{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"ODC-Mouse-Forms","owner":"CoBrALab","isFork":false,"description":"A repo containing OpenDataCapture forms for tracking mouse data gathered from experiments within the CoBra Lab","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":5,"issueCount":14,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-18T20:18:05.852Z"}},{"type":"Public","name":"optimized_antsMultivariateTemplateConstruction","owner":"CoBrALab","isFork":false,"description":"A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":28,"starsCount":22,"forksCount":8,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-12T19:46:43.906Z"}},{"type":"Public","name":"RABIES","owner":"CoBrALab","isFork":false,"description":"fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/en/stable/","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":49,"starsCount":35,"forksCount":14,"license":"Other","participation":[19,35,16,0,1,0,3,2,0,0,0,0,6,0,0,0,0,0,0,0,2,2,1,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,6,5,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-03T19:51:08.156Z"}},{"type":"Public","name":"twolevel_ants_dbm","owner":"CoBrALab","isFork":false,"description":"A twolevel deformation based morphometry pipeline using ants","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":19,"starsCount":10,"forksCount":8,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-12T18:59:52.530Z"}},{"type":"Public","name":"minc-toolkit-extras","owner":"CoBrALab","isFork":false,"description":"Extra miscellaneous scripts for minc-toolkit","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":8,"starsCount":6,"forksCount":7,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-29T15:02:27.506Z"}},{"type":"Public","name":"minc-bpipe-library","owner":"CoBrALab","isFork":false,"description":"Library of bpipe implemented commands commonly applied to minc datafiles, suitable for importing into other pipelines","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":1,"issueCount":10,"starsCount":13,"forksCount":8,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-21T16:07:58.874Z"}},{"type":"Public","name":"MAGeTbrain","owner":"CoBrALab","isFork":false,"description":"Multiple Automatically Generated Templates brain segmentation algorithm","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":12,"starsCount":48,"forksCount":25,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-18T17:09:58.266Z"}},{"type":"Public","name":"HitchhikersGuideToNeuroimaging","owner":"CoBrALab","isFork":false,"description":"The Hitchhiker's Guide To Neuroimaging - All the things HOWTOs don't tell you","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":5,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T19:13:39.850Z"}},{"type":"Public","name":"UKBB-tabular-processing","owner":"CoBrALab","isFork":false,"description":"Scripts to handle the tabular data associated with the UK BioBank","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":7,"starsCount":8,"forksCount":1,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-15T19:54:18.556Z"}},{"type":"Public","name":"RABIES_tutorial","owner":"CoBrALab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"Apache License 2.0","participation":[0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-12T20:25:29.870Z"}},{"type":"Public","name":"MAGeTBrain-nextflow","owner":"CoBrALab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-19T16:03:13.242Z"}},{"type":"Public","name":"iterativeN3","owner":"CoBrALab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":8,"starsCount":0,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-16T20:13:26.311Z"}},{"type":"Public","name":"WMH_Signal_AD_OParent_2023","owner":"CoBrALab","isFork":false,"description":"WMH signal measures paper","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-07T18:16:58.381Z"}},{"type":"Public","name":"MousePhgyMetrics","owner":"CoBrALab","isFork":false,"description":"Extracts various instantaneous metrics from the raw respiration and pulse oximetry traces","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-09T22:11:52.318Z"}},{"type":"Public","name":"QLS-course-materials","owner":"CoBrALab","isFork":true,"description":"Materials for the 2022 NeuroDataScience Course (McGill QLSC612)","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":21,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-02T02:15:55.971Z"}},{"type":"Public","name":"cobra-nmf","owner":"CoBrALab","isFork":false,"description":"Collection of scripts for formatting vertex and/or voxel data into matrix format","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":8,"starsCount":5,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-19T13:58:43.534Z"}},{"type":"Public","name":"qbatch","owner":"CoBrALab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":28,"starsCount":27,"forksCount":13,"license":"The Unlicense","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-25T04:25:40.523Z"}},{"type":"Public","name":"cortical_markers_paper","owner":"CoBrALab","isFork":false,"description":"All code used to generate the results seen in the manuscript ____","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-13T15:11:07.218Z"}},{"type":"Public","name":"antsRegistration-MAGeT","owner":"CoBrALab","isFork":false,"description":"A reimplementation of MAGeTbrain using only ANTs tools.","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":1,"issueCount":20,"starsCount":16,"forksCount":6,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-05T04:44:08.048Z"}},{"type":"Public","name":"design-choices-cca-neuroimaging","owner":"CoBrALab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-13T19:24:20.748Z"}},{"type":"Public","name":"fMRI_phantom_analysis","owner":"CoBrALab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-21T15:03:47.308Z"}},{"type":"Public","name":"atlases","owner":"CoBrALab","isFork":false,"description":"Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":3,"starsCount":27,"forksCount":18,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-18T17:35:27.777Z"}},{"type":"Public","name":"CobraLab.github.io","owner":"CoBrALab","isFork":true,"description":"Website","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":6,"starsCount":0,"forksCount":3951,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-21T22:08:11.075Z"}},{"type":"Public","name":"PyQC","owner":"CoBrALab","isFork":false,"description":"Python+Qt5 Interface for quickly quality-controlling arbitrary sets of images","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":6,"starsCount":0,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-19T20:34:59.173Z"}},{"type":"Public","name":"MTR_processing","owner":"CoBrALab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-02T19:09:07.216Z"}},{"type":"Public","name":"documentation","owner":"CoBrALab","isFork":false,"description":"Documentation for every thing, everything documented","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":2,"starsCount":41,"forksCount":6,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-08T14:12:38.723Z"}},{"type":"Public","name":"TractREC","owner":"CoBrALab","isFork":false,"description":"Collection of tools to perform diffusion processing and tractography.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":1,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-26T14:06:16.795Z"}},{"type":"Public","name":"BSC","owner":"CoBrALab","isFork":false,"description":" MRI biomarker, boundary sharpness coefficient (BSC).","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":2,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-09T15:59:10.997Z"}},{"type":"Public","name":"MAGeTDocker","owner":"CoBrALab","isFork":false,"description":"Repository with Docker Build for MAGeTBrain","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":2,"starsCount":1,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-10T19:57:55.403Z"}},{"type":"Public","name":"iterativeN4_multispectral","owner":"CoBrALab","isFork":false,"description":"A pipeline which performs iterative classification and bias field correction of T1-weighted MRIs","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":10,"starsCount":1,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-03T15:01:07.278Z"}}],"repositoryCount":39,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"CoBrALab repositories"}