089#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:31:13888:4551#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG 1.0 0.0 1.0 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:30:15386:1114#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTCATTTGTTTG 1.0 0.0 0.9894736842105263 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:22:10539:21301#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:42:9056:6124#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 --------------------------@@---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:47:3456:5888#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCT 0.9444444444444444 0.3333333333333333 0.9787234042553191 ------------------------@@---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:90:13396:13441#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 1.0 0.5 1.0 -------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:119:12066:16144#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGACGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 0.9893617021276596 ----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:80:12921:12995#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:5:13645:18270#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.978494623655914 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:116:18879:15094#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:57:7044:1075#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:70:9058:1995#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9891304347826086 -------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:66:18509:15120#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 1.0 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:101:8657:6838#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 1.0 @@ -362,6 +455,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------@@---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:110:13834:16506#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9777777777777777 ------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:110:1524:13706#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:69:6315:13539#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:120:12153:2594#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ----------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:52:13664:17037#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:115:4259:6179#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:32:6441:11392#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 1.0 @@ -371,13 +465,18 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:69:12194:6802#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:21:6037:12663#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9893617021276596 ------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:62:14612:2841#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.989247311827957 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:89:17998:9449#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGC 0.9444444444444444 0.0 0.989010989010989 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:27:13433:7049#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:16:3862:2747#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTCTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 0.9893617021276596 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:33:12753:11382#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@----------------** HWUSI-EAS149L_0095_FC:1:1:3305:4686#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGGCATTTGTTTG 1.0 0.3333333333333333 0.9787234042553191 ----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:29:8477:13177#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9888888888888889 ------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:31:17149:10996#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:107:9389:7926#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTATT 0.9444444444444444 0.6666666666666666 0.989010989010989 ----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:94:2665:19800#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9777777777777777 --------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:76:9862:10159#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTCG 0.9444444444444444 0.25 0.9894736842105263 +--------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:111:11199:8776#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989247311827957 +-------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:64:3406:8819#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9891304347826086 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:19:4192:10756#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9893617021276596 ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:15:3380:5778#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 ----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:5:14682:16114#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9411764705882353 0.5 0.989010989010989 @@ -399,60 +498,86 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se --------------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:111:16956:12364#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGCTT 0.9444444444444444 0.25 1.0 ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:64:18699:11442#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989010989010989 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:47:15426:3950#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:91:2889:7279#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 --------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:85:16489:20693#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.9894736842105263 --------------------------@@---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:38:3414:16222#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9893617021276596 -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:49:3663:10350#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATCTGTTC 0.9444444444444444 0.25 1.0 -----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:119:5747:19584#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:73:9072:18632#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:50:12130:2345#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:61:3543:20032#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 -----------------------**---------------------------------------------------@@-------**-------@@ HWUSI-EAS149L_0095_FC:1:40:18130:17162#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTCG 1.0 0.5 0.9891304347826086 -------------------------@@---------------------------------------------------**-------@@------- HWUSI-EAS149L_0095_FC:1:120:7709:20949#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:113:3071:19281#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9893617021276596 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:2:12991:6734#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 -----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:63:5420:6533#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 ------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:95:2063:19150#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 1.0 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:38:13297:17612#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTT 0.9411764705882353 0.0 0.9888888888888889 ------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:21:1888:8890#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 ----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:105:9111:15026#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9888888888888889 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:49:15646:10176#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +-----------------------@@---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:18:9720:20109#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.6666666666666666 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:52:10104:16958#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:39:5608:10049#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -------------------------@@---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:1:17458:13141#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAACGTTTATTTTTTATTGTGAAGTAGGTTATTTGTTTG 1.0 0.25 0.9787234042553191 -------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:26:2209:19040#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:23:7460:15072#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 -----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:120:5180:5177#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 --------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:43:7396:16925#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 ----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:30:7231:6525#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9888888888888889 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:52:17444:5169#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGGAGTAGGTAATTTGTTTG 1.0 0.0 0.9789473684210527 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:36:5399:2910#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGCTTG 0.9444444444444444 0.5 1.0 +-------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:46:4452:17142#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 ----------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:16:17379:14991#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:40:11457:3917#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:47:2522:10751#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGGAGGAGGCGATTTGT 1.0 0.6666666666666666 0.9662921348314607 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:117:14054:9820#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 0.9891304347826086 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:79:18653:14901#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTACGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.989010989010989 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:33:19020:3875#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 +-----------------------**---------------------------------------------------**-------@@------ HWUSI-EAS149L_0095_FC:1:111:1779:3962#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT 0.9444444444444444 0.3333333333333333 1.0 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:33:4188:18202#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:28:10967:19498#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.9891304347826086 ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:93:11029:16359#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTTTG 0.9411764705882353 0.0 0.989010989010989 +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:80:19322:12804#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT 1.0 0.0 1.0 ----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:48:18854:18813#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGCT 0.9411764705882353 0.3333333333333333 0.9888888888888889 +-------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:67:15937:14264#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATCTGT 0.9444444444444444 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@-------**-------@ HWUSI-EAS149L_0095_FC:1:61:7030:12215#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTC 1.0 0.5 0.9893617021276596 --------------------------@@---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:85:12586:16821#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9893617021276596 ------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:9:17478:4682#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9891304347826086 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:27:2071:8097#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:97:2317:4178#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:101:17935:11346#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 ----------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:18:2403:16530#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGCTT 0.9411764705882353 0.25 1.0 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:19:5022:20573#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:83:7794:16714#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNTGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTTT 0.9444444444444444 0.5 0.978494623655914 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:6457:3262#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:92:8096:1489#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 +--------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:17:11652:4598#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCAATTTGT 1.0 0.6666666666666666 0.989247311827957 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:71:3960:4319#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:16:16481:3935#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTGTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9782608695652174 --------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:6:16457:13742#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.9894736842105263 ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:84:6547:11792#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGATGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.9888888888888889 ----------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:21:11836:12058#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT 1.0 0.25 1.0 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:66:7005:16340#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:62:5433:14061#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 1.0 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:27:16313:13260#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.9891304347826086 --------------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:93:10287:20060#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 --------------------------@@---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:63:9851:6144#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATCTGTTT 0.9444444444444444 0.75 1.0 +----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:67:9082:11058#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:36:13890:14059#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT 0.9411764705882353 0.6666666666666666 0.9887640449438202 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:79:5201:2073#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 1.0 --------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:54:3133:4712#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9893617021276596 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:117:5337:19361#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.989010989010989 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:109:12003:4813#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989010989010989 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:51:10894:10721#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTTC 0.9411764705882353 0.75 1.0 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:52:16848:1117#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 --------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:61:6258:16105#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTC 0.9444444444444444 0.75 1.0 -------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:51:9210:17279#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTTG 0.9444444444444444 0.0 0.9893617021276596 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:83:1846:2116#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9888888888888889 ------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:82:12251:13902#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTTG 1.0 0.25 0.978494623655914 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:107:12689:3335#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:67:4939:3237#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 +--------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:52:5349:8871#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAACTTGT 0.9444444444444444 0.3333333333333333 0.989247311827957 -------------------------@@---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:102:7976:5346#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.75 1.0 -------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:50:6292:12085#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9893617021276596 --------------------------**---------------------------------------------------@@-------**-------@ HWUSI-EAS149L_0095_FC:1:9:19232:11313#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGTTC 0.9444444444444444 0.5 1.0 @@ -463,6 +588,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:89:13949:15582#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG 1.0 0.0 1.0 ------------------------**---------------------------------------------------**-------@@------- HWUSI-EAS149L_0095_FC:1:66:13198:3730#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTT 1.0 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@---------------- HWUSI-EAS149L_0095_FC:1:27:8882:14394#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGCGAAGGAGGAGATTTGTT 1.0 0.5 0.968421052631579 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:18:13018:3685#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 -------------------------**---------------------------------------------------@@-------**-------@@ HWUSI-EAS149L_0095_FC:1:1:19700:1397#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTCATTTGTTCG 1.0 0.5 0.9893617021276596 ------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:95:11758:20077#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 1.0 0.25 1.0 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:120:5345:9252#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 @@ -471,21 +597,26 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:36:10260:9777#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATCGCGAAGTAGGTGATTTGTTTG 1.0 0.25 0.9787234042553191 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:76:11398:13587#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTACGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTTTG 0.9444444444444444 0.0 0.978494623655914 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:80:7474:11931#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9891304347826086 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:10823:9201#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:69:6439:8653#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------@@-------** HWUSI-EAS149L_0095_FC:1:38:18288:8052#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTTTG 1.0 0.25 1.0 ------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:13:14984:4205#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 1.0 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:34:1223:11481#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.9891304347826086 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:34:10859:19560#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:82:5943:14912#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.978021978021978 --------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:36:16668:17926#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGACAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTT 1.0 0.0 0.9893617021276596 +-----------------------**---------------------------------------------------**-------@@------ HWUSI-EAS149L_0095_FC:1:94:14634:6875#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT 0.9444444444444444 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:112:1958:7414#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:76:12490:9670#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGACGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.989010989010989 --------------------------@@---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:106:10305:14184#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTTG 1.0 0.5 0.9894736842105263 ----------------------**---------------------------------------------------@@----------------** HWUSI-EAS149L_0095_FC:1:57:4795:19503#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGATTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGGGATTTGTTTG 1.0 0.3333333333333333 0.9782608695652174 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:33:16847:14881#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9894736842105263 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:20:7392:9880#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:34:11217:11624#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:39:8355:2852#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989010989010989 ----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:50:4205:7323#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9888888888888889 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:34:18567:11507#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.989247311827957 +-----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:116:15058:9492#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGGTTTGT 1.0 0.3333333333333333 0.9888888888888889 --------------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:80:7991:7229#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:106:12097:13856#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.9893617021276596 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:80:11273:10873#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 1.0 @@ -494,6 +625,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:103:16764:8490#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989010989010989 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:92:19311:19515#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:2:19209:12239#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.989247311827957 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:4:9107:19260#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGTTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9777777777777777 --------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:75:5744:4950#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 1.0 0.25 1.0 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:52:9021:6412#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 ----------------------------------------------------------------------------**-------@@-------@ HWUSI-EAS149L_0095_FC:1:77:5343:14698#0/1 TATTTTTAATGAGGGAGGAGGTTAGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTTC 1.0 0.6666666666666666 0.9782608695652174 @@ -502,5 +634,8 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se --------------------------**---------------------------------------------------**-------@@-------** HWUSI-EAS149L_0095_FC:1:23:3163:2799#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTTTG 1.0 0.25 0.9894736842105263 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:90:8752:16528#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9894736842105263 ----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:31:9697:8933#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTT 1.0 0.0 1.0 +----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:103:19349:6942#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 +------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:70:12921:5624#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989010989010989 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:25:3221:7590#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:42:6875:13793#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:120:16758:12213#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 diff --git a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.filtered.txt b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.filtered.txt index 4cdf7f4..1c47ecc 100644 --- a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.filtered.txt +++ b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.filtered.txt @@ -1,7 +1,5 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate sequenceIdentity --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:32:14975:14119#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGCAGGTAATTTGT 0.8888888888888888 0.0 0.9891304347826086 ------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:73:9326:13034#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGTGATTTG 0.8823529411764706 0.3333333333333333 1.0 --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:86:19255:9841#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGC 0.8888888888888888 0.0 0.9782608695652174 ------------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:39:15226:14145#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATCTG 0.8823529411764706 1.0 1.0 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:35:3892:16175#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTG 0.8823529411764706 0.0 0.9775280898876404 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:113:4122:14966#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTG 0.8823529411764706 0.0 0.9888888888888889 diff --git a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.txt b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.txt index 7cee45a..221d5e1 100644 --- a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.txt +++ b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_CpGBounded.txt @@ -2,192 +2,93 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:41:18716:16092#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9886363636363636 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:50:10679:2420#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTG 