From 8dbeb6ea9ad31bcdd48ec4daddada3e83d8eefff Mon Sep 17 00:00:00 2001 From: Michael Thornton Date: Thu, 14 Dec 2023 13:16:52 -0800 Subject: [PATCH] Remove was_informed_by from WorkflowExecution and update data examples --- ...s_set-incomplete-string-ended_at_time.yaml | 1 - ...analysis_set-non-string-ended_at_time.yaml | 2 +- ...-undefined-analytical_sample_set-slot.yaml | 3 +- ...ty-invalid-missing_execution_resource.yaml | 1 - ...nvalid_execution_resource_not_in_enum.yaml | 1 - .../invalid/MetagenomeSequencing-bad_id.yaml | 3 - .../MetagenomeSequencing-no_parthood.yaml | 3 - .../NomAnalysisActivity-remove_used.yaml | 1 - ...CAnalysis-invalid-has-was_informed_by.yaml | 24 ++ .../Database-MetabolomicsAnalysis-1.yaml | 1 - .../Database-img_mg_annotation_objects.yaml | 114 ---------- src/data/valid/Database-mags.yaml | 2 - .../valid/Database-metagenome-assembly.yaml | 3 - ...ase-neon_Biosample_to_DataObject_NEON.json | 207 ------------------ ...ase-neon_Biosample_to_DataObject_NEON.yaml | 1 - src/data/valid/Database-nom_analysis_set.yaml | 1 - .../Database-with-MetagenomeSequencing.yaml | 3 - src/data/valid/MetabolomicsAnalysis-1.yaml | 1 - ...cing-from-metagenome_seequencing_json.yaml | 3 - src/data/valid/ReadQcAnalysis-1.yaml | 1 - src/schema/workflow_execution_activity.yaml | 1 - 21 files changed, 26 insertions(+), 351 deletions(-) create mode 100644 src/data/invalid/ReadQCAnalysis-invalid-has-was_informed_by.yaml delete mode 100644 src/data/valid/Database-neon_Biosample_to_DataObject_NEON.json diff --git a/src/data/invalid/Database-nom_analysis_set-incomplete-string-ended_at_time.yaml b/src/data/invalid/Database-nom_analysis_set-incomplete-string-ended_at_time.yaml index 2d14111a28..9412e87573 100644 --- a/src/data/invalid/Database-nom_analysis_set-incomplete-string-ended_at_time.yaml +++ b/src/data/invalid/Database-nom_analysis_set-incomplete-string-ended_at_time.yaml @@ -11,4 +11,3 @@ nom_analysis_set: type: xxx started_at_time: "2018-11-111" ended_at_time: "2018-11-13T20:20:39+00:00" - was_informed_by: nmdc:act-99-abcdefg diff --git a/src/data/invalid/Database-nom_analysis_set-non-string-ended_at_time.yaml b/src/data/invalid/Database-nom_analysis_set-non-string-ended_at_time.yaml index 31293bd51e..fe64ff2977 100644 --- a/src/data/invalid/Database-nom_analysis_set-non-string-ended_at_time.yaml +++ b/src/data/invalid/Database-nom_analysis_set-non-string-ended_at_time.yaml @@ -11,4 +11,4 @@ nom_analysis_set: type: xxx started_at_time: "2018-11-13T20:20:39+00:00" ended_at_time: 2018-11-13T20:20:39+00:00 - was_informed_by: nmdc:act-99-abcdefg + diff --git a/src/data/invalid/Database-using-undefined-analytical_sample_set-slot.yaml b/src/data/invalid/Database-using-undefined-analytical_sample_set-slot.yaml index 49512bb21f..7afe7ddbf9 100644 --- a/src/data/invalid/Database-using-undefined-analytical_sample_set-slot.yaml +++ b/src/data/invalid/Database-using-undefined-analytical_sample_set-slot.yaml @@ -1,5 +1,4 @@ analytical_sample_set: # slot not defined - id: nmdc:ansm-99-dtTMNb name: WOOD_024-M-20190715-COMP-DNA1 - #is was_informed_by the right slot? The value of this slot should be the id from a PlannedProcess (ie extraction) - was_informed_by: nmdc:extr-1235 + diff --git a/src/data/invalid/MetabolomicsAnalysisActivity-invalid-missing_execution_resource.yaml b/src/data/invalid/MetabolomicsAnalysisActivity-invalid-missing_execution_resource.yaml index 229f66a7a8..1fd43ea015 100644 --- a/src/data/invalid/MetabolomicsAnalysisActivity-invalid-missing_execution_resource.yaml +++ b/src/data/invalid/MetabolomicsAnalysisActivity-invalid-missing_execution_resource.yaml @@ -1,7 +1,6 @@ id: nmdc:wfmb-99-ABCDEF started_at_time: '2021-08-05T14:48:51+00:00' ended_at_time: '2021-09-15T10:13:20+00:00' -was_informed_by: nmdc:a1 git_url: https://example.org/WorkflowExecutionActivity has_input: - nmdc:i1 diff --git a/src/data/invalid/MetabolomicsAnalysisActivity-invalid_execution_resource_not_in_enum.yaml b/src/data/invalid/MetabolomicsAnalysisActivity-invalid_execution_resource_not_in_enum.yaml index 47f8eec879..97307655a2 100644 --- a/src/data/invalid/MetabolomicsAnalysisActivity-invalid_execution_resource_not_in_enum.yaml +++ b/src/data/invalid/MetabolomicsAnalysisActivity-invalid_execution_resource_not_in_enum.yaml @@ -1,7 +1,6 @@ id: nmdc:wfmb-99-ABCDEF started_at_time: '2021-08-05T14:48:51+00:00' ended_at_time: '2021-09-15T10:13:20+00:00' -was_informed_by: nmdc:a1 execution_resource: NERSC - Cori git_url: https://example.org/WorkflowExecutionActivity has_input: diff --git a/src/data/invalid/MetagenomeSequencing-bad_id.yaml b/src/data/invalid/MetagenomeSequencing-bad_id.yaml index 7785e392d6..eba2249b9c 100644 --- a/src/data/invalid/MetagenomeSequencing-bad_id.yaml +++ b/src/data/invalid/MetagenomeSequencing-bad_id.yaml @@ -12,9 +12,6 @@ version: v1.0.0 # or referential integrity violations has_output: - nmdc:22afa3d49b73eaec2e9787a6b88fbdc3 -# legacy was_informed_by id? validator won't catch pattern violations -# or referential integrity violations -was_informed_by: gold:Gp0213371 name: Sequencing Activity for nmdc:mga0vx38 started_at_time: '2021-08-05T14:48:51+00:00' ended_at_time: '2021-09-15T10:13:20+00:00' diff --git a/src/data/invalid/MetagenomeSequencing-no_parthood.yaml b/src/data/invalid/MetagenomeSequencing-no_parthood.yaml index d1567f55f1..be9579bba0 100644 --- a/src/data/invalid/MetagenomeSequencing-no_parthood.yaml +++ b/src/data/invalid/MetagenomeSequencing-no_parthood.yaml @@ -11,9 +11,6 @@ version: v1.0.0 # or referential integrity violations has_output: - nmdc:22afa3d49b73eaec2e9787a6b88fbdc3 -# legacy was_informed_by id? validator won't catch pattern violations -# or referential integrity violations -was_informed_by: gold:Gp0213371 name: Sequencing Activity for nmdc:mga0vx38 started_at_time: '2021-08-05T14:48:51+00:00' ended_at_time: '2021-09-15T10:13:20+00:00' diff --git a/src/data/invalid/NomAnalysisActivity-remove_used.yaml b/src/data/invalid/NomAnalysisActivity-remove_used.yaml index 78da599db2..b2af3c2450 100644 --- a/src/data/invalid/NomAnalysisActivity-remove_used.yaml +++ b/src/data/invalid/NomAnalysisActivity-remove_used.yaml @@ -12,5 +12,4 @@ nom_analysis_activity_set: type: nmdc:NomAnalysisActivity started_at_time: "2018-11-13T20:20:39+00:00" ended_at_time: "2018-11-13T20:20:39+00:00" - was_informed_by: nmdc:act-99-abcdefg used: 12T_FTICR_B diff --git a/src/data/invalid/ReadQCAnalysis-invalid-has-was_informed_by.yaml b/src/data/invalid/ReadQCAnalysis-invalid-has-was_informed_by.yaml new file mode 100644 index 0000000000..1f982cc625 --- /dev/null +++ b/src/data/invalid/ReadQCAnalysis-invalid-has-was_informed_by.yaml @@ -0,0 +1,24 @@ +id: nmdc:wfrqc-99-ABCDEF +ended_at_time: '2021-09-15T10:13:20+00:00' +execution_resource: NERSC-Perlmutter +git_url: git_url1 +input_base_count: 300.0 +input_read_bases: 300.0 +input_read_count: 10.0 +name: name1 +output_base_count: 100.0 +output_read_bases: 100.0 +output_read_count: 3.0 +started_at_time: '2021-08-05T14:48:51+00:00' +type: type1 +part_of: "nmdc:wfch-11-ab" +was_informed_by: "nmdc:wfch-99-qwertyuiop" +has_input: + - "jgi:534819030d87850d7aea2a16" +has_output: + - "nmdc:ae40d7ae535c92b6d347915d8b1ac125" + - "nmdc:bd723452a107e973fcc6734ff7894bb9" +#part_of: +#used: used1 +#version: version1 +#was_associated_with: \ No newline at end of file diff --git a/src/data/valid/Database-MetabolomicsAnalysis-1.yaml b/src/data/valid/Database-MetabolomicsAnalysis-1.yaml index 4a9aaeeae3..dfa6a0cb79 100644 --- a/src/data/valid/Database-MetabolomicsAnalysis-1.yaml +++ b/src/data/valid/Database-MetabolomicsAnalysis-1.yaml @@ -3,7 +3,6 @@ metabolomics_analysis_set: name: Metabolomics Analysis Activity for nmdc:wfmb-99-ABCDEF started_at_time: '2021-08-05T14:48:51+00:00' ended_at_time: '2021-09-15T10:13:20+00:00' - was_informed_by: nmdc:a1 execution_resource: NERSC-Cori part_of: nmdc:wfch-11-ab git_url: https://example.org/WorkflowExecutionActivity diff --git a/src/data/valid/Database-img_mg_annotation_objects.yaml b/src/data/valid/Database-img_mg_annotation_objects.yaml index 81f861b029..2eb5f84c52 100644 --- a/src/data/valid/Database-img_mg_annotation_objects.yaml +++ b/src/data/valid/Database-img_mg_annotation_objects.yaml @@ -10,7 +10,6 @@ workflow_execution_set: - nmdc:a79973ef9a0c96d13fa19b2725b21d17 - nmdc:1055b8fab0f63a1e56312813f47897ec started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0153825 execution_resource: NERSC-Cori part_of: nmdc:wfch-11-ab type: nmdc:MetagenomeAnnotation @@ -27,7 +26,6 @@ workflow_execution_set: - nmdc:c09c5f5c4f776e6250cf35003e939729 - nmdc:fd3023efdffe55105bc192f5b6cb4675 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119849 execution_resource: NERSC-Cori part_of: nmdc:wfch-11-ab type: nmdc:MetagenomeAnnotation @@ -44,7 +42,6 @@ workflow_execution_set: - nmdc:c93e3ebaf3c21c50bb1071d0e07daa48 - nmdc:6e16b6f3d73dc771eba4c729600c9551 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119850 execution_resource: NERSC-Cori part_of: nmdc:wfch-11-ab type: nmdc:MetagenomeAnnotation @@ -61,7 +58,6 @@ workflow_execution_set: - nmdc:f8219a779a150e71c672dd2bfd695365 - nmdc:adfd5d1e9ec99ea5917d8b9efdbd9130 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119851 execution_resource: NERSC-Cori part_of: nmdc:wfch-12-ab type: nmdc:MetagenomeAnnotation @@ -78,7 +74,6 @@ workflow_execution_set: - nmdc:18c7f9fe5340509f00326c70c1815e88 - nmdc:4b43a24ab20530a72e06a8721b2c09db started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119852 execution_resource: NERSC-Cori part_of: nmdc:wfch-13-ab type: nmdc:MetagenomeAnnotation @@ -95,7 +90,6 @@ workflow_execution_set: - nmdc:c0c580b59189351b4f4919701e4db0f2 - nmdc:14e390786d1f1eb60835aca96081ab23 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119853 execution_resource: NERSC-Cori part_of: nmdc:wfch-13-ab type: nmdc:MetagenomeAnnotation @@ -112,7 +106,6 @@ workflow_execution_set: - nmdc:dba970c890226f16b008f8043ca38d9b - nmdc:b476e6c11fed4a3254eda4d15a4183c7 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119854 execution_resource: NERSC-Cori part_of: nmdc:wfch-14-ab type: nmdc:MetagenomeAnnotation @@ -129,7 +122,6 @@ workflow_execution_set: - nmdc:bb8a58ce8c8850f95dc84aa49a7a96f7 - nmdc:3a05f63e1899f82d11d931adfe69d86a started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119855 execution_resource: NERSC-Cori part_of: nmdc:wfch-14-ab type: nmdc:MetagenomeAnnotation @@ -146,7 +138,6 @@ workflow_execution_set: - nmdc:42164be43a9ab6da393c7d48825e289e - nmdc:72aaf6784de9aa35be58e12898bff353 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119856 execution_resource: NERSC-Cori part_of: nmdc:wfch-15-ab type: nmdc:MetagenomeAnnotation @@ -163,7 +154,6 @@ workflow_execution_set: - nmdc:5a77bb24847fcbf1c3fec6c40aa2ac14 - nmdc:89ef0619642dead830035ac9389ca802 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119857 execution_resource: NERSC-Cori part_of: nmdc:wfch-16-ab type: nmdc:MetagenomeAnnotation @@ -180,7 +170,6 @@ workflow_execution_set: - nmdc:0b7a5694aefdea2070dd1b21a21a9abb - nmdc:43157d8de38b673ce4a4d70ee3a1198c started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119858 execution_resource: NERSC-Cori part_of: nmdc:wfch-17-ab type: nmdc:MetagenomeAnnotation @@ -197,7 +186,6 @@ workflow_execution_set: - nmdc:eb09f7f461ad13a47bf5609cdcfc853c - nmdc:10128acfa04b42839c133fe298eab941 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119859 execution_resource: NERSC-Cori part_of: nmdc:wfch-18-ab type: nmdc:MetagenomeAnnotation @@ -214,7 +202,6 @@ workflow_execution_set: - nmdc:613152955d79f4344828738fb898d679 - nmdc:959ef4ff2d105052b094138aa09b5c94 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119860 execution_resource: NERSC-Cori part_of: nmdc:wfch-19-ab type: nmdc:MetagenomeAnnotation @@ -231,7 +218,6 @@ workflow_execution_set: - nmdc:1712f2bb1fa749515ce0bf2b34f8b559 - nmdc:0f06cb228b08e2aee24c65444d0bfc21 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119861 execution_resource: NERSC-Cori part_of: nmdc:wfch-20-ab type: nmdc:MetagenomeAnnotation @@ -248,7 +234,6 @@ workflow_execution_set: - nmdc:19e4e0238ac9c1d07646431ee62fa2d9 - nmdc:d8e967e38a491678164ab203551aad61 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119862 execution_resource: NERSC-Cori part_of: nmdc:wfch-21-ab type: nmdc:MetagenomeAnnotation @@ -265,7 +250,6 @@ workflow_execution_set: - nmdc:8be139ccce758a8845092122546ff2b3 - nmdc:46cf62901adcbcb2ca2c890b6dc8e6bd started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119863 execution_resource: