From 1e537cabac348b3388e73c4c57bcc9002fb84abc Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?R=C3=BCdiger=20Kilian?= <kilir@users.noreply.github.com>
Date: Thu, 5 Oct 2023 15:07:58 +0200
Subject: [PATCH] Allo to skip unneeded data

---
 interfaces/loadEBSD_h5oina.m | 41 +++++++++++++++++++++++-------------
 1 file changed, 26 insertions(+), 15 deletions(-)

diff --git a/interfaces/loadEBSD_h5oina.m b/interfaces/loadEBSD_h5oina.m
index a01aff644..7a7a917a5 100644
--- a/interfaces/loadEBSD_h5oina.m
+++ b/interfaces/loadEBSD_h5oina.m
@@ -13,8 +13,13 @@
 %
 % Options
 %   CS0 - use sample primary coordinates (default - use acquisition
-%   coordinates CS1)
-% 
+%         coordinates CS1)
+%   skipAllButEBSD     - only read EBSD data
+%   skipEDS            - do not read EDS data
+%   skipEimage         - do not read electron images
+%   skipDataProcessing - do not read data processing (whatever Aztec 
+%                        Crystal saves in the file)
+%
 % 
 % TODO
 % 1) Test if EBSDheader.Specimen_Orientation_Euler does what it's supposed
@@ -36,30 +41,36 @@
 m=1;
 p=1;
 q=1;
+
 %search for EBSD data
 for i = 1:length(all.Groups) % map site on sample
     if ~isempty(all.Groups(i).Groups) % data on map site ('EBSD, EDS, Electron iamge etc)
         for j=1:length(all.Groups(i).Groups)
+        
             if contains(all.Groups(i).Groups(j).Name,'EBSD')
                 EBSD_index{n} = [i j];
                 n = n+1;
             end
-            if contains(all.Groups(i).Groups(j).Name,'EDS')
-                EDS_index{m} = [i j];
-                m = m+1;
-            end
-            if contains(all.Groups(i).Groups(j).Name,'Electron Image')
-                Image_index{p} = [i j];
-                p = p+1;
-            end
 
-            if contains(all.Groups(i).Groups(j).Name,'Data Processing')
-                Processing_index{q} = [i j];
-                q = q+1;
-            end
+            if ~check_option(varargin,'skipAllButEBSD')
             
+                if contains(all.Groups(i).Groups(j).Name,'EDS') & ~check_option(varargin,'skipEDS')
+                    EDS_index{m} = [i j];
+                    m = m+1;
+                end
+
+                if contains(all.Groups(i).Groups(j).Name,'Electron Image') & ~check_option(varargin,'skipEimage')
+                    Image_index{p} = [i j];
+                    p = p+1;
+                end
+
+                if contains(all.Groups(i).Groups(j).Name,'Data Processing') & ~check_option(varargin,'skipDataProcessing')
+                    Processing_index{q} = [i j];
+                    q = q+1;
+                end
+                
+            end
         end
-        
     end
 end