0.9411764705882353 0.0 0.9891304347826086 ----------------------**---------------------------------------------------@@-------------- HWUSI-EAS149L_0095_FC:1:1:5263:7689#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGGTATTTG 1.0 0.5 0.9775280898876404 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:77:15843:7025#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGGTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.978021978021978 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:110:13124:3050#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTG 0.9411764705882353 0.0 0.9891304347826086 ---------------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:92:11236:12432#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 1.0 1.0 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:23:18788:10690#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9891304347826086 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:50:17539:10710#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ----------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:73:3668:9734#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATCTG 0.9375 1.0 1.0 -----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:104:13024:10013#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9887640449438202 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:14182:3401#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGCAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:23:3544:17576#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:68:7798:14690#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:21:12398:11200#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:48:13283:5382#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:5:4717:10585#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9886363636363636 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:59:6673:8547#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:1:10244:15506#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9775280898876404 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:114:1524:5369#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATATGT 1.0 0.6666666666666666 0.9891304347826086 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:10309:18134#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 -----------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:66:16117:19233#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGCGAAGTAGGCGATCTG 0.9411764705882353 1.0 0.9887640449438202 -------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:29:4284:15142#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTGT 0.9444444444444444 0.3333333333333333 1.0 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:106:9329:13047#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:10999:18048#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:26:5432:2528#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTG 0.9411764705882353 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:71:18108:10304#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:35:7916:15828#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:37:17637:8223#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9888888888888889 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:85:12165:18439#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9888888888888889 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:34:9290:2499#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:21:15777:12532#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.989010989010989 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:57:8890:17286#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:103:9126:5944#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 ----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:13:5299:19969#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTG 0.9375 0.3333333333333333 1.0 --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:15:6344:17401#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9891304347826086 --------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:22:5350:6147#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:12:4425:10017#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:64:13719:6381#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 ---------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:82:19792:14707#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 0.989247311827957 -----------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:59:11197:14029#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTACGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT 0.9411764705882353 0.3333333333333333 0.9775280898876404 --------------------------**---------------------------------------------------@@-------------- HWUSI-EAS149L_0095_FC:1:4:3721:8929#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTCTTATTGCGAAGTAGGGGATTTG 0.9444444444444444 0.5 0.978494623655914 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:100:5200:10879#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:53:12802:19448#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9888888888888889 -----------------------**---------------------------------------------------**-------@@----- HWUSI-EAS149L_0095_FC:1:69:19606:14436#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTG 1.0 0.3333333333333333 0.9887640449438202 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:83:7133:6964#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNTGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9777777777777777 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:59:12278:2294#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9887640449438202 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:6:3665:7171#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9887640449438202 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:107:6621:2198#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:106:15461:2802#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9886363636363636 -------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:62:10244:20413#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.989010989010989 ---------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:39:13143:15426#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:31:12358:15175#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9886363636363636 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:106:15084:11883#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:103:2628:10191#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:17:8838:1875#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:102:5313:18932#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT 1.0 0.0 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:34:10051:2459#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------@@----- HWUSI-EAS149L_0095_FC:1:18:6066:10447#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTG 1.0 0.3333333333333333 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:77:3732:14626#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:102:11220:1600#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT 0.9444444444444444 0.0 0.978494623655914 ------------------------**---------------------------------------------------**-------@@----- HWUSI-EAS149L_0095_FC:1:22:11589:7115#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTG 1.0 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:89:4923:19956#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9891304347826086 -------------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:64:9015:5464#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989010989010989 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:80:17517:14963#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:39:4650:10479#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 1.0 1.0 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:54:4965:8189#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGGAGTAGGTAATTTGT 1.0 0.0 0.978494623655914 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:43:13447:1806#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:59:4720:3310#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ---------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:66:2125:10585#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:4:9785:14963#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9772727272727273 --------------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:106:6179:11721#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 1.0 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:25:13778:17411#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATCGCGAAGCAGGCGATTTGT 0.9444444444444444 0.6666666666666666 0.989010989010989 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:58:12435:12677#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:45:12653:3333#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9782608695652174 ------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:76:5187:19457#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTGTGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 0.9888888888888889 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:92:11327:11493#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT 0.9411764705882353 0.0 0.9887640449438202 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:86:4883:9283#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGATAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9772727272727273 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:5:15737:20008#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.978494623655914 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:79:4491:3136#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTACGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9782608695652174 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:91:8644:7694#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:5:6704:5793#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9775280898876404 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:69:11702:15456#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTG 0.9411764705882353 0.6666666666666666 1.0 ---------------------------@@---------------------------------------------------**-------@@------ HWUSI-EAS149L_0095_FC:1:30:5197:5711#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGT 1.0 0.6666666666666666 0.989247311827957 -----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:101:9016:4251#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGT 0.9411764705882353 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:33:11901:2396#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:102:8585:12687#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:45:15091:4983#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:115:11692:8909#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG 0.9411764705882353 0.0 0.9887640449438202 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:33:9514:5682#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:27:14240:16451#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:86:9386:5659#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.978021978021978 --------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:108:7526:15001#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:90:6730:7759#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:79:6994:20980#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTATGAAGTAGGTAATTTG 1.0 0.0 0.978021978021978 --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:44:4202:7452#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9891304347826086 ----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:88:10315:19653#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9772727272727273 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:3:12922:5118#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 -------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:51:18994:19283#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTG 0.9411764705882353 0.0 0.989010989010989 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:43:11257:5282#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9888888888888889 -----------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:4:18175:20380#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATCTGT 0.9411764705882353 1.0 0.9887640449438202 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:82:1925:5422#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTAATTTTTATTGCGAAGCAGGCGATTTGT 0.9411764705882353 0.6666666666666666 0.9775280898876404 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:43:7034:13767#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:118:18342:9854#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTATGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9777777777777777 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:14:11753:5243#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAACTTGT 0.9444444444444444 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:70:3228:15885#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:113:15880:14296#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAGGTAGGCGATTTG 1.0 0.6666666666666666 0.9887640449438202 ---------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:28:5771:16612#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.989247311827957 -----------------------@@---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:34:3569:3441#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9887640449438202 -------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:111:8817:8723#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.989010989010989 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:18:18887:6369#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 ------------------------@@---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:113:9028:13236#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.6666666666666666 0.9888888888888889 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:31:15406:19134#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATCGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9782608695652174 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:19:15114:7938#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTG 0.9411764705882353 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:63:6489:5999#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGCGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 0.9891304347826086 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:56:9413:14341#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 --------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:109:2145:2574#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 0.9444444444444444 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:99:16079:18603#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTG 0.9411764705882353 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:43:16298:11550#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:44:19095:13268#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:6:6320:9556#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:114:13733:11173#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT 0.9411764705882353 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:120:19429:11309#0/1 ATATTTTTAATGAGGGAGGAGGTTTGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9777777777777777 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:16:18887:5717#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTNTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9782608695652174 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:65:16528:3052#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9887640449438202 --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:42:17960:8689#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9891304347826086 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:72:1618:18551#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:107:9214:10845#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:107:16130:14905#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:6:17971:16051#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9891304347826086 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:56:10923:1862#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTG 0.9411764705882353 0.0 0.9891304347826086 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:1:19017:11869#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9886363636363636 ------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:84:2010:19781#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGGAGGTGATTTG 1.0 0.3333333333333333 0.9888888888888889 ------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:9:4354:18324#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGGAGTAGGTGATATGT 0.9444444444444444 0.3333333333333333 0.9777777777777777 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:10:17906:8553#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:38:6357:9946#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT 1.0 0.0 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:31:5478:14639#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:69:4798:7601#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ---------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:61:5516:2993#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.989247311827957 ------------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:94:10019:10450#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 1.0 1.0 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:59:4111:2084#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 ----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:102:10740:17228#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 ------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:109:9459:16055#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATCTG 0.9411764705882353 0.3333333333333333 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:57:19080:15132#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:91:4374:15473#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.978021978021978 ----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:56:3519:17256#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 -----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:37:17848:8896#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9887640449438202 -----------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:101:18225:15779#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAGGTAGGCGATTTG 1.0 1.0 0.9775280898876404 ----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:68:5903:3079#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 -------------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:29:13001:19024#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGT 0.9444444444444444 1.0 1.0 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:103:2511:6814#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:6:5807:9140#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9888888888888889 -----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:22:10197:14474#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 0.9887640449438202 ---------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:53:9228:6974#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTGTTTTTTATTGCGAAGTAGGTGGTTTGT 1.0 0.3333333333333333 0.978494623655914 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:72:2425:6509#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGGAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9782608695652174 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:20:4212:17390#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:118:14160:4917#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:85:18363:8381#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9888888888888889 --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:31:13230:11014#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9891304347826086 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:84:8516:17952#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:117:12302:14767#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.989010989010989 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:105:12196:15923#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:67:5741:17197#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -------------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:2:18641:11188#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.3333333333333333 0.978021978021978 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:39:8702:20480#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 -------------------------@@---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:29:18868:4640#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.989010989010989 -----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:62:2336:12324#0/1 TATTTTTAATGAGGGAGGAGGTTTGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 0.9887640449438202 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:53:18192:11474#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTAATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9886363636363636 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:6:16152:3252#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:106:19493:14466#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTG 1.0 0.0 1.0 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:22:19584:14824#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9411764705882353 0.0 0.9887640449438202 ------------------------@@---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:18:7583:13173#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9888888888888889 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:106:13786:9519#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9886363636363636 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:50:9385:7170#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGGTTTGT 1.0 0.6666666666666666 0.9891304347826086 -----------------------**---------------------------------------------------**--------------- HWUSI-EAS149L_0095_FC:1:116:8272:13490#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGAAATTTGT 1.0 0.0 0.9777777777777777 -----------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:29:19279:7711#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9887640449438202 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:70:11874:5641#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:54:8251:3089#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:22:10539:21301#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:61:5219:13579#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:116:18879:15094#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:57:7044:1075#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:43:15250:21194#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9891304347826086 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:120:12153:2594#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:103:10383:13152#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:89:17998:9449#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGC 0.9444444444444444 0.0 0.989010989010989 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:27:13433:7049#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:33:12753:11382#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ---------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:111:11199:8776#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989247311827957 --------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:64:3406:8819#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9891304347826086 -------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:14:4697:7599#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTAATTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.978021978021978 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:35:15806:4243#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGATAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.989010989010989 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:32:7493:6543#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9777777777777777 @@ -196,69 +97,33 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:15:13384:4055#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9886363636363636 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:101:8182:7471#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9888888888888889 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:38:8898:12120#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG 0.9375 0.0 0.9886363636363636 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:91:2889:7279#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:108:2511:9867#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:50:12130:2345#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:49:7094:18917#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9772727272727273 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:2:12991:6734#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 ------------------------@@---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:18:9720:20109#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.6666666666666666 0.9888888888888889 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:23:7460:15072#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:26:15173:1410#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9777777777777777 --------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:46:4452:17142#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 -------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:116:5324:7064#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.989010989010989 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:40:11457:3917#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:77:18168:16979#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGGTTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9886363636363636 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:47:2522:10751#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGGAGGAGGCGATTTGT 1.0 0.6666666666666666 0.9662921348314607 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:33:19020:3875#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------@@------ HWUSI-EAS149L_0095_FC:1:111:1779:3962#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT 0.9444444444444444 0.3333333333333333 1.0 -----------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:33:11136:11732#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGCTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 1.0 0.9775280898876404 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:56:5480:13168#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTG 1.0 0.0 1.0 --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:80:19322:12804#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT 1.0 0.0 1.0 --------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:67:15937:14264#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATCTGT 0.9444444444444444 0.3333333333333333 1.0 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:32:9249:2282#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9887640449438202 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:27:2071:8097#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:54:18704:4246#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG 0.9411764705882353 0.0 0.989010989010989 ----------------------@@---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:58:5257:4508#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTG 0.9375 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:35:6003:5011#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:19:5022:20573#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -----------------------@@---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:58:13494:10638#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9887640449438202 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:26:15138:1886#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTG 0.9375 0.6666666666666666 0.9886363636363636 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:3:13447:10439#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:6457:3262#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:92:8096:1489#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 ---------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:17:11652:4598#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCAATTTGT 1.0 0.6666666666666666 0.989247311827957 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:21:7848:13698#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9891304347826086 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:71:3960:4319#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:35:11029:16456#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9888888888888889 ------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:114:12170:10992#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:66:7005:16340#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:98:9949:10066#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9782608695652174 -----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:67:9082:11058#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:36:13890:14059#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT 0.9411764705882353 0.6666666666666666 0.9887640449438202 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:52:16848:1117#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:83:1846:2116#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9888888888888889 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:107:12689:3335#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:67:4939:3237#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ---------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:52:5349:8871#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAACTTGT 0.9444444444444444 0.3333333333333333 0.989247311827957 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:109:13940:20846#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 0.9411764705882353 0.0 0.9887640449438202 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:50:3987:12525#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9891304347826086 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:18:13018:3685#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:37:19558:18369#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCTGGTAATTTG 0.9411764705882353 0.3333333333333333 0.9782608695652174 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:10823:9201#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:69:6439:8653#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 --------------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:40:17857:19275#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 1.0 1.0 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:66:3990:11032#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTG 0.9411764705882353 0.0 0.9887640449438202 --------------------------**---------------------------------------------------**-------@@----- HWUSI-EAS149L_0095_FC:1:56:9665:10172#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTG 0.9411764705882353 0.3333333333333333 1.0 ------------------------**---------------------------------------------------**-------@@------ HWUSI-EAS149L_0095_FC:1:94:14634:6875#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT 0.9444444444444444 0.3333333333333333 1.0 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:34:11217:11624#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 ------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:116:15058:9492#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGGTTTGT 1.0 0.3333333333333333 0.9888888888888889 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:33:13042:3193#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9888888888888889 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:4:9107:19260#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGTTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9777777777777777 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:35:10464:4522#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGACAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.989010989010989 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:58:4104:15536#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9887640449438202 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:111:4850:20696#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG 0.9411764705882353 0.0 0.9888888888888889 -----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:103:19349:6942#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 -------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:70:12921:5624#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989010989010989 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:25:3221:7590#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:34:3615:18454#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 -------------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:118:17634:13195#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 1.0 1.0 diff --git a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_MethylationWithSNP.txt b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_MethylationWithSNP.txt index 6b3a9c6..a0d8415 100644 --- a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_MethylationWithSNP.txt +++ b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_MethylationWithSNP.txt @@ -1,4 +1,4 @@ MethylationWithSNP count percentage MethylParent -CGAGGATGGCTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTCCCACTGCGAAGCAGGCGACCTGCT ref -**---------------------------------------------------**-------*A------- 174 0.344554 0 -**---------------------------------------------------@@-------@@------- 189 0.374257 1 +CGAGGATGGCTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTCCCACTGCGAAGCAGGCGACCTGC ref +**---------------------------------------------------**-------*A------ 221 0.345313 0 +**---------------------------------------------------@@-------@@------ 237 0.370313 1 diff --git a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_report.txt b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_report.txt index eed16ca..2d084e9 100644 --- a/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_report.txt +++ b/BSPAT/testFiles/experiment1/LOC440034_bismark.analysis_report.txt @@ -1,11 +1,11 @@ target region start position: 31 -target region length: 71 +target region length: 70 Bisulfite conversion rate threshold: 0.9 Sequence identity threshold: 0.9 -A. Sequences cover whole target region: 521 -A. After quality control: 505 -B. Sequences don't cover whole target but cover all CpGs: 269 -B. After quality control: 263 +A. Sequences cover whole target region: 658 +A. After quality control: 640 +B. Sequences don't cover whole target but cover all CpGs: 132 +B. After quality control: 128 C. Sequences cover neither target nor all CpGs: 3 methylation rate for each CpG site: pos rate @@ -83,4 +83,3 @@ mismatch stat: 68 ref:T A:0 C:0 G:0 T:0 N:0 total: 0 coverage:768 69 ref:G A:1 C:0 G:0 T:0 N:0 total: 1 coverage:768 70 ref:C A:0 C:0 G:2 T:0 N:0 total: 2 coverage:640 -71 ref:T A:0 C:2 G:0 T:0 N:0 total: 2 coverage:505 diff --git a/BSPAT/testFiles/experiment1/pics/LOC440034_ASM.bed b/BSPAT/testFiles/experiment1/pics/LOC440034_ASM.bed index 4ecc84e..40cae3a 100644 --- a/BSPAT/testFiles/experiment1/pics/LOC440034_ASM.bed +++ b/BSPAT/testFiles/experiment1/pics/LOC440034_ASM.bed @@ -1,13 +1,13 @@ -browser position chr11:31794641-31794711 +browser position chr11:31794641-31794710 browser hide all track name="PatternA" description="experiment1-LOC440034-ASM" visibility=1 itemRgb="On" -chr11 31794640 31794711 refbar 0 + 31794640 31794640 0,0,0 -chr11 31794693 31794695 CG-PatternA 251 + 31794693 31794695 255,41,0 -chr11 31794702 31794704 CG-PatternA 212 + 31794702 31794704 255,111,0 -chr11 31794640 31794642 CG-PatternA 20 + 31794640 31794642 37,255,0 +chr11 31794640 31794710 refbar 0 + 31794640 31794640 0,0,0 +chr11 31794693 31794695 CG-PatternA 317 + 31794693 31794695 255,40,0 +chr11 31794702 31794704 CG-PatternA 266 + 31794702 31794704 255,113,0 +chr11 31794640 31794642 CG-PatternA 24 + 31794640 31794642 35,255,0 track name="PatternB" description="experiment1-LOC440034-ASM" visibility=1 itemRgb="On" -chr11 31794640 31794711 refbar 0 + 31794640 31794640 0,0,0 -chr11 31794693 31794695 CG-PatternB 35 + 31794693 31794695 77,255,0 -chr11 31794702 31794704 CG-PatternB 5 + 31794702 31794704 11,255,0 -chr11 31794640 31794642 CG-PatternB 24 + 31794640 31794642 53,255,0 +chr11 31794640 31794710 refbar 0 + 31794640 31794640 0,0,0 +chr11 31794693 31794695 CG-PatternB 46 + 31794693 31794695 79,255,0 +chr11 31794702 31794704 CG-PatternB 7 + 31794702 31794704 12,255,0 +chr11 31794640 31794642 CG-PatternB 31 + 31794640 31794642 53,255,0 chr11 31794703 31794704 SNP-Pattern0 1000 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z4N3x`bD?6@tZ1bFmVxi){Jq%``y5;$M>!H-ULO`JC$N}S?yYjBcD@j!o*0rv->(C^7C zMy)t7E-8}T{9L3MKTfNe<){^xzHIH2wcgDU1AD+j4%mG-n49@Pgk0b%KLA(?2G>0W ze;>q!`4s}1DoYH|MZwYk(g1OQRt2C1pBqm;Q-E^!Heu}{Ga*=+kKP;9T23w&UsP5w z&;p|cSXH1hqoHVWioF21P<(=ztafwIiar(DK~y^js*gRWrAsdM94{&scLM8wt2dWh z*+Z*GNk*3yE^4*&d!T=vkjNgy{U><7CgK~+|K|q;5c)n*%Itlkq&)xoQ)MQ*%Jcu0 zsGh5Azv6#U6{#fEeqQt}BuIPw@a`{t;O_p1$J0lK(qE|Dg1bUd&Ybcd43r`2R}P_e#oC ee&fE4RM+?8?#NF6<-Nc~XwNPed)f~Fq<;gl3uPSu diff --git a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.filtered.txt b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.filtered.txt index 8727c76..814739c 100644 --- a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.filtered.txt +++ b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.filtered.txt @@ -1,4 +1,5 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate sequenceIdentity +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:32:14975:14119#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGCAGGTAATTTGT 0.8888888888888888 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:45:8236:15678#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTTT 0.8888888888888888 0.0 0.989010989010989 ----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:100:17798:18841#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTTTTATTGCGAAGTAGGCAATCTGCTCG 0.6470588235294117 0.75 0.989010989010989 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:102:6429:20030#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTTTG 0.8888888888888888 0.0 0.9891304347826086 @@ -10,6 +11,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:108:11439:20961#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACCTTTTATTGCGAAGTAGGCAATCTGCT 0.6666666666666667 0.6666666666666666 0.978021978021978 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:3:13101:10743#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATCTGTT 0.8888888888888888 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:110:3817:10383#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGTTT 0.8888888888888888 0.5 1.0 +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:86:19255:9841#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGC 0.8888888888888888 0.0 0.9782608695652174 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:45:18827:9589#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTCTATTGTGAAGTAGGTGATTTGTTTG 0.8888888888888888 0.0 1.0 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:52:8098:9795#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTCTCATTGTGAAGTAGGTAATTTGTTT 0.8888888888888888 0.0 0.978021978021978 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:107:11427:9924#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTGGGTAATTTGTT 0.8888888888888888 0.0 0.9782608695652174 diff --git a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.txt b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.txt index 6f486a3..7617a6b 100644 --- a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.txt +++ b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis.txt @@ -1,15 +1,19 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate sequenceIdentity +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:77:15843:7025#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGGTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.978021978021978 --------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:118:10163:15066#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9893617021276596 --------------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:116:6513:3332#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT 1.0 0.25 1.0 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:64:6064:6301#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTT 0.9411764705882353 0.0 0.9888888888888889 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:50:3543:3982#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989010989010989 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:88:11663:11929#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:116:15786:14188#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 +--------------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:92:11236:12432#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 1.0 1.0 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:23:18788:10690#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9891304347826086 --------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:53:9039:17208#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 0.9444444444444444 0.25 1.0 --------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:31:8560:8037#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9893617021276596 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:34:9868:11675#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:52:5458:8979#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989247311827957 -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:99:17223:20202#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTTC 0.9444444444444444 0.25 0.989010989010989 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:14182:3401#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGCAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:98:15532:4743#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:84:16790:17928#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9782608695652174 ------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:17:1650:9020#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9891304347826086 @@ -24,17 +28,22 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:81:2126:2067#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTTG 0.9411764705882353 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:77:6882:19754#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTACGAAGTAGGCGATTTGTTT 1.0 0.5 0.989010989010989 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:113:4381:5459#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9789473684210527 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:23:3544:17576#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:112:6312:15491#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTT 0.9444444444444444 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:49:3280:12447#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGTGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:39:6051:10800#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:21:12398:11200#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:62:3955:15584#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9893617021276596 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:48:13283:5382#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:91:14478:9905#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTTG 1.0 0.25 0.9891304347826086 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:94:14114:5795#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989247311827957 ----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:52:10994:14701#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:108:12552:12456#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:114:1524:5369#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATATGT 1.0 0.6666666666666666 0.9891304347826086 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:99:14837:15848#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989247311827957 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:16:8110:19717#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTCTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 0.9888888888888889 ----------------------@@---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:35:12011:17252#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.6666666666666666 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:10309:18134#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:27:13188:14342#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 0.9444444444444444 0.0 0.9891304347826086 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:102:16057:2332#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:112:17479:5885#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 @@ -42,9 +51,11 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------@@---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:35:4236:2753#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.25 0.9888888888888889 ------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:107:5368:6505#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:56:13453:19173#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:29:4284:15142#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTGT 0.9444444444444444 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:74:18136:12428#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:110:10124:14725#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTT 0.9411764705882353 0.0 0.9888888888888889 --------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:91:7483:3209#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 1.0 0.25 1.0 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:10999:18048#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:23:6840:16272#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:59:18254:10338#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989247311827957 ------------------------**---------------------------------------------------**-------@@-------@ HWUSI-EAS149L_0095_FC:1:57:12398:14558#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTTC 1.0 0.5 1.0 @@ -52,44 +63,59 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:90:9282:21266#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGATGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.978494623655914 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:107:9537:19119#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCTT 0.9444444444444444 0.0 0.978021978021978 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:99:6620:7249#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTATATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.9891304347826086 +-----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:71:18108:10304#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:68:17784:10197#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG 1.0 0.0 0.989010989010989 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:35:7916:15828#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:1:17768:19822#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCAATTTGTT 1.0 0.6666666666666666 0.9893617021276596 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:55:15693:4569#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGGTTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTC 1.0 0.6666666666666666 0.967032967032967 ----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:48:9039:18168#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGGAGGCGATTTGTT 1.0 0.6666666666666666 0.9777777777777777 ------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:16:11867:10603#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTCTTTATTGTGAAGTAGGTAATTTGTTT 0.9444444444444444 0.0 0.9782608695652174 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:48:17585:2858#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989247311827957 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:34:9290:2499#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 --------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:104:5325:11721#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9893617021276596 -------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:44:8043:14275#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.9893617021276596 --------------------------**---------------------------------------------------@@-------**-------@@ HWUSI-EAS149L_0095_FC:1:117:4564:13275#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTCG 1.0 0.5 0.9894736842105263 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:87:17487:12523#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGATAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 0.9894736842105263 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:103:9126:5944#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 --------------------------@@---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:85:18603:20747#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.5 0.9789473684210527 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:25:16942:6712#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:15:6344:17401#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9891304347826086 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:32:7807:18666#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9782608695652174 -------------------------**------------------------------------------------------------@@-------@ HWUSI-EAS149L_0095_FC:1:3:3926:1960#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGAGAAGTAGGCGATTTGTTC 0.9473684210526316 0.6666666666666666 0.9893617021276596 +----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:12:4425:10017#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:111:12785:8648#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 0.9444444444444444 0.5 1.0 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:64:13719:6381#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 +--------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:82:19792:14707#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 0.989247311827957 +----------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:59:11197:14029#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTACGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT 0.9411764705882353 0.3333333333333333 0.9775280898876404 ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:31:18528:8852#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:44:16473:19066#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:100:5200:10879#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 +-----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:53:12802:19448#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9888888888888889 --------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:12:7760:2089#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGGAGGCGATTTGTTT 0.9444444444444444 0.5 0.9893617021276596 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:21:7388:10782#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:25:6921:1178#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989247311827957 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:102:6924:18007#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:40:13258:19735#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:100:16412:11948#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 0.9444444444444444 0.0 0.989247311827957 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:83:7133:6964#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNTGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9777777777777777 ----------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:14:12889:20037#0/1 AATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:92:4196:16829#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9893617021276596 -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:83:11888:14848#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.978021978021978 ----------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:14:7232:3562#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTT 1.0 0.25 0.9888888888888889 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:107:6621:2198#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:31:7080:12250#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGGTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 0.9787234042553191 ----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:79:19152:14336#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTTT 0.9411764705882353 0.0 0.9888888888888889 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:19:11388:19464#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9893617021276596 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:5:17159:6730#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTCATTGCGAAGTAGGCGATTTGTTC 0.9411764705882353 0.75 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:106:9708:2226#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 +--------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:39:13143:15426#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:50:1310:9879#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:119:11804:13266#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 -----------------------@@---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:13:1516:20049#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.5 0.9891304347826086 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:102:6228:10337#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.9891304347826086 ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:85:17498:15821#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.9888888888888889 -----------------------@@---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:111:8517:12412#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.25 0.989010989010989 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:103:2628:10191#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:62:5734:6699#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGTTTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9777777777777777 ----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:1:3421:8774#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:22:11293:1481#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 @@ -98,22 +124,32 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:70:5730:17725#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:9:16907:8644#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 ------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:61:10279:6054#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGCTC 0.9444444444444444 0.75 0.9891304347826086 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:102:5313:18932#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT 1.0 0.0 1.0 ------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:5:3085:18998#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 0.9891304347826086 --------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:92:4039:5825#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.9893617021276596 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:27:2732:17318#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9888888888888889 ------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:51:4585:10580#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTT 0.9444444444444444 0.0 0.9891304347826086 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:34:10051:2459#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:102:6454:8479#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:40:10856:18594#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9893617021276596 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:67:9458:5615#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:85:16848:3379#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 0.9893617021276596 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:77:3732:14626#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:101:6623:14752#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:44:14560:3192#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9891304347826086 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:102:11220:1600#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT 0.9444444444444444 0.0 0.978494623655914 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:93:9706:8567#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATCGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.978494623655914 +------------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:64:9015:5464#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989010989010989 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:15:7540:17757#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTCGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.978494623655914 +-----------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:39:4650:10479#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 1.0 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:54:4965:8189#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGGAGTAGGTAATTTGT 1.0 0.0 0.978494623655914 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:120:2881:8152#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTTT 0.9444444444444444 0.5 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:43:13447:1806#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:82:10039:4336#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9789473684210527 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:59:4720:3310#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:61:8545:16950#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 ----------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:90:18813:12713#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.989010989010989 +--------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:66:2125:10585#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:46:14736:4396#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9894736842105263 -----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:90:2874:15379#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 ----------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:70:2592:1500#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTTCG 0.9411764705882353 0.25 0.989010989010989 @@ -123,12 +159,15 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:40:8611:16197#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.978021978021978 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:25:12563:16716#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGCTTG 0.9444444444444444 0.5 1.0 ------------------------@@---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:70:12612:3362#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTT 1.0 0.5 0.9891304347826086 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:25:13778:17411#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATCGCGAAGCAGGCGATTTGT 0.9444444444444444 0.6666666666666666 0.989010989010989 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:58:12435:12677#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:91:8849:8265#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:21:13519:11772#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 -------------------------**---------------------------------------------------**-------@@-------@ HWUSI-EAS149L_0095_FC:1:26:9943:12912#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGGGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGTTC 0.9444444444444444 0.5 0.989247311827957 --------------------------**---------------------------------------------------@@-------**-------@ HWUSI-EAS149L_0095_FC:1:109:3432:9586#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTC 0.9444444444444444 0.5 1.0 --------------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:69:9410:8065#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAACTTGTTT 0.9444444444444444 0.25 0.9893617021276596 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:51:4164:14098#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989247311827957 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:92:11327:11493#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT 0.9411764705882353 0.0 0.9887640449438202 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:106:7276:11159#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------@@-------* HWUSI-EAS149L_0095_FC:1:66:11418:7696#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTTT 1.0 0.25 0.989010989010989 ------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:94:6925:11821#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9891304347826086 @@ -136,17 +175,23 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:92:6924:11221#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:88:19722:3591#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCTTG 0.9444444444444444 0.0 0.989247311827957 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:20:5553:11948#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:5:15737:20008#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.978494623655914 -----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:16:12993:10414#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTGTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.978021978021978 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:5:6704:5793#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9775280898876404 ----------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:116:15956:4732#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:101:15088:2959#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTCTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 0.9894736842105263 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:12:17583:1833#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 1.0 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:88:13953:13083#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +--------------------------@@---------------------------------------------------**-------@@------ HWUSI-EAS149L_0095_FC:1:30:5197:5711#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGT 1.0 0.6666666666666666 0.989247311827957 +----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:101:9016:4251#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGT 0.9411764705882353 0.3333333333333333 1.0 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:33:11901:2396#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:82:3041:2170#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.9789473684210527 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:84:2500:14136#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 ------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:23:8119:5446#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGGTT 0.9444444444444444 0.5 0.9891304347826086 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:85:17732:14091#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.978021978021978 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:84:18394:12081#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.989247311827957 -------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:30:9371:13789#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 0.9444444444444444 0.0 0.9893617021276596 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:45:15091:4983#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:94:11186:17000#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:120:7792:14002#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -------------------------@@---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:113:3486:16026#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.25 0.989247311827957 @@ -156,10 +201,12 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:19:6116:16506#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:52:5694:13346#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9888888888888889 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:65:11104:18884#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:27:14240:16451#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 ------------------------**---------------------------------------------------**-------@@-------* HWUSI-EAS149L_0095_FC:1:19:19717:18232#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGACTTGTTT 0.9444444444444444 0.25 1.0 -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:82:18090:17810#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.989010989010989 -------------------------**---------------------------------------------------**-------@@------- HWUSI-EAS149L_0095_FC:1:63:9973:16478#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTT 1.0 0.3333333333333333 0.978494623655914 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:84:5500:7681#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:86:9386:5659#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.978021978021978 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:91:11393:2881#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG 1.0 0.0 1.0 ----------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:13:15126:8131#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 -------------------------**---------------------------------------------------**-------@@------- HWUSI-EAS149L_0095_FC:1:20:10053:7014#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGCTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTT 1.0 0.3333333333333333 0.989247311827957 @@ -173,7 +220,9 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:94:12939:19620#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:64:15632:1870#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:71:5502:2228#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.989010989010989 +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:44:4202:7452#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9891304347826086 ------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:111:14249:10509#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTT 0.9444444444444444 0.5 1.0 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:3:12922:5118#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 ------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:84:12044:6359#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9891304347826086 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:39:18392:9057#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTCTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.9891304347826086 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:5:7040:17423#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.978021978021978 @@ -184,23 +233,29 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:13:13655:14338#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGCGATTTGTTCG 0.9411764705882353 0.75 1.0 --------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:107:7813:3462#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTCTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9787234042553191 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:99:15350:20472#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +----------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:4:18175:20380#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATCTGT 0.9411764705882353 1.0 0.9887640449438202 ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:119:14231:4902#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:28:15527:2892#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:82:1925:5422#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTAATTTTTATTGCGAAGCAGGCGATTTGT 0.9411764705882353 0.6666666666666666 0.9775280898876404 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:43:7034:13767#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:111:3742:7841#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989247311827957 --------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:54:11618:11257#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 0.9444444444444444 0.25 0.9893617021276596 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:40:2999:11441#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGGTTTGTTTG 1.0 0.5 0.9891304347826086 --------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:9:18755:18704#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9893617021276596 --------------------------@@---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:2:15790:11791#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.25 0.9787234042553191 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:61:13323:20465#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGTGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 0.9894736842105263 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:14:11753:5243#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAACTTGT 0.9444444444444444 0.0 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:53:15819:10255#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:46:12910:7602#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT 1.0 0.25 1.0 ----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:50:6284:15511#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:70:3228:15885#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 -------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:2:11563:4180#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 -----------------------@@---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:83:9753:13233#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 0.9444444444444444 0.5 0.978021978021978 ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:56:10809:9049#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTTT 0.9411764705882353 0.5 1.0 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:50:15021:9805#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGTGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 0.9787234042553191 --------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:88:14959:20003#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:107:13187:18513#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9891304347826086 +--------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:28:5771:16612#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.989247311827957 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:112:6478:19954#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:8:14427:17272#0/1 GAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 --------------------------@@---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:25:15960:2022#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9893617021276596 @@ -210,6 +265,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:53:17499:9298#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989247311827957 ----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:13:17165:17709#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGCTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9777777777777777 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:107:19094:11274#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.989247311827957 +-----------------------@@---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:113:9028:13236#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.6666666666666666 0.9888888888888889 --------------------------@@---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:52:12442:18539#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 1.0 1.0 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:38:17125:8917#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTT 1.0 0.0 1.0 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:44:18234:9205#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.989247311827957 @@ -220,12 +276,19 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:113:16595:14136#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 1.0 0.25 0.9891304347826086 ------------------------**---------------------------------------------------@@-------**-------@@ HWUSI-EAS149L_0095_FC:1:19:4022:11896#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTCG 1.0 0.5 0.989247311827957 ----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:67:9242:3190#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 +-------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:63:6489:5999#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGCGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 0.9891304347826086 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:16:14938:1949#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTNTTTATTGCGAAGCAGGCGATTTGTTTG 0.9444444444444444 0.5 0.9894736842105263 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:79:4216:15468#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTCTGAAGTAGGTAATTTGTT 1.0 0.0 0.9782608695652174 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:56:9413:14341#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 +-------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:109:2145:2574#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 0.9444444444444444 0.3333333333333333 1.0 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:43:16298:11550#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------**-------@ HWUSI-EAS149L_0095_FC:1:79:12871:20232#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTC 1.0 0.5 0.9891304347826086 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:44:19095:13268#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:14:12443:14734#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 ----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:53:7775:6334#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:6:6320:9556#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989010989010989 -----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:36:6468:12513#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGGGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 0.989010989010989 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:114:13733:11173#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT 0.9411764705882353 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:85:15347:11593#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.9888888888888889 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:28:7475:8171#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGCAGGTAATTTGTT 0.9444444444444444 0.0 0.989010989010989 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:5:17961:10326#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.989247311827957 @@ -237,7 +300,9 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:112:13666:18085#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTCGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.978021978021978 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:91:19012:17701#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:32:5769:16856#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAGGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.978021978021978 +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:42:17960:8689#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9891304347826086 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:9:12619:13908#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTTTG 0.9444444444444444 0.0 0.9894736842105263 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:72:1618:18551#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:13:1967:6417#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGATTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.989247311827957 --------------------------@@---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:111:17328:7398#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.6666666666666666 0.9893617021276596 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:9:3185:15386#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 0.9894736842105263 @@ -247,16 +312,23 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:90:16658:19315#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:115:13696:1814#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989247311827957 ----------------------@@---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:70:4495:9676#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 0.9411764705882353 0.3333333333333333 0.9888888888888889 +-----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:9:4354:18324#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGGAGTAGGTGATATGT 0.9444444444444444 0.3333333333333333 0.9777777777777777 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:61:16104:20243#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGGT 0.9444444444444444 0.6666666666666666 0.9891304347826086 ------------------------@@---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:54:5927:18218#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGTGGAGAAGGTTTATTTTTTTTTGCGAAGTAGGCGATTTGTTT 1.0 0.75 0.9782608695652174 -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:55:11992:13207#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.989010989010989 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:10:17906:8553#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:111:14889:9140#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 1.0 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:38:6357:9946#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT 1.0 0.0 1.0 --------------------------@@---------------------------------------------------@@-------**-------@ HWUSI-EAS149L_0095_FC:1:23:18719:15486#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGTGATTTGTTC 0.9444444444444444 0.75 1.0 --------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:114:17505:6886#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9893617021276596 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:31:5478:14639#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:69:4798:7601#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 +--------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:61:5516:2993#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.989247311827957 ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:94:10892:7222#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:19:11249:1874#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 1.0 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:58:14717:7603#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9893617021276596 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:120:13618:9629#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:59:4111:2084#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 -------------------------@@---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:47:11562:11584#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:58:11612:19627#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 1.0 0.25 1.0 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:90:14214:10122#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 @@ -269,6 +341,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:17:2103:11114#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTTG 0.9444444444444444 0.0 0.9894736842105263 -----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:35:10789:18569#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTC 0.9444444444444444 0.75 1.0 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:119:6346:14961#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 +------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:91:4374:15473#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.978021978021978 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:103:3795:3240#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:29:14804:5990#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989247311827957 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:95:7313:16321#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 1.0 @@ -281,12 +354,15 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:103:5164:13563#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 1.0 ----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:114:15155:17906#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9888888888888889 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:6:14985:3997#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTCATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 0.989247311827957 +----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:37:17848:8896#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9887640449438202 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:108:7851:15709#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:85:10445:1329#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.9888888888888889 --------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:49:17701:20488#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 0.9787234042553191 ----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:115:19601:4276#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9777777777777777 +------------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:29:13001:19024#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGT 0.9444444444444444 1.0 1.0 -------------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:18:7754:20236#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT 1.0 0.25 1.0 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:90:12859:17003#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.989010989010989 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:103:2511:6814#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:16:6262:3651#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTC 0.9411764705882353 0.75 0.9888888888888889 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:50:6541:15325#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:19:8871:6559#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9891304347826086 @@ -296,13 +372,17 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:107:17659:20457#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.989247311827957 ------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:106:2685:2812#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.978494623655914 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:22:18897:12772#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +--------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:53:9228:6974#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTGTTTTTTATTGCGAAGTAGGTGGTTTGT 1.0 0.3333333333333333 0.978494623655914 -------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:38:15952:5794#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTTTG 0.9444444444444444 0.0 0.9893617021276596 ------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:56:9108:9769#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9891304347826086 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:72:2425:6509#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGGAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9782608695652174 ------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:115:10651:13041#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGTTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 0.9891304347826086 ------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:106:19752:14847#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:20:4212:17390#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 -------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:94:3257:7340#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:33:5776:9400#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATCTGTT 0.9444444444444444 0.0 1.0 -----------------------**---------------------------------------------------@@-------**-------@ HWUSI-EAS149L_0095_FC:1:23:7510:12488#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTC 1.0 0.5 0.989010989010989 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:118:14160:4917#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:42:13444:9357#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.9891304347826086 -------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:29:16442:16813#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:119:7949:4251#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 @@ -311,6 +391,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:93:5160:17395#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTTTG 0.9444444444444444 0.0 0.978494623655914 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:53:9340:9905#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:59:15566:20958#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:31:13230:11014#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9891304347826086 --------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:39:17539:11038#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGTAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 0.9894736842105263 -----------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:49:14462:19519#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 -----------------------------------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:2:9047:16847#0/1 ATATTTTTAATGAGGGAGGAGGTTAGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTCATTTGTT 1.0 0.0 0.978494623655914 @@ -319,11 +400,14 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:72:3655:14965#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTACTTTTTATTGCGAAGTAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 0.9891304347826086 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:38:12828:5706#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:100:5448:1789#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9777777777777777 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:105:12196:15923#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:21:15175:2955#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:51:7737:10019#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989247311827957 --------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:27:3682:14219#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 0.9893617021276596 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:67:5741:17197#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -----------------------@@---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:106:2569:2009#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTT 0.9444444444444444 0.25 0.989010989010989 --------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:11:9886:11287#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGGGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9787234042553191 +------------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:2:18641:11188#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.3333333333333333 0.978021978021978 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:72:11324:11120#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9894736842105263 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:90:9750:11542#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCT 0.9444444444444444 0.0 0.9891304347826086 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:113:3251:11964#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGAATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.978494623655914 @@ -333,28 +417,37 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:119:16585:16052#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTC 0.9444444444444444 0.25 0.989010989010989 ------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:33:15712:16498#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 -----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:107:2911:2621#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTTCG 0.9444444444444444 0.75 1.0 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:6:16152:3252#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 --------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:111:13164:3213#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:8:6105:7585#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATCTGTTT 0.9411764705882353 0.5 1.0 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:102:1375:14472#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989247311827957 --------------------------**---------------------------------------------------@@-------**-------@@ HWUSI-EAS149L_0095_FC:1:103:8312:5333#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTCG 1.0 0.5 1.0 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:22:19584:14824#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9411764705882353 0.0 0.9887640449438202 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:112:14054:12476#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:104:17850:5243#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989010989010989 -------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:71:11152:3132#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9893617021276596 -------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:40:14731:16181#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 +-------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:50:9385:7170#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGGTTTGT 1.0 0.6666666666666666 0.9891304347826086 --------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:31:10306:2199#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:119:15514:10453#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9782608695652174 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:3:15025:3872#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 1.0 +----------------------**---------------------------------------------------**--------------- HWUSI-EAS149L_0095_FC:1:116:8272:13490#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGAAATTTGT 1.0 0.0 0.9777777777777777 +----------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:29:19279:7711#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9887640449438202 --------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:58:6975:17154#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:31:14331:21228#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:97:13666:13471#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.989010989010989 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:54:8251:3089#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:31:13888:4551#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG 1.0 0.0 1.0 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:30:15386:1114#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTCATTTGTTTG 1.0 0.0 0.9894736842105263 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:22:10539:21301#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:42:9056:6124#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 --------------------------@@---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:47:3456:5888#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGCT 0.9444444444444444 0.3333333333333333 0.9787234042553191 ------------------------@@---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:90:13396:13441#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 1.0 0.5 1.0 -------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:119:12066:16144#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGACGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 0.9893617021276596 ----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:80:12921:12995#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 -------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:5:13645:18270#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.978494623655914 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:116:18879:15094#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:57:7044:1075#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:70:9058:1995#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9891304347826086 -------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:66:18509:15120#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 1.0 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:101:8657:6838#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 1.0 @@ -362,6 +455,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------@@---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:110:13834:16506#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9777777777777777 ------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:110:1524:13706#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:69:6315:13539#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:120:12153:2594#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ----------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:52:13664:17037#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:115:4259:6179#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:32:6441:11392#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 1.0 @@ -371,13 +465,18 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:69:12194:6802#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:21:6037:12663#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9893617021276596 ------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:62:14612:2841#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.989247311827957 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:89:17998:9449#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGC 0.9444444444444444 0.0 0.989010989010989 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:27:13433:7049#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:16:3862:2747#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTCTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 0.9893617021276596 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:33:12753:11382#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@----------------** HWUSI-EAS149L_0095_FC:1:1:3305:4686#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGGCATTTGTTTG 1.0 0.3333333333333333 0.9787234042553191 ----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:29:8477:13177#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9888888888888889 ------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:31:17149:10996#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:107:9389:7926#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTATT 0.9444444444444444 0.6666666666666666 0.989010989010989 ----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:94:2665:19800#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.9777777777777777 --------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:76:9862:10159#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTCG 0.9444444444444444 0.25 0.9894736842105263 +--------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:111:11199:8776#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989247311827957 +-------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:64:3406:8819#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9891304347826086 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:19:4192:10756#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9893617021276596 ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:15:3380:5778#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 ----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:5:14682:16114#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9411764705882353 0.5 0.989010989010989 @@ -399,60 +498,86 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se --------------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:111:16956:12364#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGCTT 0.9444444444444444 0.25 1.0 ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:64:18699:11442#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989010989010989 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:47:15426:3950#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:91:2889:7279#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 --------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:85:16489:20693#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.9894736842105263 --------------------------@@---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:38:3414:16222#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9893617021276596 -----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:49:3663:10350#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATCTGTTC 0.9444444444444444 0.25 1.0 -----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:119:5747:19584#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTC 1.0 0.75 1.0 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:73:9072:18632#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.989010989010989 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:50:12130:2345#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:61:3543:20032#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 -----------------------**---------------------------------------------------@@-------**-------@@ HWUSI-EAS149L_0095_FC:1:40:18130:17162#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTCG 1.0 0.5 0.9891304347826086 -------------------------@@---------------------------------------------------**-------@@------- HWUSI-EAS149L_0095_FC:1:120:7709:20949#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:113:3071:19281#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9893617021276596 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:2:12991:6734#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 -----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:63:5420:6533#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 ------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:95:2063:19150#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 1.0 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:38:13297:17612#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGTT 0.9411764705882353 0.0 0.9888888888888889 ------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:21:1888:8890#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 ----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:105:9111:15026#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9888888888888889 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:49:15646:10176#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +-----------------------@@---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:18:9720:20109#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.6666666666666666 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:52:10104:16958#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:39:5608:10049#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -------------------------@@---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:1:17458:13141#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAACGTTTATTTTTTATTGTGAAGTAGGTTATTTGTTTG 1.0 0.25 0.9787234042553191 -------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:26:2209:19040#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:23:7460:15072#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 -----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:120:5180:5177#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTCG 1.0 0.75 1.0 --------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:43:7396:16925#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 ----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:30:7231:6525#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9888888888888889 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:52:17444:5169#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGGAGTAGGTAATTTGTTTG 1.0 0.0 0.9789473684210527 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:36:5399:2910#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGCTTG 0.9444444444444444 0.5 1.0 +-------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:46:4452:17142#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 ----------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:16:17379:14991#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:40:11457:3917#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:47:2522:10751#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGGAGGAGGCGATTTGT 1.0 0.6666666666666666 0.9662921348314607 ------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:117:14054:9820#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTT 0.9444444444444444 0.6666666666666666 0.9891304347826086 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:79:18653:14901#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTACGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.989010989010989 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:33:19020:3875#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 +-----------------------**---------------------------------------------------**-------@@------ HWUSI-EAS149L_0095_FC:1:111:1779:3962#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT 0.9444444444444444 0.3333333333333333 1.0 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:33:4188:18202#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:28:10967:19498#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.9891304347826086 ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:93:11029:16359#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTTTG 0.9411764705882353 0.0 0.989010989010989 +-------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:80:19322:12804#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT 1.0 0.0 1.0 ----------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:48:18854:18813#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGCT 0.9411764705882353 0.3333333333333333 0.9888888888888889 +-------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:67:15937:14264#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATCTGT 0.9444444444444444 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@-------**-------@ HWUSI-EAS149L_0095_FC:1:61:7030:12215#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTC 1.0 0.5 0.9893617021276596 --------------------------@@---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:85:12586:16821#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.9893617021276596 ------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:9:17478:4682#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9891304347826086 