NERSC-Cori part_of: nmdc:wfch-22-ab type: nmdc:MetagenomeAnnotation @@ -282,7 +266,6 @@ workflow_execution_set: - nmdc:b803f40f00f0c9988dd5968acd4821cb - nmdc:3695d84852c6345c02f5f1c3e3f3a423 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119864 execution_resource: NERSC-Cori part_of: nmdc:wfch-23-ab type: nmdc:MetagenomeAnnotation @@ -299,7 +282,6 @@ workflow_execution_set: - nmdc:73e37fa7c4626d47580d5705cb656383 - nmdc:9f23cbec97a89ce503564d05b061f37f started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119865 execution_resource: NERSC-Cori part_of: nmdc:wfch-24-ab type: nmdc:MetagenomeAnnotation @@ -316,7 +298,6 @@ workflow_execution_set: - nmdc:2de8312087081f9aeac56c56195a5fc2 - nmdc:5d1bb402cf5170de632179f2515a224f started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119866 execution_resource: NERSC-Cori part_of: nmdc:wfch-25-ab type: nmdc:MetagenomeAnnotation @@ -333,7 +314,6 @@ workflow_execution_set: - nmdc:b20ef196169b86e1498e45194adeff8b - nmdc:fd11757a61a2400b5ed8077c62cc97b9 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119867 execution_resource: NERSC-Cori part_of: nmdc:wfch-26-ab type: nmdc:MetagenomeAnnotation @@ -350,7 +330,6 @@ workflow_execution_set: - nmdc:3c788da6e9004cd3ec276d5e44b19548 - nmdc:804bc97cd8e16289290024ea3a7edbde started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119868 execution_resource: NERSC-Cori part_of: nmdc:wfch-27-ab type: nmdc:MetagenomeAnnotation @@ -367,7 +346,6 @@ workflow_execution_set: - nmdc:c46f4c6ee971aff627dcbfc8f1e3a9e8 - nmdc:431354e60f7a35b67c2f7ec52b955808 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119869 execution_resource: NERSC-Cori part_of: nmdc:wfch-28-ab type: nmdc:MetagenomeAnnotation @@ -384,7 +362,6 @@ workflow_execution_set: - nmdc:977d1fc2445d1aecd5f30e0197535af9 - nmdc:4b204c8e49c59d862209579b79c44545 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119870 execution_resource: NERSC-Cori part_of: nmdc:wfch-29-ab type: nmdc:MetagenomeAnnotation @@ -401,7 +378,6 @@ workflow_execution_set: - nmdc:8c6e1665a12e9478f7f13b9177b08083 - nmdc:b2f6e385af8cbe49df3044d523da5c82 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0119871 execution_resource: NERSC-Cori part_of: nmdc:wfch-30-ab type: nmdc:MetagenomeAnnotation @@ -418,7 +394,6 @@ workflow_execution_set: - nmdc:be62e3b68916c8077955d0b3d3aaf5aa - nmdc:feb21db71dc44afceeb88bb725315b42 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127623 execution_resource: NERSC-Cori part_of: nmdc:wfch-31-ab type: nmdc:MetagenomeAnnotation @@ -435,7 +410,6 @@ workflow_execution_set: - nmdc:075262a23b12fd4da073a973a5b6cf15 - nmdc:3fb3966095303ea8aa7f27bff3e9db50 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127624 execution_resource: NERSC-Cori part_of: nmdc:wfch-32-ab type: nmdc:MetagenomeAnnotation @@ -452,7 +426,6 @@ workflow_execution_set: - nmdc:c6fb34fc2da63a5cc46522279e768db9 - nmdc:bf23db2dda841d77cf51b7c9120ba503 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127625 execution_resource: NERSC-Cori part_of: nmdc:wfch-33-ab type: nmdc:MetagenomeAnnotation @@ -469,7 +442,6 @@ workflow_execution_set: - nmdc:11741b35b589852f2b652d1f73afb663 - nmdc:f1b6a4b001b67ec72eb5b5411e1321c9 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127626 execution_resource: NERSC-Cori part_of: nmdc:wfch-34-ab type: nmdc:MetagenomeAnnotation @@ -486,7 +458,6 @@ workflow_execution_set: - nmdc:fec0b3842897bbce9166a628c4c2d7a0 - nmdc:48ab9737528d088ffde37b733e3f728f started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127627 execution_resource: NERSC-Cori part_of: nmdc:wfch-35-ab type: nmdc:MetagenomeAnnotation @@ -503,7 +474,6 @@ workflow_execution_set: - nmdc:ec55b61e1204cde7fe61841179b88b53 - nmdc:bd55dfd59ed0aa7ea685734c5b7ecbab started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127628 execution_resource: NERSC-Cori part_of: nmdc:wfch-36-ab type: nmdc:MetagenomeAnnotation @@ -520,7 +490,6 @@ workflow_execution_set: - nmdc:9559ebd9a8921ff8ae9f89c2ffcef6f7 - nmdc:9b3fb3e409e3d3128a8a43cc58d32a95 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127629 execution_resource: NERSC-Cori part_of: nmdc:wfch-37-ab type: nmdc:MetagenomeAnnotation @@ -537,7 +506,6 @@ workflow_execution_set: - nmdc:6bca5ad106b3519416205a82d3a14b16 - nmdc:f921989651475b06052058126db54de9 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127630 execution_resource: NERSC-Cori part_of: nmdc:wfch-38-ab type: nmdc:MetagenomeAnnotation @@ -554,7 +522,6 @@ workflow_execution_set: - nmdc:04c97ac7af06bf37da8f1ffe827e454d - nmdc:d57f28027b2d6f82b96f5413bf8c9a59 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127631 execution_resource: NERSC-Cori part_of: nmdc:wfch-39-ab type: nmdc:MetagenomeAnnotation @@ -571,7 +538,6 @@ workflow_execution_set: - nmdc:a89e8af0fc6daf895e7a87f1ff7087f2 - nmdc:89b895fbf3c13801ddba22ff59bb385a started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127632 execution_resource: NERSC-Cori part_of: nmdc:wfch-40-ab type: nmdc:MetagenomeAnnotation @@ -588,7 +554,6 @@ workflow_execution_set: - nmdc:79fd564d59bf9fe4cfb2c771daa84f29 - nmdc:b18381667b4e7401e1bb58e8aede5d4a started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127633 execution_resource: NERSC-Cori part_of: nmdc:wfch-41-ab type: nmdc:MetagenomeAnnotation @@ -605,7 +570,6 @@ workflow_execution_set: - nmdc:3374b8708ae6b77b16cd01ce4f33ee72 - nmdc:1e286398d6b164538bbdefb9cc8a41e9 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127634 execution_resource: NERSC-Cori part_of: nmdc:wfch-42-ab type: nmdc:MetagenomeAnnotation @@ -622,7 +586,6 @@ workflow_execution_set: - nmdc:b2ee2639269e6d665f772fc8c4e31d07 - nmdc:e1cd02b3a92223d8e30e8d7c90837d9a started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127635 execution_resource: NERSC-Cori part_of: nmdc:wfch-43-ab type: nmdc:MetagenomeAnnotation @@ -639,7 +602,6 @@ workflow_execution_set: - nmdc:66d9d6751efad0b8019a565488f950a5 - nmdc:e3b57dff7ca37c0da6b7d4bfb4450d9c started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127636 execution_resource: NERSC-Cori part_of: nmdc:wfch-44-ab type: nmdc:MetagenomeAnnotation @@ -656,7 +618,6 @@ workflow_execution_set: - nmdc:c43a6b5a306a8f14aab780d8f1bf9c41 - nmdc:5f6b287493cde8cf8cb49348a2868aa6 