diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml index 13b4617..b4fa634 100644 --- a/.github/workflows/python-app.yml +++ b/.github/workflows/python-app.yml @@ -23,7 +23,7 @@ jobs: fail-fast: false matrix: python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] - poetry-version: ["1.7.1"] + poetry-version: ["1.8.2"] os: [ubuntu-latest] runs-on: ${{ matrix.os }} diff --git a/CHANGELOG.md b/CHANGELOG.md index 534356c..fc18d16 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,9 +10,17 @@ adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). ### Changed -- [issues/35](https://github.com/nasa/python_cmr/issues/35) Eliminated accommodation for - Python versions older than 3.8 and updated CI build to test against Python versions - 3.8 through 3.12. Also, fixed all flake8 warnings. +- [issues/35](https://github.com/nasa/python_cmr/issues/35) Eliminated + accommodation for Python versions older than 3.8 and updated CI build to test + against Python versions 3.8 through 3.12. Also, fixed all flake8 warnings. + +## Fixed + +- [issues/42](https://github.com/nasa/python_cmr/issues/42) Fixed bug where a + `KeyError` was thrown from `Query.get` when the query format was a supported + format other than `"json"`. Further, in such cases, too many items would be + fetched from the CMR due to a bug in how items were counted. Now, no more + than `limit` items are fetched. ## [0.10.0] diff --git a/cmr/queries.py b/cmr/queries.py index 168532e..3583e1c 100644 --- a/cmr/queries.py +++ b/cmr/queries.py @@ -44,38 +44,35 @@ def get(self, limit=2000): :returns: query results as a list """ - page_size = min(limit, 2000) url = self._build_url() results = [] + headers = self.headers.copy() if self.headers else {} more_results = True + n_results = 0 while more_results: - # Only get what we need - page_size = min(limit - len(results), page_size) - response = get(url, headers=self.headers, params={'page_size': page_size}) - if self.headers is None: - self.headers = {} - self.headers['cmr-search-after'] = response.headers.get('cmr-search-after') - - try: - response.raise_for_status() - except exceptions.HTTPError as ex: - raise RuntimeError(ex.response.text) + # Only get what we need on the last page. + page_size = min(limit - n_results, 2000) + response = get(url, headers=headers, params={"page_size": page_size}) + response.raise_for_status() - if self._format == "json": - latest = response.json()['feed']['entry'] - else: - latest = [response.text] + # Explicitly track the number of results we have because the length + # of the results list will only match the number of entries fetched + # when the format is JSON. Otherwise, the length of the results + # list is the number of *pages* fetched, not the number of *items*. + n_results += page_size - results.extend(latest) + results.extend( + response.json()["feed"]["entry"] + if self._format == "json" + else [response.text] + ) - if page_size > len(response.json()['feed']['entry']) or len(results) >= limit: - more_results = False + if cmr_search_after := response.headers.get("cmr-search-after"): + headers["cmr-search-after"] = cmr_search_after - # This header is transient. We need to get rid of it before we do another different query - if self.headers['cmr-search-after']: - del self.headers['cmr-search-after'] + more_results = n_results < limit and cmr_search_after is not None return results diff --git a/tests/fixtures/vcr_cassettes/CYGNSS.yaml b/tests/fixtures/vcr_cassettes/CYGNSS.yaml index 8d2876f..6931ea2 100644 --- a/tests/fixtures/vcr_cassettes/CYGNSS.yaml +++ b/tests/fixtures/vcr_cassettes/CYGNSS.yaml @@ -14,7 +14,7 @@ interactions: uri: https://cmr.earthdata.nasa.gov/search/granules.json?short_name=CYGNSS_NOAA_L2_SWSP_25KM_V1.2&page_size=0 response: body: - string: '{"feed":{"updated":"2023-08-14T17:02:43.878Z","id":"https://cmr.earthdata.nasa.gov:443/search/granules.json?short_name=CYGNSS_NOAA_L2_SWSP_25KM_V1.2&page_size=0","title":"ECHO + string: '{"feed":{"updated":"2024-04-22T23:01:51.047Z","id":"https://cmr.earthdata.nasa.gov:443/search/granules.json?short_name=CYGNSS_NOAA_L2_SWSP_25KM_V1.2&page_size=0","title":"ECHO granule metadata","entry":[]}}' headers: Access-Control-Allow-Origin: @@ -23,31 +23,35 @@ interactions: - CMR-Hits, CMR-Request-Id, X-Request-Id, CMR-Scroll-Id, CMR-Search-After, CMR-Timed-Out, CMR-Shapefile-Original-Point-Count, CMR-Shapefile-Simplified-Point-Count CMR-Hits: - - '2285' + - '2535' CMR-Request-Id: - - 95542032-03c2-4f9b-9dd4-a9831f4e8d50 + - 011118c9-ccef-4f1a-8f7e-8413b9aa3829 CMR-Took: - - '91' + - '19' Connection: - keep-alive + Content-MD5: + - e96bcdd5e31c1af3fce9750bd164620a + Content-SHA1: + - fe9870a4a6914b17d466a7958d7979600ea41a35 Content-Type: - application/json;charset=utf-8 Date: - - Mon, 14 Aug 2023 17:02:43 GMT + - Mon, 22 Apr 2024 23:01:51 GMT Server: - ServerTokens ProductOnly Strict-Transport-Security: - - max-age=31536000 + - max-age=31536000; includeSubDomains; preload Transfer-Encoding: - chunked Vary: - Accept-Encoding, User-Agent Via: - - 1.1 1d07855a178a7ad07a8bd34ed25f09cc.cloudfront.net (CloudFront) + - 1.1 20068bd484823d12a57ecea8a9946b6c.cloudfront.net (CloudFront) X-Amz-Cf-Id: - - 003OwOvyNLsXnSi5Sr_oCLIictNyLpCghIXvvU7EF452aYCyd14ptg== + - 5JKuCGCF7BsnIRr8JnQXytIgNhTeKMPsQPllIMP7nF3qRj8tsy4xcQ== X-Amz-Cf-Pop: - - SFO53-C1 + - PHL51-P1 X-Cache: - Miss from cloudfront X-Content-Type-Options: @@ -55,7 +59,7 @@ interactions: X-Frame-Options: - SAMEORIGIN X-Request-Id: - - 003OwOvyNLsXnSi5Sr_oCLIictNyLpCghIXvvU7EF452aYCyd14ptg== + - 5JKuCGCF7BsnIRr8JnQXytIgNhTeKMPsQPllIMP7nF3qRj8tsy4xcQ== X-XSS-Protection: - 1; mode=block content-length: @@ -78,7 +82,7 @@ interactions: uri: https://cmr.earthdata.nasa.gov/search/granules.json?short_name=CYGNSS_NOAA_L2_SWSP_25KM_V1.2&page_size=2000 response: body: - string: '{"feed":{"updated":"2023-08-14T17:02:46.485Z","id":"https://cmr.earthdata.nasa.gov:443/search/granules.json?short_name=CYGNSS_NOAA_L2_SWSP_25KM_V1.2&page_size=2000","title":"ECHO + string: '{"feed":{"updated":"2024-04-22T23:01:51.623Z","id":"https://cmr.earthdata.nasa.gov:443/search/granules.json?short_name=CYGNSS_NOAA_L2_SWSP_25KM_V1.2&page_size=2000","title":"ECHO granule metadata","entry":[{"boxes":["-37.924 0.002 37.84 180","-37.924 -180 37.84 -0.004"],"time_start":"2017-05-01T00:00:02.000Z","updated":"2022-05-24T00:04:25.705Z","dataset_id":"NOAA CYGNSS Level 2 Science Wind Speed 25-km Product Version 1.2","data_center":"POCLOUD","title":"cyg.ddmi.s20170501-000002-e20170501-235959.l2.wind_trackgridsize25km_NOAAv1.2_L1a21.d21","coordinate_system":"CARTESIAN","day_night_flag":"UNSPECIFIED","time_end":"2017-05-01T23:59:59.000Z","id":"G2276682432-POCLOUD","original_format":"UMM_JSON","granule_size":"1.1920928955078125E-4","browse_flag":true,"collection_concept_id":"C2254232941-POCLOUD","online_access_flag":true,"links":[{"rel":"http://esipfed.org/ns/fedsearch/1.1/metadata#","title":"Download @@ -18087,33 +18091,37 @@ interactions: - CMR-Hits, CMR-Request-Id, X-Request-Id, CMR-Scroll-Id, CMR-Search-After, CMR-Timed-Out, CMR-Shapefile-Original-Point-Count, CMR-Shapefile-Simplified-Point-Count CMR-Hits: - - '2285' + - '2535' CMR-Request-Id: - - 3b6669e5-45cc-4212-9b18-4d7a21d09fdf + - 869515ce-814a-435a-906e-63b5dea05b5f CMR-Search-After: - '["pocloud",1666656001000,2529897764]' CMR-Took: - - '11119' + - '1077' Connection: - keep-alive + Content-MD5: + - 53d7c5982dd51789c5e56920673183ba + Content-SHA1: + - cf0fce3219b17bb8240d16d0a56361a2b4dc1589 Content-Type: - application/json;charset=utf-8 Date: - - Mon, 14 Aug 2023 17:02:55 GMT + - Mon, 22 Apr 2024 23:01:52 GMT Server: - ServerTokens ProductOnly Strict-Transport-Security: - - max-age=31536000 + - max-age=31536000; includeSubDomains; preload Transfer-Encoding: - chunked Vary: - Accept-Encoding, User-Agent Via: - - 1.1 b014854bd0108b7ed0058504b69ccb5a.cloudfront.net (CloudFront) + - 1.1 314bfc6827691675a2973499b9b6ac4e.cloudfront.net (CloudFront) X-Amz-Cf-Id: - - 89jFxNOAP2BJdfGPQi6oylUHxdLRukieRhU6mpGEdKG7qF-YaT3ZnA== + - px5Y7DGXllWjKbtJ0axikDuxUJnqVmLppSnVrYzn2VbzhlW4G3tLTg== X-Amz-Cf-Pop: - - SFO53-C1 + - PHL51-P1 X-Cache: - Miss from cloudfront X-Content-Type-Options: @@ -18121,7 +18129,7 @@ interactions: X-Frame-Options: - SAMEORIGIN X-Request-Id: - - 89jFxNOAP2BJdfGPQi6oylUHxdLRukieRhU6mpGEdKG7qF-YaT3ZnA== + - px5Y7DGXllWjKbtJ0axikDuxUJnqVmLppSnVrYzn2VbzhlW4G3tLTg== X-XSS-Protection: - 1; mode=block content-length: @@ -18143,10 +18151,10 @@ interactions: cmr-search-after: - '["pocloud",1666656001000,2529897764]' method: GET - uri: https://cmr.earthdata.nasa.gov/search/granules.json?short_name=CYGNSS_NOAA_L2_SWSP_25KM_V1.2&page_size=285 + uri: https://cmr.earthdata.nasa.gov/search/granules.json?short_name=CYGNSS_NOAA_L2_SWSP_25KM_V1.2&page_size=535 response: body: - string: 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provided","Campaigns":["Terra"]}],"DataGranule":{"DayNightFlag":"Day","Identifiers":[{"Identifier":"MOD02QKM.A2000055.0010.061.2017171195126.hdf","IdentifierType":"ProducerGranuleId"}],"ProductionDateTime":"2017-06-20T19:51:26.000Z","ArchiveAndDistributionInformation":[{"Name":"Not + provided","Size":45.6425333023071,"SizeInBytes":47859665,"Checksum":{"Value":"00d5aff45c4f45d0ae15476c347deb6f","Algorithm":"MD5"},"SizeUnit":"MB"}]},"Platforms":[{"ShortName":"Terra","Instruments":[{"ShortName":"MODIS"}]}],"MetadataSpecification":{"URL":"https://cdn.earthdata.nasa.gov/umm/granule/v1.6.5","Name":"UMM-G","Version":"1.6.5"}}}]}' + headers: + Access-Control-Allow-Origin: + - '*' + Access-Control-Expose-Headers: + - CMR-Hits, CMR-Request-Id, X-Request-Id, CMR-Scroll-Id, CMR-Search-After, CMR-Timed-Out, + CMR-Shapefile-Original-Point-Count, CMR-Shapefile-Simplified-Point-Count + CMR-Hits: + - '1380320' + CMR-Request-Id: + - f71610d5-303d-4ae0-bbc4-7ec8598d8137 + CMR-Search-After: + - '["laads",951351000000,1462754407]' + CMR-Took: + - '168' + Connection: + - keep-alive + Content-MD5: + - d8b879c60fb7fe8803d1ab67174f32d0 + Content-SHA1: + - 809f983fd196fd99e70efbc34e220d9b0695541e + Content-Type: + - application/vnd.nasa.cmr.umm_results+json;version=1.6.5; charset=utf-8 + Date: + - Mon, 22 Apr 2024 22:50:21 GMT + Server: + - ServerTokens ProductOnly + Strict-Transport-Security: + - max-age=31536000; includeSubDomains; preload + Transfer-Encoding: + - chunked + Vary: + - Accept-Encoding, User-Agent + Via: + - 1.1 a7253311f94fb967603a1d22f7a3c43a.cloudfront.net (CloudFront) + X-Amz-Cf-Id: + - BHtGdv9GBfA_coialMikKw8daR3LCoxrzrmk99BUk7kvw8TQdEfuqQ== + X-Amz-Cf-Pop: + - PHL51-P1 + X-Cache: + - Miss from cloudfront + X-Content-Type-Options: + - nosniff + X-Frame-Options: + - SAMEORIGIN + X-Request-Id: + - BHtGdv9GBfA_coialMikKw8daR3LCoxrzrmk99BUk7kvw8TQdEfuqQ== + X-XSS-Protection: + - 1; mode=block + content-length: + - '5465' + status: + code: 200 + message: OK +version: 1 diff --git a/tests/test_multiple_queries.py b/tests/test_multiple_queries.py index 466cc14..76228e1 100644 --- a/tests/test_multiple_queries.py +++ b/tests/test_multiple_queries.py @@ -1,3 +1,4 @@ +import json import unittest from datetime import datetime @@ -20,16 +21,32 @@ def assert_unique_granules_from_results(granules): get the same results back. This is a one shot test as the results are preserved by VCR but still useful. """ - granule_ids = [] - for granule in granules: - granule_ids.append(granule['title']) - - unique_granules = set(granule_ids) - return len(unique_granules) == len(granule_ids) + return len(granules) == len({str(granule) for granule in granules}) class TestMultipleQueries(unittest.TestCase): + def test_get_unparsed_format(self): + """ + If we execute a get with a limit of more than 2000 + then we expect multiple invocations of a cmr granule search and + to not fetch back more results than we ask for + """ + with my_vcr.use_cassette( + "tests/fixtures/vcr_cassettes/test_get_unparsed_format.yaml" + ) as cass: + api = GranuleQuery().format("umm_json") + + pages = api.short_name("MOD02QKM").get(2) + granules = [ + granule for page in pages for granule in json.loads(page)["items"] + ] + self.assertEqual(2, len(granules)) + assert_unique_granules_from_results(granules) + # Assert that we performed only 1 search request + self.assertEqual(1, len(cass)) + self.assertIsNone((api.headers or {}).get("cmr-search-after")) + def test_get_more_than_2000(self): """ If we execute a get with a limit of more than 2000 @@ -45,7 +62,7 @@ def test_get_more_than_2000(self): assert_unique_granules_from_results(granules) # Assert that we performed two search results queries self.assertEqual(2, len(cass)) - self.assertIsNone(api.headers.get('cmr-search-after')) + self.assertIsNone((api.headers or {}).get("cmr-search-after")) def test_get(self): """ @@ -61,7 +78,7 @@ def test_get(self): assert_unique_granules_from_results(granules) # Assert that we performed one search results query self.assertEqual(1, len(cass)) - self.assertIsNone(api.headers.get('cmr-search-after')) + self.assertIsNone((api.headers or {}).get("cmr-search-after")) def test_get_all_less_than_2k(self): """ @@ -77,7 +94,7 @@ def test_get_all_less_than_2k(self): assert_unique_granules_from_results(granules) # Assert that we performed a hits query and one search results query self.assertEqual(2, len(cass)) - self.assertIsNone(api.headers.get('cmr-search-after')) + self.assertIsNone((api.headers or {}).get("cmr-search-after")) def test_get_all_more_than_2k(self): """ @@ -88,12 +105,12 @@ def test_get_all_more_than_2k(self): with my_vcr.use_cassette('tests/fixtures/vcr_cassettes/CYGNSS.yaml') as cass: api = GranuleQuery() granules = api.short_name("CYGNSS_NOAA_L2_SWSP_25KM_V1.2").get_all() - self.assertEqual(2285, len(granules)) + self.assertEqual(2535, len(granules)) # Assert all 2285 qranule results have unique granule ids assert_unique_granules_from_results(granules) # Assert that we performed a hits query and two search results queries self.assertEqual(3, len(cass)) - self.assertIsNone(api.headers.get('cmr-search-after')) + self.assertIsNone((api.headers or {}).get("cmr-search-after")) def test_zero_hits_query(self): """ @@ -110,4 +127,4 @@ def test_zero_hits_query(self): .get() ) self.assertEqual(0, len(granules)) - self.assertIsNone(api.headers.get('cmr-search-after')) + self.assertIsNone((api.headers or {}).get("cmr-search-after"))