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:27:2071:8097#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:97:2317:4178#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:101:17935:11346#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 ----------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:18:2403:16530#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGCTT 0.9411764705882353 0.25 1.0 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:19:5022:20573#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:83:7794:16714#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNTGGTTCATTTTTTATTGCGAAGTAGGCGATTTGTTT 0.9444444444444444 0.5 0.978494623655914 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:6457:3262#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 +------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:92:8096:1489#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 +--------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:17:11652:4598#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCAATTTGT 1.0 0.6666666666666666 0.989247311827957 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:71:3960:4319#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:16:16481:3935#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTGTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9782608695652174 --------------------------**---------------------------------------------------**-------**-------@@ HWUSI-EAS149L_0095_FC:1:6:16457:13742#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTCG 1.0 0.25 0.9894736842105263 ----------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:84:6547:11792#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGATGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 0.9888888888888889 ----------------------**---------------------------------------------------@@-------**-------* HWUSI-EAS149L_0095_FC:1:21:11836:12058#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTT 1.0 0.25 1.0 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:66:7005:16340#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:62:5433:14061#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 1.0 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:27:16313:13260#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.9891304347826086 --------------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:93:10287:20060#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 --------------------------@@---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:63:9851:6144#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATCTGTTT 0.9444444444444444 0.75 1.0 +----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:67:9082:11058#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:36:13890:14059#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT 0.9411764705882353 0.6666666666666666 0.9887640449438202 --------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:79:5201:2073#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 1.0 --------------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:54:3133:4712#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9893617021276596 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:117:5337:19361#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.989010989010989 -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:109:12003:4813#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989010989010989 ----------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:51:10894:10721#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTTC 0.9411764705882353 0.75 1.0 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:52:16848:1117#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 --------------------------**---------------------------------------------------@@-------@@-------@ HWUSI-EAS149L_0095_FC:1:61:6258:16105#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGTTC 0.9444444444444444 0.75 1.0 -------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:51:9210:17279#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGTTTG 0.9444444444444444 0.0 0.9893617021276596 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:83:1846:2116#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9888888888888889 ------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:82:12251:13902#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGCAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTTG 1.0 0.25 0.978494623655914 +----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:107:12689:3335#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 +------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:67:4939:3237#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 +--------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:52:5349:8871#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAACTTGT 0.9444444444444444 0.3333333333333333 0.989247311827957 -------------------------@@---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:102:7976:5346#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.75 1.0 -------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:50:6292:12085#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9893617021276596 --------------------------**---------------------------------------------------@@-------**-------@ HWUSI-EAS149L_0095_FC:1:9:19232:11313#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGTTC 0.9444444444444444 0.5 1.0 @@ -463,6 +588,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:89:13949:15582#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTTG 1.0 0.0 1.0 ------------------------**---------------------------------------------------**-------@@------- HWUSI-EAS149L_0095_FC:1:66:13198:3730#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTT 1.0 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@---------------- HWUSI-EAS149L_0095_FC:1:27:8882:14394#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGCGAAGGAGGAGATTTGTT 1.0 0.5 0.968421052631579 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:18:13018:3685#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 -------------------------**---------------------------------------------------@@-------**-------@@ HWUSI-EAS149L_0095_FC:1:1:19700:1397#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTCATTTGTTCG 1.0 0.5 0.9893617021276596 ------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:95:11758:20077#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 1.0 0.25 1.0 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:120:5345:9252#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTT 1.0 0.3333333333333333 1.0 @@ -471,21 +597,26 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:36:10260:9777#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATCGCGAAGTAGGTGATTTGTTTG 1.0 0.25 0.9787234042553191 ------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:76:11398:13587#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTACGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTTTG 0.9444444444444444 0.0 0.978494623655914 -----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:80:7474:11931#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9891304347826086 +--------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:10823:9201#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:69:6439:8653#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------@@-------** HWUSI-EAS149L_0095_FC:1:38:18288:8052#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTGTTTG 1.0 0.25 1.0 ------------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:13:14984:4205#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 0.9444444444444444 0.5 1.0 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:34:1223:11481#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.9891304347826086 ------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:34:10859:19560#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:82:5943:14912#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTT 1.0 0.0 0.978021978021978 --------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:36:16668:17926#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGACAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTT 1.0 0.0 0.9893617021276596 +-----------------------**---------------------------------------------------**-------@@------ HWUSI-EAS149L_0095_FC:1:94:14634:6875#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT 0.9444444444444444 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:112:1958:7414#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:76:12490:9670#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGACGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 0.989010989010989 --------------------------@@---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:106:10305:14184#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTTTG 1.0 0.5 0.9894736842105263 ----------------------**---------------------------------------------------@@----------------** HWUSI-EAS149L_0095_FC:1:57:4795:19503#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGATTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGGGATTTGTTTG 1.0 0.3333333333333333 0.9782608695652174 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:33:16847:14881#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9894736842105263 --------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:20:7392:9880#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:34:11217:11624#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 ----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:39:8355:2852#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.989010989010989 ----------------------**---------------------------------------------------**-------**-------@ HWUSI-EAS149L_0095_FC:1:50:4205:7323#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTC 1.0 0.25 0.9888888888888889 -------------------------**---------------------------------------------------@@-------**------- HWUSI-EAS149L_0095_FC:1:34:18567:11507#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGTT 1.0 0.3333333333333333 0.989247311827957 +-----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:116:15058:9492#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGGTTTGT 1.0 0.3333333333333333 0.9888888888888889 --------------------------@@---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:80:7991:7229#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 1.0 1.0 --------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:106:12097:13856#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.9893617021276596 -----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:80:11273:10873#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTTG 1.0 0.5 1.0 @@ -494,6 +625,7 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se -----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:103:16764:8490#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.989010989010989 ----------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:92:19311:19515#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTT 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:2:19209:12239#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGTGAAGTAGGTAATTTGTT 0.9444444444444444 0.0 0.989247311827957 +-----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:4:9107:19260#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGTTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9777777777777777 --------------------------**---------------------------------------------------@@-------**-------** HWUSI-EAS149L_0095_FC:1:75:5744:4950#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGTTTG 1.0 0.25 1.0 -------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:52:9021:6412#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 ----------------------------------------------------------------------------**-------@@-------@ HWUSI-EAS149L_0095_FC:1:77:5343:14698#0/1 TATTTTTAATGAGGGAGGAGGTTAGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTTC 1.0 0.6666666666666666 0.9782608695652174 @@ -502,5 +634,8 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se --------------------------**---------------------------------------------------**-------@@-------** HWUSI-EAS149L_0095_FC:1:23:3163:2799#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGTTTG 1.0 0.25 0.9894736842105263 --------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:90:8752:16528#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGTTTG 1.0 0.0 0.9894736842105263 ----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:31:9697:8933#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGTTT 1.0 0.0 1.0 +----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:103:19349:6942#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 +------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:70:12921:5624#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989010989010989 +-----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:25:3221:7590#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:42:6875:13793#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:120:16758:12213#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGTTT 1.0 0.5 1.0 diff --git a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.filtered.txt b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.filtered.txt index 4cdf7f4..1c47ecc 100644 --- a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.filtered.txt +++ b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.filtered.txt @@ -1,7 +1,5 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate sequenceIdentity --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:32:14975:14119#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGCAGGTAATTTGT 0.8888888888888888 0.0 0.9891304347826086 ------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:73:9326:13034#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGTGATTTG 0.8823529411764706 0.3333333333333333 1.0 --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:86:19255:9841#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGC 0.8888888888888888 0.0 0.9782608695652174 ------------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:39:15226:14145#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATCTG 0.8823529411764706 1.0 1.0 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:35:3892:16175#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTG 0.8823529411764706 0.0 0.9775280898876404 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:113:4122:14966#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTG 0.8823529411764706 0.0 0.9888888888888889 diff --git a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.txt b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.txt index 7cee45a..221d5e1 100644 --- a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.txt +++ b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_CpGBounded.txt @@ -2,192 +2,93 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:41:18716:16092#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGCTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9886363636363636 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:50:10679:2420#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTG 0.9411764705882353 0.0 0.9891304347826086 ----------------------**---------------------------------------------------@@-------------- HWUSI-EAS149L_0095_FC:1:1:5263:7689#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGGTATTTG 1.0 0.5 0.9775280898876404 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:77:15843:7025#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGGTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.978021978021978 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:110:13124:3050#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTG 0.9411764705882353 0.0 0.9891304347826086 ---------------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:92:11236:12432#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 1.0 1.0 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:23:18788:10690#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGTTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9891304347826086 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:50:17539:10710#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ----------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:73:3668:9734#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATCTG 0.9375 1.0 1.0 -----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:104:13024:10013#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9887640449438202 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:14182:3401#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGCAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:23:3544:17576#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:68:7798:14690#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:21:12398:11200#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:48:13283:5382#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:5:4717:10585#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9886363636363636 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:59:6673:8547#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9891304347826086 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:1:10244:15506#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9775280898876404 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:114:1524:5369#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATATGT 1.0 0.6666666666666666 0.9891304347826086 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:10309:18134#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 -----------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:66:16117:19233#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGCGAAGTAGGCGATCTG 0.9411764705882353 1.0 0.9887640449438202 -------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:29:4284:15142#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTGT 0.9444444444444444 0.3333333333333333 1.0 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:106:9329:13047#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:10999:18048#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:26:5432:2528#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTG 0.9411764705882353 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:71:18108:10304#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:35:7916:15828#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:37:17637:8223#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9888888888888889 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:85:12165:18439#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9888888888888889 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:34:9290:2499#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:21:15777:12532#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.989010989010989 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:57:8890:17286#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:103:9126:5944#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 ----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:13:5299:19969#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTG 0.9375 0.3333333333333333 1.0 --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:15:6344:17401#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9891304347826086 --------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:22:5350:6147#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:12:4425:10017#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:64:13719:6381#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 ---------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:82:19792:14707#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 0.989247311827957 -----------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:59:11197:14029#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTACGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT 0.9411764705882353 0.3333333333333333 0.9775280898876404 --------------------------**---------------------------------------------------@@-------------- HWUSI-EAS149L_0095_FC:1:4:3721:8929#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTCTTATTGCGAAGTAGGGGATTTG 0.9444444444444444 0.5 0.978494623655914 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:100:5200:10879#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:53:12802:19448#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9888888888888889 -----------------------**---------------------------------------------------**-------@@----- HWUSI-EAS149L_0095_FC:1:69:19606:14436#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTG 1.0 0.3333333333333333 0.9887640449438202 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:83:7133:6964#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNTGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9777777777777777 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:59:12278:2294#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9887640449438202 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:6:3665:7171#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9887640449438202 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:107:6621:2198#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:106:15461:2802#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9886363636363636 -------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:62:10244:20413#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.989010989010989 ---------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:39:13143:15426#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:31:12358:15175#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9886363636363636 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:106:15084:11883#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:103:2628:10191#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:17:8838:1875#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:102:5313:18932#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT 1.0 0.0 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:34:10051:2459#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------@@----- HWUSI-EAS149L_0095_FC:1:18:6066:10447#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTG 1.0 0.3333333333333333 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:77:3732:14626#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:102:11220:1600#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT 0.9444444444444444 0.0 0.978494623655914 ------------------------**---------------------------------------------------**-------@@----- HWUSI-EAS149L_0095_FC:1:22:11589:7115#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCGATTTG 1.0 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:89:4923:19956#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9891304347826086 -------------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:64:9015:5464#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989010989010989 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:80:17517:14963#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:39:4650:10479#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 1.0 1.0 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:54:4965:8189#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGGAGTAGGTAATTTGT 1.0 0.0 0.978494623655914 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:43:13447:1806#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:59:4720:3310#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ---------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:66:2125:10585#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:4:9785:14963#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9772727272727273 --------------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:106:6179:11721#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 1.0 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:25:13778:17411#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATCGCGAAGCAGGCGATTTGT 0.9444444444444444 0.6666666666666666 0.989010989010989 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:58:12435:12677#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:45:12653:3333#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9782608695652174 ------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:76:5187:19457#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTGTGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 0.9888888888888889 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:92:11327:11493#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTGT 0.9411764705882353 0.0 0.9887640449438202 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:86:4883:9283#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGATAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9772727272727273 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:5:15737:20008#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.978494623655914 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:79:4491:3136#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTACGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9782608695652174 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:91:8644:7694#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:5:6704:5793#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTANTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9775280898876404 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:69:11702:15456#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTG 0.9411764705882353 0.6666666666666666 1.0 ---------------------------@@---------------------------------------------------**-------@@------ HWUSI-EAS149L_0095_FC:1:30:5197:5711#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGCAATTTGT 1.0 0.6666666666666666 0.989247311827957 -----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:101:9016:4251#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGTGATTTGT 0.9411764705882353 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:33:11901:2396#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:102:8585:12687#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:45:15091:4983#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:115:11692:8909#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG 0.9411764705882353 0.0 0.9887640449438202 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:33:9514:5682#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:27:14240:16451#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:86:9386:5659#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.978021978021978 --------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:108:7526:15001#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:90:6730:7759#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:79:6994:20980#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTATGAAGTAGGTAATTTG 1.0 0.0 0.978021978021978 --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:44:4202:7452#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9891304347826086 ----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:88:10315:19653#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9772727272727273 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:3:12922:5118#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 -------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:51:18994:19283#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTG 0.9411764705882353 0.0 0.989010989010989 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:43:11257:5282#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9888888888888889 -----------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:4:18175:20380#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATCTGT 0.9411764705882353 1.0 0.9887640449438202 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:82:1925:5422#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTAATTTTTATTGCGAAGCAGGCGATTTGT 0.9411764705882353 0.6666666666666666 0.9775280898876404 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:43:7034:13767#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:118:18342:9854#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTATGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9777777777777777 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:14:11753:5243#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAACTTGT 0.9444444444444444 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:70:3228:15885#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:113:15880:14296#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAGGTAGGCGATTTG 1.0 0.6666666666666666 0.9887640449438202 ---------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:28:5771:16612#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.989247311827957 -----------------------@@---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:34:3569:3441#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9887640449438202 -------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:111:8817:8723#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.989010989010989 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:18:18887:6369#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 ------------------------@@---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:113:9028:13236#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.6666666666666666 0.9888888888888889 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:31:15406:19134#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATCGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9782608695652174 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:19:15114:7938#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTG 0.9411764705882353 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:63:6489:5999#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGCGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 0.9891304347826086 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:56:9413:14341#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 --------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:109:2145:2574#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 0.9444444444444444 0.3333333333333333 1.0 --------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:99:16079:18603#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATTTG 0.9411764705882353 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:43:16298:11550#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:44:19095:13268#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:6:6320:9556#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989010989010989 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:114:13733:11173#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT 0.9411764705882353 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:120:19429:11309#0/1 ATATTTTTAATGAGGGAGGAGGTTTGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9777777777777777 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:16:18887:5717#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTNTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9782608695652174 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:65:16528:3052#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9887640449438202 --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:42:17960:8689#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9891304347826086 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:72:1618:18551#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:107:9214:10845#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:107:16130:14905#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:6:17971:16051#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9891304347826086 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:56:10923:1862#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTG 0.9411764705882353 0.0 0.9891304347826086 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:1:19017:11869#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9886363636363636 ------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:84:2010:19781#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGGAGGTGATTTG 1.0 0.3333333333333333 0.9888888888888889 ------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:9:4354:18324#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGGAGTAGGTGATATGT 0.9444444444444444 0.3333333333333333 0.9777777777777777 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:10:17906:8553#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:38:6357:9946#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT 1.0 0.0 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:31:5478:14639#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:69:4798:7601#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ---------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:61:5516:2993#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGGTTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.989247311827957 ------------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:94:10019:10450#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 1.0 1.0 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:59:4111:2084#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 ----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:102:10740:17228#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 ------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:109:9459:16055#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATCTG 0.9411764705882353 0.3333333333333333 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:57:19080:15132#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:91:4374:15473#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTCGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.978021978021978 ----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:56:3519:17256#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 -----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:37:17848:8896#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9887640449438202 -----------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:101:18225:15779#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAGGTAGGCGATTTG 1.0 1.0 0.9775280898876404 ----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:68:5903:3079#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 -------------------------@@---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:29:13001:19024#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGACTTGT 0.9444444444444444 1.0 1.0 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:103:2511:6814#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:6:5807:9140#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9888888888888889 -----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:22:10197:14474#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGGTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 0.9887640449438202 ---------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:53:9228:6974#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTGTTTTTTATTGCGAAGTAGGTGGTTTGT 1.0 0.3333333333333333 0.978494623655914 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:72:2425:6509#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGCGGAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9782608695652174 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:20:4212:17390#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:118:14160:4917#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:85:18363:8381#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGATTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9888888888888889 --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:31:13230:11014#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9891304347826086 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:84:8516:17952#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:117:12302:14767#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.989010989010989 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:105:12196:15923#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:67:5741:17197#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTCTTATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -------------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:2:18641:11188#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGCTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.3333333333333333 0.978021978021978 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:39:8702:20480#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 -------------------------@@---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:29:18868:4640#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.989010989010989 -----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:62:2336:12324#0/1 TATTTTTAATGAGGGAGGAGGTTTGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 0.9887640449438202 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:53:18192:11474#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTAATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9886363636363636 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:6:16152:3252#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:106:19493:14466#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTG 1.0 0.0 1.0 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:22:19584:14824#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9411764705882353 0.0 0.9887640449438202 ------------------------@@---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:18:7583:13173#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9888888888888889 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:106:13786:9519#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9886363636363636 --------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:50:9385:7170#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGGTTTGT 1.0 0.6666666666666666 0.9891304347826086 -----------------------**---------------------------------------------------**--------------- HWUSI-EAS149L_0095_FC:1:116:8272:13490#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGAAATTTGT 1.0 0.0 0.9777777777777777 -----------------------@@---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:29:19279:7711#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9887640449438202 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:70:11874:5641#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:54:8251:3089#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:22:10539:21301#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:61:5219:13579#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:116:18879:15094#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:57:7044:1075#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:43:15250:21194#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGACTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9891304347826086 -----------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:120:12153:2594#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9887640449438202 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:103:10383:13152#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:89:17998:9449#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGC 0.9444444444444444 0.0 0.989010989010989 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:27:13433:7049#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:33:12753:11382#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ---------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:111:11199:8776#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989247311827957 --------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:64:3406:8819#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.9891304347826086 -------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:14:4697:7599#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTAATTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.978021978021978 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:35:15806:4243#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGATAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.989010989010989 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:32:7493:6543#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9777777777777777 @@ -196,69 +97,33 @@ methylationString ID originalSequence BisulfiteConversionRate methylationRate se ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:15:13384:4055#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9886363636363636 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:101:8182:7471#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9888888888888889 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:38:8898:12120#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG 0.9375 0.0 0.9886363636363636 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:91:2889:7279#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:108:2511:9867#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:50:12130:2345#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:49:7094:18917#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9772727272727273 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:2:12991:6734#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 ------------------------@@---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:18:9720:20109#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.6666666666666666 0.9888888888888889 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:23:7460:15072#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:26:15173:1410#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9777777777777777 --------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:46:4452:17142#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 -------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:116:5324:7064#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.989010989010989 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:40:11457:3917#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:77:18168:16979#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGGTTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.9886363636363636 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:47:2522:10751#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGGAGGAGGCGATTTGT 1.0 0.6666666666666666 0.9662921348314607 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:33:19020:3875#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------@@------ HWUSI-EAS149L_0095_FC:1:111:1779:3962#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT 0.9444444444444444 0.3333333333333333 1.0 -----------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:33:11136:11732#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGGAGGCTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 1.0 0.9775280898876404 ----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:56:5480:13168#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTG 1.0 0.0 1.0 --------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:80:19322:12804#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTGATTTGT 1.0 0.0 1.0 --------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:67:15937:14264#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATCTGT 0.9444444444444444 0.3333333333333333 1.0 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:32:9249:2282#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9887640449438202 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:27:2071:8097#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:54:18704:4246#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG 0.9411764705882353 0.0 0.989010989010989 ----------------------@@---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:58:5257:4508#0/1 ATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTCTATTGCGAAGTAGGTGATTTG 0.9375 0.6666666666666666 1.0 --------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:35:6003:5011#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:19:5022:20573#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -----------------------@@---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:58:13494:10638#0/1 TATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9887640449438202 ----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:26:15138:1886#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGGGGAGAAGGTCTATTTTTTATTGCGAAGTAGGCGATTTG 0.9375 0.6666666666666666 0.9886363636363636 -----------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:3:13447:10439#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 1.0 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:6457:3262#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 -------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:92:8096:1489#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989010989010989 ---------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:17:11652:4598#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCAATTTGT 1.0 0.6666666666666666 0.989247311827957 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:21:7848:13698#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9891304347826086 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:71:3960:4319#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 0.9444444444444444 0.6666666666666666 1.0 ------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:35:11029:16456#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9888888888888889 ------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:114:12170:10992#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9888888888888889 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:66:7005:16340#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 --------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:98:9949:10066#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGGTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9782608695652174 -----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:67:9082:11058#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:36:13890:14059#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATCTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCAGGCGATTTGT 0.9411764705882353 0.6666666666666666 0.9887640449438202 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:52:16848:1117#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.9888888888888889 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:83:1846:2116#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGNAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9888888888888889 -----------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:107:12689:3335#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 -------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:67:4939:3237#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 1.0 ---------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:52:5349:8871#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAACTTGT 0.9444444444444444 0.3333333333333333 0.989247311827957 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:109:13940:20846#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGCTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 0.9411764705882353 0.0 0.9887640449438202 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:50:3987:12525#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTG 1.0 0.3333333333333333 0.9891304347826086 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:18:13018:3685#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTGT 0.9444444444444444 0.0 0.989247311827957 --------------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:37:19558:18369#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGCTGGTAATTTG 0.9411764705882353 0.3333333333333333 0.9782608695652174 ---------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:101:10823:9201#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.989247311827957 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:69:6439:8653#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 --------------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:40:17857:19275#0/1 AAATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 1.0 1.0 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:66:3990:11032#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGTAGGTAATTTG 0.9411764705882353 0.0 0.9887640449438202 --------------------------**---------------------------------------------------**-------@@----- HWUSI-EAS149L_0095_FC:1:56:9665:10172#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTG 0.9411764705882353 0.3333333333333333 1.0 ------------------------**---------------------------------------------------**-------@@------ HWUSI-EAS149L_0095_FC:1:94:14634:6875#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTCTATTTTTTATTGTGAAGTAGGCGATTTGT 0.9444444444444444 0.3333333333333333 1.0 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:34:11217:11624#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 ------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:116:15058:9492#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGGTTTGT 1.0 0.3333333333333333 0.9888888888888889 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:33:13042:3193#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9888888888888889 ------------------------**---------------------------------------------------@@-------@@------ HWUSI-EAS149L_0095_FC:1:4:9107:19260#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGTTGGTTGGGTTTGATTTATGATTGGAGGAGAAGGNTTATTTTTTATTGCGAAGTAGGCGATTTGT 1.0 0.6666666666666666 0.9777777777777777 -------------------------**---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:35:10464:4522#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGACAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 0.6666666666666666 0.989010989010989 -----------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:58:4104:15536#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTG 1.0 0.0 0.9887640449438202 ------------------------**---------------------------------------------------**-------**----- HWUSI-EAS149L_0095_FC:1:111:4850:20696#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATCTG 0.9411764705882353 0.0 0.9888888888888889 -----------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:103:19349:6942#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTGT 1.0 0.3333333333333333 1.0 -------------------------**---------------------------------------------------@@-------**------ HWUSI-EAS149L_0095_FC:1:70:12921:5624#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTAATTTGT 1.0 0.3333333333333333 0.989010989010989 ------------------------**---------------------------------------------------**-------**------ HWUSI-EAS149L_0095_FC:1:25:3221:7590#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGTGAAGTAGGTAATTTGT 1.0 0.0 0.9888888888888889 -----------------------**---------------------------------------------------@@-------**----- HWUSI-EAS149L_0095_FC:1:34:3615:18454#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGTGATTTG 1.0 0.3333333333333333 1.0 -------------------------@@---------------------------------------------------@@-------@@----- HWUSI-EAS149L_0095_FC:1:118:17634:13195#0/1 AATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTATTGCGAAGTAGGCGATTTG 1.0 1.0 1.0 diff --git a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_MethylationWithSNP.txt b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_MethylationWithSNP.txt index 6b3a9c6..a0d8415 100644 --- a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_MethylationWithSNP.txt +++ b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_MethylationWithSNP.txt @@ -1,4 +1,4 @@ MethylationWithSNP count percentage MethylParent -CGAGGATGGCTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTCCCACTGCGAAGCAGGCGACCTGCT ref -**---------------------------------------------------**-------*A------- 174 0.344554 0 -**---------------------------------------------------@@-------@@------- 189 0.374257 1 +CGAGGATGGCTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTCCCACTGCGAAGCAGGCGACCTGC ref +**---------------------------------------------------**-------*A------ 221 0.345313 0 +**---------------------------------------------------@@-------@@------ 237 0.370313 1 diff --git a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_report.txt b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_report.txt index eed16ca..2d084e9 100644 --- a/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_report.txt +++ b/BSPAT/testFiles/experiment2/LOC440034_bismark.analysis_report.txt @@ -1,11 +1,11 @@ target region start position: 31 -target region length: 71 +target region length: 70 Bisulfite conversion rate threshold: 0.9 Sequence identity threshold: 0.9 -A. Sequences cover whole target region: 521 -A. After quality control: 505 -B. Sequences don't cover whole target but cover all CpGs: 269 -B. After quality control: 263 +A. Sequences cover whole target region: 658 +A. After quality control: 640 +B. Sequences don't cover whole target but cover all CpGs: 132 +B. After quality control: 128 C. Sequences cover neither target nor all CpGs: 3 methylation rate for each CpG site: pos rate @@ -83,4 +83,3 @@ mismatch stat: 68 ref:T A:0 C:0 G:0 T:0 N:0 total: 0 coverage:768 69 ref:G A:1 C:0 G:0 T:0 N:0 total: 1 coverage:768 70 ref:C A:0 C:0 G:2 T:0 N:0 total: 2 coverage:640 -71 ref:T A:0 C:2 G:0 T:0 N:0 total: 2 coverage:505 diff --git a/BSPAT/testFiles/experiment2/pics/LOC440034_ASM.bed b/BSPAT/testFiles/experiment2/pics/LOC440034_ASM.bed index 42cd144..df8a3d9 100644 --- a/BSPAT/testFiles/experiment2/pics/LOC440034_ASM.bed +++ b/BSPAT/testFiles/experiment2/pics/LOC440034_ASM.bed @@ -1,13 +1,13 @@ -browser position chr11:31794641-31794711 +browser position chr11:31794641-31794710 browser hide all track name="PatternA" description="experiment2-LOC440034-ASM" visibility=1 itemRgb="On" -chr11 31794640 31794711 refbar 0 + 31794640 31794640 0,0,0 -chr11 31794693 31794695 CG-PatternA 251 + 31794693 31794695 255,41,0 -chr11 31794702 31794704 CG-PatternA 212 + 31794702 31794704 255,111,0 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zc?IR8Syz&U-@ND7xy`2B4PL{&*_-E3qw03<4zkuL`~7|Zv%-&$qbQ7sc+~}(bl+k% z8?t?VU7!!OrxV%VnYB&4m{A!