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127637 execution_resource: NERSC-Cori part_of: nmdc:wfch-45-ab type: nmdc:MetagenomeAnnotation @@ -673,7 +634,6 @@ workflow_execution_set: - nmdc:17993d4fcfa7be4fd4488804d23b67c6 - nmdc:2ca3e1a0ba8007e86dedbec47e85adba started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127638 execution_resource: NERSC-Cori part_of: nmdc:wfch-46-ab type: nmdc:MetagenomeAnnotation @@ -690,7 +650,6 @@ workflow_execution_set: - nmdc:fccc8283a46f12babeed0b2c7cc4eebd - nmdc:d0452fefd4ad4f4cd10c974294bf9058 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127639 execution_resource: NERSC-Cori part_of: nmdc:wfch-47-ab type: nmdc:MetagenomeAnnotation @@ -707,7 +666,6 @@ workflow_execution_set: - nmdc:1fbb7302a6ad581085d561e9fd3ed802 - nmdc:812cf8b77747ff65cfd237158535d310 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127640 execution_resource: NERSC-Cori part_of: nmdc:wfch-48-ab type: nmdc:MetagenomeAnnotation @@ -724,7 +682,6 @@ workflow_execution_set: - nmdc:d10b0c9b0d5e646d09c570eb2e08b793 - nmdc:a33ac2dc640b7088767a99517f22421f started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127641 execution_resource: NERSC-Cori part_of: nmdc:wfch-49-ab type: nmdc:MetagenomeAnnotation @@ -741,7 +698,6 @@ workflow_execution_set: - nmdc:263acdd17bdb9ed72102610070da3d65 - nmdc:9e55f66e86f57487e23029b90a84c4a4 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127642 execution_resource: NERSC-Cori part_of: nmdc:wfch-50-ab type: nmdc:MetagenomeAnnotation @@ -758,7 +714,6 @@ workflow_execution_set: - nmdc:7434bd60874fc6d05530ee0652a9e18f - nmdc:d897fea88896a93843966962f6bbb7be started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127643 execution_resource: NERSC-Cori part_of: nmdc:wfch-51-ab type: nmdc:MetagenomeAnnotation @@ -775,7 +730,6 @@ workflow_execution_set: - nmdc:2c7d55cbee1f35793da90275740d3651 - nmdc:0973e6d47848f6677ced2a8d463670fa started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127644 execution_resource: NERSC-Cori part_of: nmdc:wfch-52-ab type: nmdc:MetagenomeAnnotation @@ -792,7 +746,6 @@ workflow_execution_set: - nmdc:2ab0820d09b9c331ec56d7d3e20552e6 - nmdc:06280b3737fbf704d850ac68da190166 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127645 execution_resource: NERSC-Cori part_of: nmdc:wfch-53-ab type: nmdc:MetagenomeAnnotation @@ -809,7 +762,6 @@ workflow_execution_set: - nmdc:646648c11733f7ab7ea23008729360ce - nmdc:94574634e1ccfe241af033259e27df1a started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127646 execution_resource: NERSC-Cori part_of: nmdc:wfch-54-ab type: nmdc:MetagenomeAnnotation @@ -826,7 +778,6 @@ workflow_execution_set: - nmdc:ec6d01297279eee2d4c03ecfda9309c9 - nmdc:a57c9b7f192351676e897b8187cf6641 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127647 execution_resource: NERSC-Cori part_of: nmdc:wfch-55-ab type: nmdc:MetagenomeAnnotation @@ -843,7 +794,6 @@ workflow_execution_set: - nmdc:d27fabc532b52dec4afa4673f920633a - nmdc:863f93ecf208a6e19f17d460d8e1a963 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127648 execution_resource: NERSC-Cori part_of: nmdc:wfch-56-ab type: nmdc:MetagenomeAnnotation @@ -860,7 +810,6 @@ workflow_execution_set: - nmdc:56c3ac34fb2f1c2ba7bcd9bd56be731a - nmdc:cff0a71781a84c7096ee79b39c3336f8 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127649 execution_resource: NERSC-Cori part_of: nmdc:wfch-57-ab type: nmdc:MetagenomeAnnotation @@ -877,7 +826,6 @@ workflow_execution_set: - nmdc:67dfacdfc27cb6b0ec4787e1a40d9547 - nmdc:714fb73a8b3011d0b2faea98eda477c3 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127651 execution_resource: NERSC-Cori part_of: nmdc:wfch-59-ab type: nmdc:MetagenomeAnnotation @@ -894,7 +842,6 @@ workflow_execution_set: - nmdc:48bb698de57cd77bf1ddda9004e89c01 - nmdc:6b39045cb99ca6220e27c4fa960f4dd1 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127652 execution_resource: NERSC-Cori part_of: nmdc:wfch-60-ab type: nmdc:MetagenomeAnnotation @@ -911,7 +858,6 @@ workflow_execution_set: - nmdc:658231efecf9d087ec2a6e9467f4e968 - nmdc:511ae319ddff2bdcbc3296d951e42d7e started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127653 execution_resource: NERSC-Cori part_of: nmdc:wfch-61-ab type: nmdc:MetagenomeAnnotation @@ -928,7 +874,6 @@ workflow_execution_set: - nmdc:deda4116aac7e262c0edf3358bb8e384 - nmdc:a9cf54b925e1c5b8c3e0299730f5a464 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127654 execution_resource: NERSC-Cori part_of: nmdc:wfch-62-ab type: nmdc:MetagenomeAnnotation @@ -945,7 +890,6 @@ workflow_execution_set: - nmdc:a31096eb3e473fd0c68d09096bc3fd85 - nmdc:05e2702ecae6ba0ba0b0898132850b9f started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127655 execution_resource: NERSC-Cori part_of: nmdc:wfch-63-ab type: nmdc:MetagenomeAnnotation @@ -962,7 +906,6 @@ workflow_execution_set: - nmdc:2819bbb349ca5bdbf311aeae6ada532b - nmdc:0c2ae5a86d4840a0b324d73977170f1e started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0127656 execution_resource: NERSC-Cori part_of: nmdc:wfch-64-ab type: nmdc:MetagenomeAnnotation @@ -979,7 +922,6 @@ workflow_execution_set: - nmdc:fc419491cce16671e828d76083252841 - nmdc:10117f9500d0dd54655a5d70195f7df5 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115664 execution_resource: NERSC-Cori part_of: nmdc:wfch-64-ab type: nmdc:MetagenomeAnnotation @@ -996,7 +938,6 @@ workflow_execution_set: - nmdc:51f3c008db6a106ee14e160f35f7d9f3 - nmdc:dcb8211231f718d57e22f8dea1efc6d0 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115675 execution_resource: NERSC-Cori part_of: nmdc:wfch-65-ab type: nmdc:MetagenomeAnnotation @@ -1013,7 +954,6 @@ workflow_execution_set: - nmdc:d325906b9b82b3bfc2fe8ed7321a828e - nmdc:2fba563f11988f4e30d2b4283c3c5487 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115673 execution_resource: NERSC-Cori part_of: nmdc:wfch-66-ab type: nmdc:MetagenomeAnnotation @@ -1030,7 +970,6 @@ workflow_execution_set: - nmdc:c0365d39cb481d6e0f729b587dac10c8 - nmdc:bfbd1bd1ad70307dd01b699ecc4ffb2a started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115677 execution_resource: NERSC-Cori part_of: nmdc:wfch-67-ab type: nmdc:MetagenomeAnnotation @@ -1047,7 +986,6 @@ workflow_execution_set: - nmdc:78a99f435ce2bdd6cd83ebb807dc0ef3 - nmdc:ac989404b8a9e07880788cfb061015ba started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115678 execution_resource: NERSC-Cori part_of: nmdc:wfch-68-ab type: nmdc:MetagenomeAnnotation @@ -1064,7 +1002,6 @@ workflow_execution_set: - nmdc:1b5b79d300bb60afffec76da4cda7f14 - nmdc:431860b46c896880c1d8d779fb2645ec started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115665 execution_resource: NERSC-Cori part_of: nmdc:wfch-69-ab type: nmdc:MetagenomeAnnotation @@ -1081,7 +1018,6 @@ workflow_execution_set: - nmdc:f5a4336c7ac10e908cfe90a61a991c65 - nmdc:ad6e88d469fbad7b0684afb933403a6c started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115671 execution_resource: NERSC-Cori part_of: nmdc:wfch-70-ab type: nmdc:MetagenomeAnnotation @@ -1098,7 +1034,6 @@ workflow_execution_set: - nmdc:70c8e0fc6e64b20e99a4c0f783014142 - nmdc:654201c4699079bdd923dcff52881c07 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115666 execution_resource: NERSC-Cori part_of: nmdc:wfch-71-ab @@ -1116,7 +1051,6 @@ workflow_execution_set: - nmdc:6de20d427454895dce6caeb7b9543c11 - nmdc:9c68523f458ee1f8ec395e1442b1f508 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115669 execution_resource: NERSC-Cori part_of: nmdc:wfch-72-ab type: nmdc:MetagenomeAnnotation @@ -1133,7 +1067,6 @@ workflow_execution_set: - nmdc:acdedd1c48e28e4f4e0d0679cae417f9 - nmdc:6f236cc8b728333fcf85e4f27873a500 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115667 execution_resource: NERSC-Cori part_of: nmdc:wfch-72-ab type: nmdc:MetagenomeAnnotation @@ -1150,7 +1083,6 @@ workflow_execution_set: - nmdc:5193d8fa7e151b96396afa8d61851af8 - nmdc:e3b04bb85be48814ca078ee871a9296b started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115676 execution_resource: NERSC-Cori part_of: nmdc:wfch-73-ab type: nmdc:MetagenomeAnnotation @@ -1167,7 +1099,6 @@ workflow_execution_set: - nmdc:f97c44951275f8b68fa94ded40fda756 - nmdc:b4764f173896dcb134d7c94c1ee13ca3 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115668 execution_resource: NERSC-Cori part_of: nmdc:wfch-74-ab type: nmdc:MetagenomeAnnotation @@ -1184,7 +1115,6 @@ workflow_execution_set: - nmdc:754074d3bcade65aba2a6f8236619ab7 - nmdc:a4b4c623457aa10161d88a9ac4eef522 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115663 execution_resource: NERSC-Cori part_of: nmdc:wfch-75-ab type: nmdc:MetagenomeAnnotation @@ -1201,7 +1131,6 @@ workflow_execution_set: - nmdc:7e531f55eba2bd29d5bb4b1af8417b7c - nmdc:f05ecf0db08d716edb7a3f499582a2b7 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115670 execution_resource: NERSC-Cori part_of: nmdc:wfch-76-ab type: nmdc:MetagenomeAnnotation @@ -1218,7 +1147,6 @@ workflow_execution_set: - nmdc:b0687d58e2803a41864c9d830977402b - nmdc:644d67586f9337bf4d12ff5859d4cd54 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115672 execution_resource: NERSC-Cori part_of: nmdc:wfch-77-ab type: nmdc:MetagenomeAnnotation @@ -1235,7 +1163,6 @@ workflow_execution_set: - nmdc:c70d6973abeb3ee231d3e38c3c5dced4 - nmdc:17f2fbdeb3f5891c37f2e9e43a40c7b1 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115674 execution_resource: NERSC-Cori part_of: nmdc:wfch-78-ab type: nmdc:MetagenomeAnnotation @@ -1252,7 +1179,6 @@ workflow_execution_set: - nmdc:21f3d777493f87403b60a4a1b3dd2f1b - nmdc:b63b42c7892b4a14e5661bca5bfa2419 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0115679 execution_resource: NERSC-Cori part_of: nmdc:wfch-79-ab type: nmdc:MetagenomeAnnotation @@ -1269,7 +1195,6 @@ workflow_execution_set: - nmdc:1d25e5266e86688b9e65764a9f181e27 - nmdc:3725668a447e1c7e7e639376a1017e8f started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321263 execution_resource: NERSC-Cori part_of: nmdc:wfch-80-ab type: nmdc:MetagenomeAnnotation @@ -1286,7 +1211,6 @@ workflow_execution_set: - nmdc:409f86c6fccbe946bc56108427b01108 - nmdc:e4e0da015bbaafeb9199ad669ae71702 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321264 execution_resource: NERSC-Cori part_of: nmdc:wfch-80-ab type: nmdc:MetagenomeAnnotation @@ -1303,7 +1227,6 @@ workflow_execution_set: - nmdc:1de4cc65fa1e329eccf2cc9982b126aa - nmdc:b91dc0c20caa465338c63c01e2c1328c started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321265 execution_resource: NERSC-Cori part_of: nmdc:wfch-81-ab type: nmdc:MetagenomeAnnotation @@ -1320,7 +1243,6 @@ workflow_execution_set: - nmdc:a98cf4ad6cc56d5a1992c1c5b8027525 - nmdc:e19fcc4f4eeb2ebaa6deec9f53e1e2d7 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321266 execution_resource: NERSC-Cori part_of: nmdc:wfch-82-ab type: nmdc:MetagenomeAnnotation @@ -1337,7 +1259,6 @@ workflow_execution_set: - nmdc:716d26a135a99c9efc8c49d4b294f8e8 - nmdc:ff9b33e360b07cf16501e4002cceb1a3 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321267 execution_resource: NERSC-Cori part_of: nmdc:wfch-83-ab type: nmdc:MetagenomeAnnotation @@ -1354,7 +1275,6 @@ workflow_execution_set: - nmdc:313edf6edf574cd30a06f3695c98c0fe - nmdc:8ebacf3cb9208f5788c4a664e2bb6155 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321268 execution_resource: NERSC-Cori part_of: nmdc:wfch-84-ab type: nmdc:MetagenomeAnnotation @@ -1371,7 +1291,6 @@ workflow_execution_set: - nmdc:8036d9e860e7c6ac63d62389b012cc39 - nmdc:1eebc50c86e6e560d910b68358c76117 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321269 execution_resource: NERSC-Cori part_of: nmdc:wfch-85-ab type: nmdc:MetagenomeAnnotation @@ -1388,7 +1307,6 @@ workflow_execution_set: - nmdc:f76b4199f7c1a19bbec3f8a3c39967c8 - nmdc:d325fdb48d28bb5e04b261496c897a80 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321270 execution_resource: NERSC-Cori part_of: nmdc:wfch-86-ab type: nmdc:MetagenomeAnnotation @@ -1405,7 +1323,6 @@ workflow_execution_set: - nmdc:1492b148b7432379040c78f4b1d84eed - nmdc:d5241932493adac238e254fe0ea0b1b3 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321271 execution_resource: NERSC-Cori part_of: nmdc:wfch-87-ab type: nmdc:MetagenomeAnnotation @@ -1422,7 +1339,6 @@ workflow_execution_set: - nmdc:311a2b8d368d7f20869eb709f6a2fbca - nmdc:456ee70f5d3428e1a1326bf3b3a3f45b started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321272 execution_resource: NERSC-Cori part_of: nmdc:wfch-88-ab type: nmdc:MetagenomeAnnotation @@ -1439,7 +1355,6 @@ workflow_execution_set: - nmdc:fd5fd05a55dad39734cb7845be8f1455 - nmdc:f6c682e41266abf2a82301cee11ecc2c started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321273 execution_resource: NERSC-Cori part_of: nmdc:wfch-89-ab type: nmdc:MetagenomeAnnotation @@ -1456,7 +1371,6 @@ workflow_execution_set: - nmdc:880903dfa10de6c316ea4b5648c65022 - nmdc:28399ee3579aabdd7a96181a85a36b08 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321274 execution_resource: NERSC-Cori part_of: nmdc:wfch-90-ab type: nmdc:MetagenomeAnnotation @@ -1473,7 +1387,6 @@ workflow_execution_set: - nmdc:ad8da930414a7a388eb050a8b6fc089f - nmdc:6f23809a438fa0ab8784393345dd9485 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321275 execution_resource: NERSC-Cori part_of: nmdc:wfch-91-ab type: nmdc:MetagenomeAnnotation @@ -1490,7 +1403,6 @@ workflow_execution_set: - nmdc:cbfb3e7e74bb881dcb516e1d0388a9f7 - nmdc:6c84c9ba98e6d4420568ccdee2d8f0ba started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321276 execution_resource: NERSC-Cori part_of: nmdc:wfch-92-ab type: nmdc:MetagenomeAnnotation @@ -1507,7 +1419,6 @@ workflow_execution_set: - nmdc:835275caf77ddcc493b4354cb4d10eab - nmdc:7222ad2fb0e606000ea88c4d22595c1b started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321277 execution_resource: NERSC-Cori part_of: nmdc:wfch-93-ab type: nmdc:MetagenomeAnnotation @@ -1524,7 +1435,6 @@ workflow_execution_set: - nmdc:2cd8a777b2b2f56a47e8f99269c2278e - nmdc:36c79ccbf21d3d76d92e670e24ca0321 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321278 execution_resource: NERSC-Cori part_of: nmdc:wfch-94-ab type: nmdc:MetagenomeAnnotation @@ -1541,7 +1451,6 @@ workflow_execution_set: - nmdc:1150c8570758aea8c9b32602ac9df694 - nmdc:3be5100c3d71a32afbe19ba3bd9648d2 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321279 execution_resource: NERSC-Cori part_of: nmdc:wfch-95-ab type: nmdc:MetagenomeAnnotation @@ -1558,7 +1467,6 @@ workflow_execution_set: - nmdc:ca620fc038f51501e1dd5af9bf085231 - nmdc:20def41369f21c85f890c13663dc7c38 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321280 execution_resource: NERSC-Cori part_of: nmdc:wfch-96-ab type: nmdc:MetagenomeAnnotation @@ -1575,7 +1483,6 @@ workflow_execution_set: - nmdc:27eb4ee0689bfa1ed5de639be9dfe4a4 - nmdc:5adfd50423654d4ee2a7ea1cb047903b started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321281 execution_resource: NERSC-Cori part_of: nmdc:wfch-97-ab type: nmdc:MetagenomeAnnotation @@ -1592,7 +1499,6 @@ workflow_execution_set: - nmdc:b4785d3de1e96579a0139fd62b46c2b1 - nmdc:64eb490c848063b2d2ec3a67e25e9fc0 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321282 execution_resource: NERSC-Cori part_of: nmdc:wfch-98-ab type: nmdc:MetagenomeAnnotation @@ -1609,7 +1515,6 @@ workflow_execution_set: - nmdc:371a4bc8b331c5a58f5eae72aa7f2ef2 - nmdc:dae48dbf003f88ae694fa4461cce315d started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321283 execution_resource: NERSC-Cori part_of: nmdc:wfch-99-ab type: nmdc:MetagenomeAnnotation @@ -1626,7 +1531,6 @@ workflow_execution_set: - nmdc:73c7f3cc99686ec1e603fa63596b904f - nmdc:79216bdd4f78c73571a7eba424e10b4c started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321284 execution_resource: NERSC-Cori part_of: nmdc:wfch-100-ab type: nmdc:MetagenomeAnnotation @@ -1643,7 +1547,6 @@ workflow_execution_set: - nmdc:4ce337ca93786854ba56d9869e14f591 - nmdc:deb40e1f540d8c3d4b50d76104b1a095 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321285 execution_resource: NERSC-Cori part_of: nmdc:wfch-101-ab type: nmdc:MetagenomeAnnotation @@ -1660,7 +1563,6 @@ workflow_execution_set: - nmdc:1272bd3b3af9bc77f17cc05e368bc7e0 - nmdc:5a4038e9f86c14507cb7a280cf311d84 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321286 execution_resource: NERSC-Cori part_of: nmdc:wfch-102-ab type: nmdc:MetagenomeAnnotation @@ -1677,7 +1579,6 @@ workflow_execution_set: - nmdc:f831f58e1761dcde174db82a8054d4a2 - nmdc:d058d233fb8da0fa70bf9306d698c2e1 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321287 execution_resource: NERSC-Cori part_of: nmdc:wfch-103-ab type: nmdc:MetagenomeAnnotation @@ -1694,7 +1595,6 @@ workflow_execution_set: - nmdc:c0e0818e6236ece3756233d62402530b - nmdc:42abcc0295b474652f5d7e3fd981eaf5 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321288 execution_resource: NERSC-Cori part_of: nmdc:wfch-104-ab type: nmdc:MetagenomeAnnotation @@ -1711,7 +1611,6 @@ workflow_execution_set: - nmdc:a1b616853e0d1dcddf8f8c17266a4dab - nmdc:e62a9d17906da4a73dd76b04f974d958 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321289 execution_resource: NERSC-Cori part_of: nmdc:wfch-105-ab type: nmdc:MetagenomeAnnotation @@ -1728,7 +1627,6 @@ workflow_execution_set: - nmdc:3617ad6fc98edf20a3b5b9b0bc90b302 - nmdc:848d1a34aad4d6966b3941735cf380b6 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321290 execution_resource: NERSC-Cori part_of: nmdc:wfch-106-ab type: nmdc:MetagenomeAnnotation @@ -1745,7 +1643,6 @@ workflow_execution_set: - nmdc:410f625da0eaebed66a6e8c18b0e53d0 - nmdc:bf28aaeaf947e64a6fa762f0a2146946 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321291 execution_resource: NERSC-Cori part_of: nmdc:wfch-107-ab type: nmdc:MetagenomeAnnotation @@ -1762,7 +1659,6 @@ workflow_execution_set: - nmdc:23725b4b671305a23b2f9bea1931dd68 - nmdc:b66392e039cbedc07b2674aa1dba6dac started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321292 execution_resource: NERSC-Cori part_of: nmdc:wfch-108-ab type: nmdc:MetagenomeAnnotation @@ -1779,7 +1675,6 @@ workflow_execution_set: - nmdc:92eec5b401629df8c01678ce2717c87b - nmdc:7eeac4fe7fa630ac5b85e864f3236f2c started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321293 execution_resource: NERSC-Cori part_of: nmdc:wfch-109-ab type: nmdc:MetagenomeAnnotation @@ -1796,7 +1691,6 @@ workflow_execution_set: - nmdc:a77caadf1701b22232ab50ffddce7d26 - nmdc:6b79f8e01cfeb858655b267f097ffb9c started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321294 execution_resource: NERSC-Cori part_of: nmdc:wfch-110-ab type: nmdc:MetagenomeAnnotation @@ -1813,7 +1707,6 @@ workflow_execution_set: - nmdc:0aabdc855939a32aa78d16892fb74a31 - nmdc:8105fb07db3565279cb50332e5fa69e2 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321295 execution_resource: NERSC-Cori part_of: nmdc:wfch-111-ab type: nmdc:MetagenomeAnnotation @@ -1830,7 +1723,6 @@ workflow_execution_set: - nmdc:6e7afaa7acf706291e43b65f87c94030 - nmdc:3ffa7a4a98b5106934e304d22cc2bd65 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321296 execution_resource: NERSC-Cori part_of: nmdc:wfch-112-ab type: nmdc:MetagenomeAnnotation @@ -1847,7 +1739,6 @@ workflow_execution_set: - nmdc:41f5b96405652c89c13226494fc3d472 - nmdc:69aedbed08dde951f5b5660697731685 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321297 execution_resource: NERSC-Cori part_of: nmdc:wfch-112-ab type: nmdc:MetagenomeAnnotation @@ -1864,7 +1755,6 @@ workflow_execution_set: - nmdc:cef441d37e63c1221a31e8fad178df3e - nmdc:cae5e9077fc171a1e33329bab7526ddc started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321298 execution_resource: NERSC-Cori part_of: nmdc:wfch-113-ab type: nmdc:MetagenomeAnnotation @@ -1881,7 +1771,6 @@ workflow_execution_set: - nmdc:fdd916457ddcf1bf5daf58de328918c7 - nmdc:54cc460952c8094aaace3e475ad49170 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321299 execution_resource: NERSC-Cori part_of: nmdc:wfch-113-ab type: nmdc:MetagenomeAnnotation @@ -1898,7 +1787,6 @@ workflow_execution_set: - nmdc:60c0ee336af5cc2039c3f7273e00975a - nmdc:ed394322e9312dba63b271c7484797a9 started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321300 execution_resource: NERSC-Cori part_of: nmdc:wfch-114-ab type: nmdc:MetagenomeAnnotation @@ -1915,7 +1803,6 @@ workflow_execution_set: - nmdc:fecf564c2c3f7150ad596624178c8c10 - nmdc:9cfd08fa7dac9d59c866d32fbcd79e8f started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321301 execution_resource: NERSC-Cori part_of: nmdc:wfch-115-ab type: nmdc:MetagenomeAnnotation @@ -1932,7 +1819,6 @@ workflow_execution_set: - nmdc:934ee6e733522628856c63b94e5527a3 - nmdc:9a583be5f87563056c19eb94042bf19d started_at_time: '2021-01-12T00:00:00+00:00' - was_informed_by: gold:Gp0321302 execution_resource: NERSC-Cori part_of: nmdc:wfch-116-ab type: nmdc:MetagenomeAnnotation diff --git a/src/data/valid/Database-mags.yaml b/src/data/valid/Database-mags.yaml index 783a256383..d46b2d2dc0 100644 --- a/src/data/valid/Database-mags.yaml +++ b/src/data/valid/Database-mags.yaml @@ -1,7 +1,6 @@ mags_set: - id: nmdc:wfmag-99-5MiDJM name: MAGs activiity 1781_86101 - was_informed_by: gold:Gp0115663 part_of: nmdc:wfch-11-ab started_at_time: '2021-01-10T00:00:00+00:00' ended_at_time: '2021-01-10T00:00:00+00:00' @@ -56,7 +55,6 @@ mags_set: - id: nmdc:wfmag-99-VOgM5i name: MAGs activiity 1781_86089 - was_informed_by: gold:Gp0115664 part_of: nmdc:wfch-12-ab started_at_time: '2021-01-10T00:00:00+00:00' ended_at_time: '2021-01-10T00:00:00+00:00' diff --git a/src/data/valid/Database-metagenome-assembly.yaml b/src/data/valid/Database-metagenome-assembly.yaml index 6b6f92f37a..30a5c080e6 100644 --- a/src/data/valid/Database-metagenome-assembly.yaml +++ b/src/data/valid/Database-metagenome-assembly.yaml @@ -1,7 +1,6 @@ metagenome_assembly_set: - id: nmdc:wfmgas-99-B7Vogx name: Metagenome assembly 1472_51277 - was_informed_by: gold:Gp0061273 part_of: nmdc:wfch-11-ab started_at_time: '2020-03-24T00:00:00+00:00' ended_at_time: '2020-03-25T00:00:00+00:00' @@ -45,7 +44,6 @@ metagenome_assembly_set: num_aligned_reads: 63046103 - id: nmdc:wfmgas-99-CvgXTq name: Metagenome assembly 1472_51278 - was_informed_by: gold:Gp0061274 part_of: nmdc:wfch-11-ab started_at_time: '2020-03-25T00:00:00+00:00' ended_at_time: '2020-03-25T00:00:00+00:00' @@ -89,7 +87,6 @@ metagenome_assembly_set: num_aligned_reads: 95369019 - id: nmdc:wfmgas-99-L9Z34K name: Metagenome assembly 1472_51279 - was_informed_by: gold:Gp0061275 part_of: nmdc:wfch-11-ab started_at_time: '2020-03-25T00:00:00+00:00' ended_at_time: '2020-03-25T00:00:00+00:00' diff --git a/src/data/valid/Database-neon_Biosample_to_DataObject_NEON.json b/src/data/valid/Database-neon_Biosample_to_DataObject_NEON.json deleted file mode 100644 index 8039dea9d1..0000000000 --- a/src/data/valid/Database-neon_Biosample_to_DataObject_NEON.json +++ /dev/null @@ -1,207 +0,0 @@ -{ - "library_preparation_set": [ - { - "id": "nmdc:libprp-99-abcdef", - "name": "DNA library preparation of NEON sample TREE_001-O-20170707-COMP-DNA1", - "has_input": [ - "nmdc:procsm-99-xyz2" - ], - "has_output": [ - "nmdc:procsm-99-xyz3" - ], - "start_date": "2021-01-15", - "end_date": "2021-01-15", - "library_type": "DNA" - } - ], - "processed_sample_set": [ - { - "id": "nmdc:procsm-99-xyz1", - "name": "first processed sample set" - }, - { - "id": "nmdc:procsm-99-xyz2", - "name": "first DNA extract" - }, - { - "id": "nmdc:procsm-99-xyz3", - "name": "first library" - } - ], - "extraction_set": [ - { - "id": "nmdc:extrp-99-abcdef", - "name": "first dna extraction set", - "has_input": [ - "nmdc:procsm-99-xyz1" - ], - "has_output": [ - "nmdc:procsm-99-xyz2" - ], - "start_date": "2021-01-15", - "end_date": "2021-01-15", - "extraction_target": "DNA" - } - ], - "biosample_set": [ - { - "id": "nmdc:bsm-99-abcdef1", - "part_of": [ - "nmdc:sty-11-34xj1150" - ], - "env_broad_scale": { - "has_raw_value": "ENVO:00002030", - "term": { - "id": "ENVO:00002030" - } - }, - "env_local_scale": { - "has_raw_value": "ENVO:00002169", - "term": { - "id": "ENVO:00002169" - } - }, - "env_medium": { - "has_raw_value": "ENVO:00005792", - "term": { - "id": "ENVO:00005792" - } - } - }, - { - "id": "nmdc:bsm-99-abcdef2", - "part_of": [ - "nmdc:sty-11-34xj1150" - ], - "env_broad_scale": { - "has_raw_value": "ENVO:00002030", - "term": { - "id": "ENVO:00002030" - } - }, - "env_local_scale": { - "has_raw_value": "ENVO:00002169", - "term": { - "id": "ENVO:00002169" - } - }, - "env_medium": { - "has_raw_value": "ENVO:00005792", - "term": { - "id": "ENVO:00005792" - } - } - }, - { - "id": "nmdc:bsm-99-abcdef3", - "part_of": [ - "nmdc:sty-11-34xj1150" - ], - "env_broad_scale": { - "has_raw_value": "ENVO:00002030", - "term": { - "id": "ENVO:00002030" - } - }, - "env_local_scale": { - "has_raw_value": "ENVO:00002169", - "term": { - "id": "ENVO:00002169" - } - }, - "env_medium": { - "has_raw_value": "ENVO:00005792", - "term": { - "id": "ENVO:00005792" - } - } - } - ], - "data_object_set": [ - { - "id": "nmdc:dobj-12-jdhk9537", - "name": "BMI_HY7W2BGXG_Plate19S_13WellG10_R1.fastq.gz", - "description": "Test