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Add support for full length circRNA sequence detection #111

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nictru opened this issue Apr 16, 2024 · 0 comments
Open
4 tasks

Add support for full length circRNA sequence detection #111

nictru opened this issue Apr 16, 2024 · 0 comments
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feature-request Request for a new pipeline feature

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@nictru
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nictru commented Apr 16, 2024

Description of feature

Currently, only the BSJs are detected and quantified, without knowing the exact sequences. There are several tools which can obtain the full length circRNA sequence from paired-end data listed below. Unfortunately, none of these tools can process single-end data.

We should then create a parameter for switching between BSJ level and Isoform level discovery.

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@nictru nictru added the enhancement Improvement for existing functionality label Apr 16, 2024
@nictru nictru added feature-request Request for a new pipeline feature and removed enhancement Improvement for existing functionality labels Jun 9, 2024
@nictru nictru added this to the Before release process milestone Jun 9, 2024
@nictru nictru self-assigned this Jun 9, 2024
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feature-request Request for a new pipeline feature
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