+YtsM0zg4_vzj{>Umn?>L<0=VOaHre{Lp$1$`` z%XKk(v;XM!z9M?2%itM-5(Yu{79clSyx=04vY>t9f)$Z~3)@d7-!USn&zYCJmO7&l zZvLbb)^Ot)Gwm6BOQnC%$TaR(9w%ma>e}L9@xd4xajULE{A`K(#Hdt)cNwIk9%fGl zeV!U(yWhRmR{x)w0ZtZ1ukvwYQB1~CsVug)y>LTP1e1`EhPtsTg<0XJdMVGNdP*(ox$fkIV-8CY&{pgw?$TqGuI zoS=FTf~f+tDR@KEbMW3;s^d%ti$2MYH)^fhM5YTN!%!72LtPXgFoOO4Ch^}#_Um*^ zNB*xn%NOgwB{2Q`d8c{ysgI=^lVb6cwx9)+x-G=3`tHiBBqME^I&-M)G5J+}s>$Fd z$CVmohd(TETZv6_D(TJiHkyi2dwgC+W!OW4DMEL-8%#oWx{qX!KP;{X zH!pI_p`#NgclV&7*?ASRt|9T-gsa&GhY!yBx0kZ1k6(v!D!za7+7Y<@#Vu}n?SBIl zZ2J1Z|2vF8=-(#vYb*Z$RQba6FI@Y}5{EdtX0Or1Ig6!ZK5EBy?{wXfwf*qr{{j75 BY%Tx* From 6cde52e6fe912601e5eb85ddf3b302583945be5e Mon Sep 17 00:00:00 2001 From: Ke Hu Date: Mon, 3 Aug 2015 15:07:32 -0400 Subject: [PATCH 09/16] add strand info in figure --- BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java index ace4dca..5045d4f 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java @@ -69,7 +69,7 @@ private void buildFigureFrame(Graphics2D graphWriter, int imageHeight, int image graphWriter.clearRect(0, 0, imageWidth, imageHeight); graphWriter.setPaint(Color.BLACK); graphWriter.setFont(new Font(figure_font, Font.PLAIN, COMMON_FONT_SIZE)); - graphWriter.drawString("chr" + chr + ":" + beginCoor, left, height); + graphWriter.drawString(String.format("chr%s:(%s)%s", chr, strand, beginCoor), left, height); int endCoorLeft = left + (refLength - 1) * BPWIDTH; int beginCoorRight = left + (beginCoor.length() + chr.length()) * 15 + BPWIDTH; graphWriter.drawString(endCoor, endCoorLeft > beginCoorRight ? endCoorLeft : beginCoorRight, height); From 64c8a8b3ff93a348c18dd0f66e0ff2a65885fbec Mon Sep 17 00:00:00 2001 From: Ke Hu Date: Mon, 3 Aug 2015 15:12:23 -0400 Subject: [PATCH 10/16] align celline name better --- .../edu/cwru/cbc/BSPAT/core/DrawPattern.java | 23 +++++++++++-------- 1 file changed, 13 insertions(+), 10 deletions(-) diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java index 5045d4f..033025e 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java @@ -121,7 +121,7 @@ public void drawPattern(PatternLink patternLink) throws IOException { } int height = FIGURE_STARTY; - int left = FIGURE_STARTX + cellLine.length() * CELLLINE_CHAR_LENGTH; + int left = FIGURE_STARTX + (int) (cellLine.length() * CELLLINE_CHAR_LENGTH / 2 * 1.1); int imageWidth = targetLength * BPWIDTH + left + (Integer.toString(beginCoor).length() + Integer.toString( endCoor) @@ -207,7 +207,7 @@ public void drawASMPattern(ReportSummary reportSummary, PatternResult patternWit List statList = data.getStatList(); int height = FIGURE_STARTY; - int left = FIGURE_STARTX + cellLine.length() * CELLLINE_CHAR_LENGTH; + int left = FIGURE_STARTX + (int) (cellLine.length() * CELLLINE_CHAR_LENGTH / 2 * 1.1); int imageWidth = refLength * BPWIDTH + left + 240; int imageHeight = FIGURE_STARTY + 180 + 10 * HEIGHT_INTERVAL; @@ -263,14 +263,17 @@ public void drawASMPattern(ReportSummary reportSummary, PatternResult patternWit if (patternWithAllele.hasAllele()) { List snpList; int snpQueryPos; - if (strand.equals("+")) { - snpQueryPos = convertCoordinates(chr, coordinateMap.get(region).getStart(), "hg38", - patternResultPath, logPath) + patternWithAllele.getAlleleList().get(0); - } else if (strand.equals("-")) { - snpQueryPos = convertCoordinates(chr, coordinateMap.get(region).getEnd(), "hg38", - patternResultPath, logPath) - patternWithAllele.getAlleleList().get(0); - } else { - throw new RuntimeException("invalid strand:" + strand); + switch (strand) { + case "+": + snpQueryPos = convertCoordinates(chr, coordinateMap.get(region).getStart(), "hg38", + patternResultPath, logPath) + patternWithAllele.getAlleleList().get(0); + break; + case "-": + snpQueryPos = convertCoordinates(chr, coordinateMap.get(region).getEnd(), "hg38", + patternResultPath, logPath) - patternWithAllele.getAlleleList().get(0); + break; + default: + throw new RuntimeException("invalid strand:" + strand); } snpList = retreiveSNP(chr, snpQueryPos, "1"); if (snpList != null && snpList.size() > 0) { From 93c0ffdb5fd61669d7ea32f39b87ab0660b29b85 Mon Sep 17 00:00:00 2001 From: Ke Hu Date: Mon, 3 Aug 2015 15:34:05 -0400 Subject: [PATCH 11/16] fix figure width with small number of CpG site --- .../edu/cwru/cbc/BSPAT/core/DrawPattern.java | 33 ++++++++++--------- 1 file changed, 17 insertions(+), 16 deletions(-) diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java index 033025e..33437fb 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java @@ -62,17 +62,14 @@ public DrawPattern(String figureFormat, String refVersion, String toolsPath, Str } private void buildFigureFrame(Graphics2D graphWriter, int imageHeight, int imageWidth, int height, int left, - String chr, String beginCoor, String endCoor, int refLength, + String coordinate, int refLength, List cpGStatisticsList) { // 1. add coordinates graphWriter.setBackground(Color.WHITE); graphWriter.clearRect(0, 0, imageWidth, imageHeight); graphWriter.setPaint(Color.BLACK); graphWriter.setFont(new Font(figure_font, Font.PLAIN, COMMON_FONT_SIZE)); - graphWriter.drawString(String.format("chr%s:(%s)%s", chr, strand, beginCoor), left, height); - int endCoorLeft = left + (refLength - 1) * BPWIDTH; - int beginCoorRight = left + (beginCoor.length() + chr.length()) * 15 + BPWIDTH; - graphWriter.drawString(endCoor, endCoorLeft > beginCoorRight ? endCoorLeft : beginCoorRight, height); + graphWriter.drawString(coordinate, left, height); // 2. add reference bar graphWriter.setStroke(new BasicStroke(2.0f)); @@ -99,6 +96,7 @@ public void drawPattern(PatternLink patternLink) throws IOException { String strand = data.getCoordinate().getStrand(); int beginCoor = data.getCoordinate().getStart(); int endCoor = data.getCoordinate().getEnd(); + String coordinate = String.format("chr%s:%d-%d (%s strand)", chr, beginCoor, endCoor, strand); if (patternLink.getPatternType().equals(PatternLink.METHYLATION)) { int startPos = statList.get(0).getPosition() < 0 ? 0 : statList.get(0).getPosition(); @@ -121,11 +119,10 @@ public void drawPattern(PatternLink patternLink) throws IOException { } int height = FIGURE_STARTY; - int left = FIGURE_STARTX + (int) (cellLine.length() * CELLLINE_CHAR_LENGTH / 2 * 1.1); + int left = FIGURE_STARTX + (int) (cellLine.length() * CELLLINE_CHAR_LENGTH / 2 * 1.3); - int imageWidth = targetLength * BPWIDTH + left + (Integer.toString(beginCoor).length() + Integer.toString( - endCoor) - .length() + chr.length()) * 15; + int imageWidth = left + ((targetLength * BPWIDTH + 13 * 20) > coordinate.length() * COMMON_FONT_SIZE / 2 ? targetLength * BPWIDTH + 13 * 20 : coordinate + .length() * COMMON_FONT_SIZE / 2); int imageHeight = FIGURE_STARTY + 180 + patternResultLists.size() * HEIGHT_INTERVAL; FigureWriter methylWriter = new FigureWriter(patternResultPath, figureFormat, region, @@ -134,8 +131,8 @@ public void drawPattern(PatternLink patternLink) throws IOException { patternLink.setGBResultLink(methylWriter.getGBLinkFileName()); patternLink.setFigureResultLink(methylWriter.getFigureName()); - buildFigureFrame(methylWriter.getGraphWriter(), imageHeight, imageWidth, height, left, chr, - String.valueOf(beginCoor), String.valueOf(endCoor), targetLength, statList); + buildFigureFrame(methylWriter.getGraphWriter(), imageHeight, imageWidth, height, left, coordinate, targetLength, + statList); // 4. add CpG sites DecimalFormat percent = new DecimalFormat("##.00%"); @@ -204,11 +201,13 @@ public void drawASMPattern(ReportSummary reportSummary, PatternResult patternWit String strand = data.getCoordinate().getStrand(); int beginCoor = data.getCoordinate().getStart(); int endCoor = data.getCoordinate().getEnd(); + String coordinate = String.format("chr%s:%d-%d (%s strand)", chr, beginCoor, endCoor, strand); List statList = data.getStatList(); int height = FIGURE_STARTY; - int left = FIGURE_STARTX + (int) (cellLine.length() * CELLLINE_CHAR_LENGTH / 2 * 1.1); - int imageWidth = refLength * BPWIDTH + left + 240; + int left = FIGURE_STARTX + (int) (cellLine.length() * CELLLINE_CHAR_LENGTH / 2 * 1.3); + int imageWidth = left + ((refLength * BPWIDTH + 13 * 20) > coordinate.length() * COMMON_FONT_SIZE / 2 ? refLength * BPWIDTH + 13 * 20 : coordinate + .length() * COMMON_FONT_SIZE / 2); int imageHeight = FIGURE_STARTY + 180 + 10 * HEIGHT_INTERVAL; FigureWriter ASMWriter = new FigureWriter(patternResultPath, figureFormat, region, "ASM", imageWidth, @@ -216,8 +215,8 @@ public void drawASMPattern(ReportSummary reportSummary, PatternResult patternWit reportSummary.setASMGBLink(ASMWriter.getGBLinkFileName()); reportSummary.setASMFigureLink(ASMWriter.getFigureName()); - buildFigureFrame(ASMWriter.getGraphWriter(), imageHeight, imageWidth, height, left, chr, - String.valueOf(beginCoor), String.valueOf(endCoor), refLength, statList); + buildFigureFrame(ASMWriter.getGraphWriter(), imageHeight, imageWidth, height, left, coordinate, refLength, + statList); DecimalFormat percent = new DecimalFormat("##.00%"); @@ -240,6 +239,7 @@ public void drawASMPattern(ReportSummary reportSummary, PatternResult patternWit endCoor, strand, beginCoor - 1, beginCoor - 1)); addAverage(ASMWriter.getGraphWriter(), figure_font, patternWithoutAllele.getCpGList(), chr, beginCoor, "PatternA", ASMWriter.getBedWriter(), height, left); + ASMWriter.getGraphWriter().setFont(new Font(figure_font, Font.PLAIN, COMMON_FONT_SIZE)); addAllele(patternWithoutAllele, ASMWriter.getGraphWriter(), ASMWriter.getBedWriter(), chr, beginCoor, height + HEIGHT_INTERVAL, left); height += HEIGHT_INTERVAL * 1.5; @@ -257,6 +257,7 @@ public void drawASMPattern(ReportSummary reportSummary, PatternResult patternWit height += 2 * HEIGHT_INTERVAL; addAverage(ASMWriter.getGraphWriter(), figure_font, patternWithAllele.getCpGList(), chr, beginCoor, "PatternB", ASMWriter.getBedWriter(), height, left); + ASMWriter.getGraphWriter().setFont(new Font(figure_font, Font.PLAIN, COMMON_FONT_SIZE)); addAllele(patternWithAllele, ASMWriter.getGraphWriter(), ASMWriter.getBedWriter(), chr, beginCoor, height + HEIGHT_INTERVAL, left); // set snp info @@ -395,7 +396,7 @@ private List retreiveSNP(String chr, long pos, String maxRet) throws Remote } private int convertCoordinates(String chr, int pos, String targetRefVersion, String patternResultPath, - String logPath) throws IOException, InterruptedException { + String logPath) throws IOException, InterruptedException { if (refVersion.equals(targetRefVersion)) { return pos; } From 5c3571f0ce36c3c9ba69a3ca77eeb5d989ea5c33 Mon Sep 17 00:00:00 2001 From: Ke Hu Date: Mon, 3 Aug 2015 16:31:08 -0400 Subject: [PATCH 12/16] show used target in result page --- .../edu/cwru/cbc/BSPAT/DataType/Constant.java | 4 ++++ BSPAT/web/analysisResult.jsp | 17 +++++++++++++++++ 2 files changed, 21 insertions(+) diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/DataType/Constant.java b/BSPAT/src/edu/cwru/cbc/BSPAT/DataType/Constant.java index 1ef8354..8dcbbaf 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/DataType/Constant.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/DataType/Constant.java @@ -87,6 +87,10 @@ public String getAbsolutePathCoorFile() { return (coorFilePath + coorFileName).replace(Constant.DISKROOTPATH, this.webRootPath); } + public String getAbsolutePathTargetCoorFile() { + return (targetPath + targetFileName).replace(Constant.DISKROOTPATH, this.webRootPath); + } + public String getWebRootPath() { return webRootPath; } diff --git a/BSPAT/web/analysisResult.jsp b/BSPAT/web/analysisResult.jsp index d138b34..7b8f37f 100644 --- a/BSPAT/web/analysisResult.jsp +++ b/BSPAT/web/analysisResult.jsp @@ -10,6 +10,7 @@ <%@ page import="edu.cwru.cbc.BSPAT.DataType.Constant, edu.cwru.cbc.BSPAT.DataType.Experiment" %> <%@ page import="edu.cwru.cbc.BSPAT.DataType.PatternLink" %> +<%@ page import="edu.cwru.cbc.BSPAT.core.BSSeqAnalysis" %> <%@ page import="edu.cwru.cbc.BSPAT.core.ReportSummary" %> <%@ page import="edu.cwru.cbc.BSPAT.core.Utilities" %> @@ -146,6 +147,22 @@ <%=constant.SNPThreshold%> + + Target coordinates used: + <% + if (constant.targetFileName == null) { + %> + Use default first <%=BSSeqAnalysis.DEFAULT_TARGET_LENGTH%>bp as target region + <% + } else { + %> + ><%=constant.targetFileName%> + + + <% + } + %> +

<% From 6087df0bfee3b96f09cf9f366944f54b165573e9 Mon Sep 17 00:00:00 2001 From: lancelothk Date: Mon, 3 Aug 2015 22:34:57 -0400 Subject: [PATCH 13/16] reverse pattern in figure. Modify manual. --- .../cwru/cbc/BSPAT/core/BSSeqAnalysis.java | 20 ++++++------- .../edu/cwru/cbc/BSPAT/core/DrawPattern.java | 22 +++++++++------ BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java | 23 +++++++++------ .../cbc/BSPAT/core/ReadAnalysisResult.java | 28 +++++++++++++------ .../edu/cwru/cbc/BSPAT/core/Utilities.java | 9 +----- BSPAT/web/manualAnalysis.jsp | 4 +-- 6 files changed, 58 insertions(+), 48 deletions(-) diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java index c0a090b..2f7848f 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/BSSeqAnalysis.java @@ -196,8 +196,9 @@ public List execute(String experimentName, return reportSummaries; } - private Map getStringCoordinateMap(Constant constant, Map referenceSeqs, - Map refCoorMap) { + private synchronized Map getStringCoordinateMap(Constant constant, Map referenceSeqs, + Map refCoorMap) throws + IOException { Map targetCoorMap = IO.readCoordinates(constant.targetPath, constant.targetFileName); for (String key : refCoorMap.keySet()) { // if no given targetCoor, get position of first CpG and generate DEFAULT_TARGET_LENGTH bp region. @@ -207,10 +208,7 @@ private Map getStringCoordinateMap(Constant constant, Map getStringCoordinateMap(Constant constant, Map getStringCoordinateMap(Constant constant, Map updatedStatList = new ArrayList<>(statList.size()); int firstCpGPos = statList.get(0).getPosition() < 0 ? 0 : statList.get(0).getPosition(); for (CpGStatistics aStatList : statList) { @@ -118,6 +111,7 @@ public void drawPattern(PatternLink patternLink) throws IOException { statList = updatedStatList; } + String coordinate = String.format("chr%s:%d-%d (%s strand)", chr, beginCoor, endCoor, strand); int height = FIGURE_STARTY; int left = FIGURE_STARTX + (int) (cellLine.length() * CELLLINE_CHAR_LENGTH / 2 * 1.3); @@ -204,6 +198,16 @@ public void drawASMPattern(ReportSummary reportSummary, PatternResult patternWit String coordinate = String.format("chr%s:%d-%d (%s strand)", chr, beginCoor, endCoor, strand); List statList = data.getStatList(); + if (strand.equals("-")) { + patternWithAllele.getCpGList() + .forEach(cpgPattern -> cpgPattern.setPosition(refLength - cpgPattern.getPosition() - 2)); + patternWithoutAllele.getCpGList() + .forEach(cpgPattern -> cpgPattern.setPosition(refLength - cpgPattern.getPosition() - 2)); + for (int i = 0; i < patternWithAllele.getAlleleList().size(); i++) { + patternWithAllele.getAlleleList().set(i, refLength - patternWithAllele.getAlleleList().get(i) - 2); + } + } + int height = FIGURE_STARTY; int left = FIGURE_STARTX + (int) (cellLine.length() * CELLLINE_CHAR_LENGTH / 2 * 1.3); int imageWidth = left + ((refLength * BPWIDTH + 13 * 20) > coordinate.length() * COMMON_FONT_SIZE / 2 ? refLength * BPWIDTH + 13 * 20 : coordinate diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java index c2a38a4..9635c13 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/IO.java @@ -5,22 +5,15 @@ import edu.cwru.cbc.BSPAT.DataType.MappingSummary; import javax.servlet.http.Part; -import java.io.BufferedReader; -import java.io.File; -import java.io.FileReader; -import java.io.IOException; +import java.io.*; import java.util.ArrayList; import java.util.HashMap; import java.util.List; +import java.util.Map; public class IO { /** * read coordinates file - * - * @param coorPath - * @param coorFileName - * @return coordinateHash - * @throws IOException */ public static HashMap readCoordinates(String coorPath, String coorFileName) { /** @@ -58,6 +51,18 @@ public static HashMap readCoordinates(String coorPath, Strin return coordinateHash; } + public static void writeCoordinates(String outFileName, Map coorHashMap) throws + IOException { + try (BufferedWriter writer = new BufferedWriter(new FileWriter(outFileName))) { + for (String key : coorHashMap.keySet()) { + Coordinate coor = coorHashMap.get(key); + writer.write( + String.format("%s\t%s\t%s\t%s\t%s\n", key, coor.getChr(), coor.getStrand(), coor.getStart(), + coor.getEnd())); + } + } + } + public static void createFolder(String path) { File folder = new File(path); if (!folder.isDirectory()) { diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java index 1afe409..346901a 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/ReadAnalysisResult.java @@ -35,6 +35,7 @@ private void readStatFile(String ID) throws IOException { if (line == null) { throw new RuntimeException("analysis report is empty!"); } + int targetLength = Integer.parseInt(line.split("\t")[1]); // skip 6 lines for (int i = 0; i < 9; i++) { statBuffReader.readLine(); @@ -47,7 +48,11 @@ private void readStatFile(String ID) throws IOException { break; } // start from target start. 0-based. - CpGStatistics cpgStat = new CpGStatistics(Integer.parseInt(items[0]) - targetStart); + int pos = Integer.parseInt(items[0]) - targetStart; + if (coordinate.getStrand().equals("-")) { + pos = targetLength - pos - 2; + } + CpGStatistics cpgStat = new CpGStatistics(pos); cpgStat.setMethylLevel(Double.parseDouble(items[1])); statList.add(cpgStat); line = statBuffReader.readLine(); @@ -74,31 +79,36 @@ public List readPatternFile(String region, String patternType) th while (line != null) { items = line.split("\t"); + String patternString = items[0]; + if (coordinate.getStrand().equals("-")) { + patternString = new StringBuilder(items[0]).reverse().toString(); + } patternResult = new PatternResult(); for (int i = 0; i < regionLength; i++) { CpGSitePattern cpg; - if (items[0].charAt(i) == '*') { + if (patternString.charAt(i) == '*') { cpg = new CpGSitePattern(i, false); - if (i + 1 < regionLength && items[0].charAt(i + 1) == '*') { + if (i + 1 < regionLength && patternString.charAt(i + 1) == '*') { i++; } else if (i == 0) { cpg = new CpGSitePattern(i - 1, false); - } else if (items[0].charAt(i - 1) != '-') { + } else if (patternString.charAt(i - 1) != '-') { cpg = new CpGSitePattern(i - 1, false); } patternResult.addCpG(cpg); - } else if (items[0].charAt(i) == '@') { + } else if (patternString.charAt(i) == '@') { cpg = new CpGSitePattern(i, true); - if (i + 1 < regionLength && items[0].charAt(i + 1) == '@') { + if (i + 1 < regionLength && patternString.charAt(i + 1) == '@') { i++; } else if (i == 0) { cpg = new CpGSitePattern(i - 1, true); - } else if (items[0].charAt(i - 1) != '-') { + } else if (patternString.charAt(i - 1) != '-') { cpg = new CpGSitePattern(i - 1, false); } patternResult.addCpG(cpg); - } else if (items[0].charAt(i) == 'A' || items[0].charAt(i) == 'C' || items[0].charAt(i) == 'G' || - items[0].charAt(i) == 'T') { + } else if (patternString.charAt(i) == 'A' || patternString.charAt(i) == 'C' || patternString.charAt( + i) == 'G' || + patternString.charAt(i) == 'T') { patternResult.addAllele(i); } } diff --git a/BSPAT/src/edu/cwru/cbc/BSPAT/core/Utilities.java b/BSPAT/src/edu/cwru/cbc/BSPAT/core/Utilities.java index 1ed4f7b..542a23e 100644 --- a/BSPAT/src/edu/cwru/cbc/BSPAT/core/Utilities.java +++ b/BSPAT/src/edu/cwru/cbc/BSPAT/core/Utilities.java @@ -78,18 +78,11 @@ public static void convertPSLtoCoorPair(String path, String outFileName) throws } } } - try (BufferedWriter writer = new BufferedWriter(new FileWriter(path + outFileName))) { - for (String key : coorHashMap.keySet()) { - Coordinate coor = coorHashMap.get(key); - writer.write( - String.format("%s\t%s\t%s\t%s\t%s\n", key, coor.getChr(), coor.getStrand(), coor.getStart(), - coor.getEnd())); - } - } if (coorHashMap.size() == 0) { throw new RuntimeException( "No correct coordinate found for given reference file. Please double check your reference file"); } + IO.writeCoordinates(path + outFileName, coorHashMap); } // delete folder content recursively diff --git a/BSPAT/web/manualAnalysis.jsp b/BSPAT/web/manualAnalysis.jsp index a37c977..2d894c7 100644 --- a/BSPAT/web/manualAnalysis.jsp +++ b/BSPAT/web/manualAnalysis.jsp @@ -177,9 +177,7 @@

If no target coordinate file uploaded, by default BSPAT will use a <%=BSSeqAnalysis.DEFAULT_TARGET_LENGTH%>bp region start from the first CpG in the reference. If this region exceeds the end of reference, a region from the first CpG to the - end of reference will be used. If there is no CpG found in the reference, - a <%=BSSeqAnalysis.DEFAULT_TARGET_LENGTH%>bp region start from the beginning of reference - will be used.

+ end of reference will be used.

Notice: In the analysis procedure, only sequences fully covering target region will be From 1956ef48ce91f36116e0d132b0baf317d5f5734f Mon Sep 17 00:00:00 2001 From: lancelothk Date: Mon, 3 Aug 2015 22:37:37 -0400 Subject: [PATCH 14/16] update version --- BSPAT/web/about.jsp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BSPAT/web/about.jsp b/BSPAT/web/about.jsp index 063f1d0..3cc8f25 100644 --- a/BSPAT/web/about.jsp +++ b/BSPAT/web/about.jsp @@ -15,7 +15,7 @@

- Version: 2.2.1-beta
+ Version: 2.2.2-beta

From a501f9ed88e3ee68ea546fc576090f33f3a49ae1 Mon Sep 17 00:00:00 2001 From: lancelothk Date: Mon, 3 Aug 2015 22:55:35 -0400 Subject: [PATCH 15/16] remove null case of targetFileName in analysisResult page. --- BSPAT/web/analysisResult.jsp | 11 ----------- 1 file changed, 11 deletions(-) diff --git a/BSPAT/web/analysisResult.jsp b/BSPAT/web/analysisResult.jsp index 7b8f37f..f8f9785 100644 --- a/BSPAT/web/analysisResult.jsp +++ b/BSPAT/web/analysisResult.jsp @@ -10,7 +10,6 @@ <%@ page import="edu.cwru.cbc.BSPAT.DataType.Constant, edu.cwru.cbc.BSPAT.DataType.Experiment" %> <%@ page import="edu.cwru.cbc.BSPAT.DataType.PatternLink" %> -<%@ page import="edu.cwru.cbc.BSPAT.core.BSSeqAnalysis" %> <%@ page import="edu.cwru.cbc.BSPAT.core.ReportSummary" %> <%@ page import="edu.cwru.cbc.BSPAT.core.Utilities" %> @@ -149,19 +148,9 @@ Target coordinates used: - <% - if (constant.targetFileName == null) { - %> - Use default first <%=BSSeqAnalysis.DEFAULT_TARGET_LENGTH%>bp as target region - <% - } else { - %> ><%=constant.targetFileName%> - <% - } - %>

From e022fa9e1be928830c449c63f5bb5a8fab15a879 Mon Sep 17 00:00:00 2001 From: lancelothk Date: Tue, 9 Feb 2016 20:41:53 -0500 Subject: [PATCH 16/16] merge showTargetCoor --- .idea/artifacts/BSPAT.xml | 2 +- .idea/artifacts/BSPAT_war_exploded.xml | 2 +- BSPAT/BSPAT.iml | 2 +- BSPAT/src/edu/cwru/cbc/BSPAT/core/DrawPattern.java | 10 +++++----- BSPAT/web/WEB-INF/config.properties | 4 ++-- BSPAT_analysis/BSPAT_analysis.iml | 1 + 6 files changed, 11 insertions(+), 10 deletions(-) diff --git a/.idea/artifacts/BSPAT.xml b/.idea/artifacts/BSPAT.xml index b0d9105..52cda20 100644 --- a/.idea/artifacts/BSPAT.xml +++ b/.idea/artifacts/BSPAT.xml @@ -14,8 +14,8 @@ - + diff --git a/.idea/artifacts/BSPAT_war_exploded.xml b/.idea/artifacts/BSPAT_war_exploded.xml index ed82a36..b657e77 100644 --- a/.idea/artifacts/BSPAT_war_exploded.xml +++ b/.idea/artifacts/BSPAT_war_exploded.xml @@ -14,8 +14,8 @@ - + diff --git a/BSPAT/BSPAT.iml b/BSPAT/BSPAT.iml index 8941c51..c6aeb09 100644 --- a/BSPAT/BSPAT.iml +++ b/BSPAT/BSPAT.iml @@ -42,7 +42,6 @@ - @@ -54,6 +53,7 @@ +