R1 data", - "data_object_type": "Metagenome Raw Read 1", - "url": "https://storage.neonscience.org/neon-microbial-raw-seq-files/2020/BMI_HY7W2BGXG_mms_R1/BMI_HY7W2BGXG_Plate19S_13WellG10_R1.fastq.gz", - "type": "nmdc:DataObject" - }, - { - "id": "nmdc:dobj-12-yx0tfp52", - "name": "W2BGXG_Plate19S_13WellG10_R2.fastq.gz", - "description": "Test R2 data", - "data_object_type": "Metagenome Raw Read 2", - "url": "https://storage.neonscience.org/neon-microbial-raw-seq-files/2020/BMI_HY7W2BGXG_mms_R2/BMI_HY7W2BGXG_Plate19S_13WellG10_R2.fastq.gz", - "type": "nmdc:DataObject" - }, - { - "id": "nmdc:dobj-12-71q7wv80", - "name": "1472_51293.filtered.fastq.gz", - "description": "Test filtered data for NEON", - "data_object_type": "Filtered Sequencing Reads", - "url": "https://data.microbiomedata.org/data/1472_51293/qa/1472_51293.filtered.fastq.gz", - "type": "nmdc:DataObject" - } - ], - "data_generation_set": [ - { - "id": "nmdc:datgen-11-s9xj2r24", - "name": "Test NEON data", - "has_input": [ - "nmdc:procsm-99-xyz3" - ], - "has_output": [ - "nmdc:dobj-12-jdhk9537", - "nmdc:dobj-12-yx0tfp52" - ], - "instrument_name": "Illumina NovaSeq S4", - "analyte_category": "metagenome", - "part_of": [ - "nmdc:sty-11-34xj1150" - ], - "processing_institution": "Battelle", - "type": "nmdc:OmicsProcessing" - } - ], - "read_qc_analysis_set": [ - { - "id": "nmdc:wfrqc-12-63da5n74", - "name": "TEST Read QC Activity for nmdc:wfrqc-12-63da5n74 ", - "started_at_time": "2023-03-23T17:17:05.111689+00:00", - "ended_at_time": "2023-03-23T17:17:05.111725+00:00", - "was_informed_by": "nmdc:datgen-11-s9xj2r24", - "execution_resource": "NERSC-Cori", - "git_url": "https://github.com/microbiomedata/ReadsQC", - "has_input": [ - "nmdc:dobj-12-jdhk9537", - "nmdc:dobj-12-yx0tfp52" - ], - "has_output": [ - "nmdc:dobj-12-71q7wv80", - "nmdc:dobj-12-y236qp68" - ], - "type": "nmdc:ReadQCAnalysisActivity", - "part_of": [ - "nmdc:wfrqc-11-hcr2by04.1" - ], - "version": "b1.0.7" - } - ], - "pooling_set": [ - { - "id": "nmdc:poolp-99-abcdef", - "name": "first pooling process", - "description": "This is the first pooling process that has ever occurred on earth", - "has_input": [ - "nmdc:bsm-99-abcdef1", - "nmdc:bsm-99-abcdef2", - "nmdc:bsm-99-abcdef3" - ], - "has_output": [ - "nmdc:procsm-99-xyz1" - ], - "start_date": "2021-01-14", - "end_date": "2021-01-14" - } - ] -} \ No newline at end of file diff --git a/src/data/valid/Database-neon_Biosample_to_DataObject_NEON.yaml b/src/data/valid/Database-neon_Biosample_to_DataObject_NEON.yaml index b5d7e05fa2..e7617b92b0 100644 --- a/src/data/valid/Database-neon_Biosample_to_DataObject_NEON.yaml +++ b/src/data/valid/Database-neon_Biosample_to_DataObject_NEON.yaml @@ -114,7 +114,6 @@ read_qc_analysis_set: name: 'TEST Read QC Activity for nmdc:wfrqc-12-63da5n74 ' started_at_time: '2023-03-23T17:17:05.111689+00:00' ended_at_time: '2023-03-23T17:17:05.111725+00:00' - was_informed_by: nmdc:datgen-11-s9xj2r24 part_of: nmdc:wfch-11-ab execution_resource: NERSC-Cori git_url: https://github.com/microbiomedata/ReadsQC diff --git a/src/data/valid/Database-nom_analysis_set.yaml b/src/data/valid/Database-nom_analysis_set.yaml index 64b2aa9569..8a6ab690ce 100644 --- a/src/data/valid/Database-nom_analysis_set.yaml +++ b/src/data/valid/Database-nom_analysis_set.yaml @@ -11,5 +11,4 @@ nom_analysis_set: type: xxx started_at_time: "2018-11-13T20:20:39+00:00" ended_at_time: "2018-11-13T20:20:39+00:00" - was_informed_by: nmdc:act-99-abcdefg part_of: nmdc:wfch-99-abcdefg diff --git a/src/data/valid/Database-with-MetagenomeSequencing.yaml b/src/data/valid/Database-with-MetagenomeSequencing.yaml index faef5c23a3..107926a2d4 100644 --- a/src/data/valid/Database-with-MetagenomeSequencing.yaml +++ b/src/data/valid/Database-with-MetagenomeSequencing.yaml @@ -13,9 +13,6 @@ metagenome_sequencing_set: # or referential integrity violations has_output: - nmdc:22afa3d49b73eaec2e9787a6b88fbdc3 - # legacy was_informed_by id? validator won't catch pattern violations - # or referential integrity violations - was_informed_by: gold:Gp0213371 name: Sequencing Activity for nmdc:mga0vx38 started_at_time: '2021-08-05T14:48:51+00:00' ended_at_time: '2021-09-15T10:13:20+00:00' diff --git a/src/data/valid/MetabolomicsAnalysis-1.yaml b/src/data/valid/MetabolomicsAnalysis-1.yaml index 106e931b87..c09475699a 100644 --- a/src/data/valid/MetabolomicsAnalysis-1.yaml +++ b/src/data/valid/MetabolomicsAnalysis-1.yaml @@ -1,7 +1,6 @@ id: nmdc:wfmb-99-ABCDEF started_at_time: '2021-08-05T14:48:51+00:00' ended_at_time: '2021-09-15T10:13:20+00:00' -was_informed_by: nmdc:a1 execution_resource: NERSC-Cori part_of: nmdc:wfch-11-ab git_url: https://example.org/WorkflowExecutionActivity diff --git a/src/data/valid/MetagenomeSequencing-from-metagenome_seequencing_json.yaml b/src/data/valid/MetagenomeSequencing-from-metagenome_seequencing_json.yaml index 3374484169..7e6029cc79 100644 --- a/src/data/valid/MetagenomeSequencing-from-metagenome_seequencing_json.yaml +++ b/src/data/valid/MetagenomeSequencing-from-metagenome_seequencing_json.yaml @@ -12,9 +12,6 @@ version: v1.0.0 # or referential integrity violations has_output: - nmdc:22afa3d49b73eaec2e9787a6b88fbdc3 -# legacy was_informed_by id? validator won't catch pattern violations -# or referential integrity violations -was_informed_by: gold:Gp0213371 name: Sequencing Activity for nmdc:mga0vx38 started_at_time: '2021-08-05T14:48:51+00:00' ended_at_time: '2021-09-15T10:13:20+00:00' diff --git a/src/data/valid/ReadQcAnalysis-1.yaml b/src/data/valid/ReadQcAnalysis-1.yaml index cb321f16d1..9d0237ce2e 100644 --- a/src/data/valid/ReadQcAnalysis-1.yaml +++ b/src/data/valid/ReadQcAnalysis-1.yaml @@ -11,7 +11,6 @@ output_read_bases: 100.0 output_read_count: 3.0 started_at_time: '2021-08-05T14:48:51+00:00' type: type1 -was_informed_by: "gold:Gp0061273" part_of: "nmdc:wfch-11-ab" has_input: - "jgi:534819030d87850d7aea2a16" diff --git a/src/schema/workflow_execution_activity.yaml b/src/schema/workflow_execution_activity.yaml index ab28f9b5f3..e4ec4ff42d 100644 --- a/src/schema/workflow_execution_activity.yaml +++ b/src/schema/workflow_execution_activity.yaml @@ -75,7 +75,6 @@ classes: - name - started_at_time - ended_at_time - - was_informed_by - used - execution_resource - git_url