The default synonym property (skos/core#altLabel) does not handle multiple values #97
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I believe this has been fixed within AgroPortal branch. As illustrated by the call: @vemonet Do you remember where this would be in the code ? |
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@mdorf What would happen if we plugged #altLabel into the synonym properties list for these other ontologies? |
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@syphax-bouazzouni do you confirmed this is fixed. |
galviset
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in EarthPortal/ontologies_linked_data
Mar 14, 2024
* fix json serializer nil exception (#79) if hash was missing @context key the json serializer throwed a nil exception * Merge pull request #72 from ontoportal-lirmm/feature/migrate-attrbiutes-metadata-to-scheme-file Feature: Update ontology submission model 2023 - Part 1 - Update attributes validators and metadata * Merge pull request #82 from ontoportal-lirmm/feature/embed-meterics-for-submissions Feature: embed metrics for submission model * Merge pull request #86 from ontoportal-lirmm/fix/read_restricted_based_on-nil Fix: call to read_restricted? only if instance_to_base_on not nil * Merge pull request #90 from ontoportal-lirmm/feature/add-persons-and-organization-models Feature: Update ontology submission model 2023 - Part 2 - Add person & organization models * in tests no more use the reload argument in the exist? method --------- Co-authored-by: Raimi Solorzano Niederhausen <44089477+RaimiSol@users.noreply.github.com>
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When an ontology uses the property http://www.w3.org/2004/02/skos/core#altLabel (which BioPortal uses as the default synonym property) to define multiple synonyms for a term, BioPortal picks only the very first value for its own reserved "synonym" property. Examples:
http://data.bioontology.org/ontologies/MESH/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMESH%2FD009422?display=all
http://data.bioontology.org/ontologies/CC_SNOMED/classes/http%3A%2F%2Fsnomed.info%2Fid%2F56265001?display=all
http://data.bioontology.org/ontologies/SNOMEDCT/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FSNOMEDCT%2F272379006?display=all
http://data.bioontology.org/ontologies/NCBITAXON/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FNCBITAXON%2F2157?display=all
When using the properties http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym or http://www.geneontology.org/formats/oboInOwl#hasExactSynonym, BioPortal correctly identifies multiple synonyms. Examples:
http://data.bioontology.org/ontologies/CHEBI/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCHEBI_33250?display=all
http://data.bioontology.org/ontologies/ENVO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0007033?display=all
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